FC931005 | Citrus Genome Database

Overview


Name	FC931005
Unique Name	FC931005
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	750

Libraries


Library Name	Type
PostHarvP1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig15254	contig	Ccv1_Contig15254:1..751.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC931005 vs. ExPASy Swiss-Prot
Match: U559_DICDI (UPF0559 protein OS=Dictyostelium discoideum GN=DDB_G0279265 PE=3 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 2.823e-39
Identity = 81/147 (55.10%), Postives = 102/147 (69.39%), Query Frame = 2

Query:  296 KKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXXXXXXPRGEEIKAF*KSWRELLHYWLFE 736
            KKVI+  EW+ KL +V I K D+NKLVMN+LV EGY +AA KF+ ES T+  +DLA+I DRMA++ A+QCG+VE  IE VNDLNPEILDTNPQL+FHLQQQ+LIELIR G              P+GEE   F +   + +   +FE
Sbjct:   11 KKVISTSEWDDKLAEVNISKSDLNKLVMNYLVIEGYQEAAAKFQEESSTQTTVDLASIADRMAIRSAIQCGDVEKGIEIVNDLNPEILDTNPQLYFHLQQQKLIELIRKGMTAEALKFAQDELAPQGEENNKFLEELEKTISLLVFE 157

[Close]

BLAST of FC931005 vs. ExPASy Swiss-Prot
Match: CT011_CHICK (Protein C20orf11 homolog OS=Gallus gallus GN=RCJMB04_9k15 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 8.836e-32
Identity = 62/126 (49.21%), Postives = 91/126 (72.22%), Query Frame = 2

Query:  305 ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXXXXXXPRGEE 682
            IT++EW +KLN++ I++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  +              +GEE
Sbjct:   10 ITKDEWMEKLNNLHIQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIKIREMILKGQIQEAISLINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQLAEQGEE 135

HSP 2 Score: 23.0978 bits (48), Expect = 8.836e-32
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 1

Query:  694 LEELERTVALLAF 732
            L E+ERT+ALLAF
Sbjct:  140 LTEMERTLALLAF 152

[Close]

BLAST of FC931005 vs. ExPASy Swiss-Prot
Match: CT011_MOUSE (Protein C20orf11 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.499e-31
Identity = 61/126 (48.41%), Postives = 91/126 (72.22%), Query Frame = 2

Query:  305 ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXXXXXXPRGEE 682
            IT++EW +KLN++ +++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  +              +GEE
Sbjct:   10 ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIKIREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQLAEQGEE 135

HSP 2 Score: 23.0978 bits (48), Expect = 1.499e-31
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 1

Query:  694 LEELERTVALLAF 732
            L E+ERT+ALLAF
Sbjct:  140 LTEMERTLALLAF 152

[Close]

BLAST of FC931005 vs. ExPASy Swiss-Prot
Match: CT011_HUMAN (Protein C20orf11 OS=Homo sapiens GN=C20orf11 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.499e-31
Identity = 61/126 (48.41%), Postives = 91/126 (72.22%), Query Frame = 2

Query:  305 ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXXXXXXPRGEE 682
            IT++EW +KLN++ +++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  +              +GEE
Sbjct:   10 ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIKIREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQLAEQGEE 135

HSP 2 Score: 23.0978 bits (48), Expect = 1.499e-31
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 1

Query:  694 LEELERTVALLAF 732
            L E+ERT+ALLAF
Sbjct:  140 LTEMERTLALLAF 152

[Close]

BLAST of FC931005 vs. ExPASy Swiss-Prot
Match: CT011_BOVIN (Protein C20orf11 homolog OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.499e-31
Identity = 61/126 (48.41%), Postives = 91/126 (72.22%), Query Frame = 2

Query:  305 ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXXXXXXPRGEE 682
            IT++EW +KLN++ +++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  +              +GEE
Sbjct:   10 ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIKIREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQLAEQGEE 135

HSP 2 Score: 23.0978 bits (48), Expect = 1.499e-31
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 1

Query:  694 LEELERTVALLAF 732
            L E+ERT+ALLAF
Sbjct:  140 LTEMERTLALLAF 152

[Close]

BLAST of FC931005 vs. ExPASy Swiss-Prot
Match: CT011_DANRE (Protein C20orf11 homolog OS=Danio rerio GN=zgc:73100 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.951e-31
Identity = 61/105 (58.10%), Postives = 86/105 (81.90%), Query Frame = 2

Query:  305 ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIR 619
            IT+EEW  KLN+V I++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP++DL ++ +R+ +++ V  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR
Sbjct:   10 ITKEEWMDKLNNVHIQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPNVDLDSLDERIKIREMVLKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIR 114

HSP 2 Score: 23.0978 bits (48), Expect = 1.951e-31
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 1

Query:  694 LEELERTVALLAF 732
            L E+ERT+ALLAF
Sbjct:  140 LTEMERTLALLAF 152

[Close]

BLAST of FC931005 vs. ExPASy Swiss-Prot
Match: U559_NEMVE (UPF0559 protein v1g247787 OS=Nematostella vectensis GN=v1g247787 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 2.542e-31
Identity = 60/126 (47.62%), Postives = 90/126 (71.43%), Query Frame = 2

Query:  305 ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXXXXXXPRGEE 682
            + REEW +K+  ++ ++ +MN+L+M++LVTEGY +AAEKFR+ESGT+P   L ++ DR+ +++AVQ G++E A+   N LNP+ILD+N QL+FHLQQQRLIELIR   +             +G+E
Sbjct:    7 VNREEWMEKIGKLRFQRAEMNRLIMDYLVTEGYKEAAEKFRIESGTQPTAPLDSLDDRIKIREAVQKGDLEQAVSMTNKLNPDILDSNQQLYFHLQQQRLIELIREKDIEAAVEFAQGQFSEQGQE 132

HSP 2 Score: 25.7942 bits (55), Expect = 2.542e-31
Identity = 11/14 (78.57%), Postives = 14/14 (100.00%), Query Frame = 1

Query:  691 FLEELERTVALLAF 732
            +LEELE+T+ALLAF
Sbjct:  136 YLEELEQTMALLAF 149

[Close]

BLAST of FC931005 vs. ExPASy Swiss-Prot
Match: YDED_SCHPO (Uncharacterized protein C12B10.13 OS=Schizosaccharomyces pombe GN=SPAC12B10.13 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.143e-14
Identity = 39/102 (38.24%), Postives = 64/102 (62.75%), Query Frame = 2

Query:  314 EEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIR 619
            E+WEK+   V I   D+N L++++LV +G  +AA+ F  E+          + +R+ + + ++ G++  AI K+N+L PEILDTN +L F L + RL+ELIR
Sbjct:   20 EQWEKQTKSVHIDNSDVNSLILDYLVIQGDEEAAKTFAEEAQITDYYIPPYVKERLEICELIKSGSINSAICKLNELEPEILDTNSELLFELLRLRLLELIR 121

The following BLAST results are available for this feature:

BLAST of FC931005 vs. ExPASy Swiss-Prot

BLAST of FC931005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8


Match Name	E-value	Identity	Description
U559_DICDI	2.823e-39	55.10	UPF0559 protein OS=Dictyostelium discoideum GN=DDB...	[more]
CT011_CHICK	8.836e-32	49.21	Protein C20orf11 homolog OS=Gallus gallus GN=RCJMB...	[more]
CT011_MOUSE	1.499e-31	48.41	Protein C20orf11 homolog OS=Mus musculus PE=2 SV=1	[more]
CT011_HUMAN	1.499e-31	48.41	Protein C20orf11 OS=Homo sapiens GN=C20orf11 PE=1 ...	[more]
CT011_BOVIN	1.499e-31	48.41	Protein C20orf11 homolog OS=Bos taurus PE=2 SV=1	[more]
CT011_DANRE	1.951e-31	58.10	Protein C20orf11 homolog OS=Danio rerio GN=zgc:731...	[more]
U559_NEMVE	2.542e-31	47.62	UPF0559 protein v1g247787 OS=Nematostella vectensi...	[more]
YDED_SCHPO	3.143e-14	38.24	Uncharacterized protein C12B10.13 OS=Schizosacchar...	[more]

Properties


Property Name	Value
Genbank description	C34100D05EF PostHarvP1 Citrus clementina cDNA clone C34100D05, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC931005 ID=FC931005; Name=FC931005; organism=Citrus clementina; type=EST; length=750bp
GATGCTTCTTCGCGCATTTACAGACAAGCAAAAGCGAGACATCGAAAAAC
CTCATCAAACAACTCCCATTTAGGAAAAAAATAAAAGAAAAGAAAAAAAG
AAAATTAAAGACGGTGACGTTCTCCACTCACAGAAATAATTAGAAGTTAT
TGGAAAAAGGGGAAAAATTAACTTACATCTCAGATTTCATTTTCGGGAAT
CAGAAATTAACAGGAATGAAGGTGGCGGTACACTGATGTCACTTTTCTGG
ATTGTGATTCGTCAGCTAGCGGAAATCGAGGCAATGGCTATGTCAAAGAA
AGTGATTACGCGGGAAGAGTGGGAGAAGAAACTTAATGATGTGAAGATTA
GGAAAGAAGATATGAATAAGTTAGTGATGAATTTTCTTGTCACTGAAGGT
TATGTTGATGCTGCTGAGAAATTCCGGATGGAATCTGGAACCGAACCAGA
TATAGATCTTGCAACAATAACAGATCGCATGGCTGTTAAAAAGGCTGTAC
AATGTGGGAACGTTGAGGATGCTATCGAGAAAGTTAATGACTTAAACCCT
GAGATATTGGATACAAATCCGCAACTGTTTTTCCATCTGCAACAGCAGAG
ATTGATAGAATTAATTCGGAATGGAAAGGTGGAAGAGGCTTTGGAGTTTG
CTCAGGAGGAGCTTGCACCAAGAGGAGAAGAAATCAAAGCTTTTTAGAAG
AGTTGGAGAGAACTGTTGCACTATTGGCTTTTTGAGATGTCTCCAACTGT