FC931007

Overview
NameFC931007
Unique NameFC931007
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length747
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig777 contig Ccv1_Contig777:216..961. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931007 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 370.163 bits (949), Expect = 6.774e-102
Identity = 183/212 (86.32%), Postives = 202/212 (95.28%), Query Frame = 3
Query:   33 MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKR 668
            M GY+ D+EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFAT++L +D KVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR ATF+N  RWL+ELR+HTDPNI+VMLIGNK+DLRHLVAV TEDGK+FAE+ESLYFMETSAL+ATNVENAFTEVLTQIY+IVSKRAVEAG +G++S LPSKG+TINVK+DSSVLKR
Sbjct:    1 MGGYRTDDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSKRAVEAGDSGSSSGLPSKGQTINVKEDSSVLKR 212          
BLAST of FC931007 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 362.073 bits (928), Expect = 1.845e-99
Identity = 179/212 (84.43%), Postives = 197/212 (92.92%), Query Frame = 3
Query:   33 MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKR 668
            MAGYK D+EYDYLFKLVLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFAT+SL ID KV+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR  TF+  GRWL+ELR+HTDPNI+VMLIGNK+DLRHLV VSTEDGKAFAE+ESLYFMETSAL+ATNVENAF+EVLTQIY+IVSKRAVEAG   + S +PS+G+TINV +DSSVL R
Sbjct:    1 MAGYKADDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPNIVVMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIVSKRAVEAGDRPSTSVVPSQGQTINVNEDSSVLNR 212          
BLAST of FC931007 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 358.221 bits (918), Expect = 2.664e-98
Identity = 179/212 (84.43%), Postives = 196/212 (92.45%), Query Frame = 3
Query:   33 MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKR 668
            MAGY+ DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFAT++ +++ KVVKAQIWDTAGQERYRAITSAYYRGAVGALL+YDVTRHATF+N  RWLRELR HTDPNI+VMLIGNK DLRHLVAV TE+ KAFAE+ESLYFMETSALDATNVENAFTEVLTQI+KIVSKR+V+ G  G ++ LP KGETINVK+D SVLKR
Sbjct:    1 MAGYRADEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIVVMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSKRSVDGG--GESADLPGKGETINVKEDGSVLKR 210          
BLAST of FC931007 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 356.681 bits (914), Expect = 7.751e-98
Identity = 174/212 (82.08%), Postives = 194/212 (91.51%), Query Frame = 3
Query:   33 MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKR 668
            MAGY+ D+EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFAT+SL IDNKV+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH T++NV RWL+ELR+HTDPNI+VMLIGNK+DLRHLVAVST++ K  AE+E LYFMETSAL+ATNVENAFTE LTQIY+IVSK+AVEAG  G  S+ P KGETIN+KD+ S  K+
Sbjct:    1 MAGYRADDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIVVMLIGNKSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYRIVSKKAVEAGDEGATSSAPPKGETINIKDEGSSWKK 212          
BLAST of FC931007 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 345.51 bits (885), Expect = 1.787e-94
Identity = 169/211 (80.09%), Postives = 197/211 (93.36%), Query Frame = 3
Query:   36 AGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKR 668
            AGY+ +++YDYLFK+VLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFATRSL++D KVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH+TF+NV RWL+ELR+HTDPNI+VML+GNK+DLRHLVAV T++GKAFAE+ESLYFMETSAL++TNVENAF EVLTQIY+IVSKR+VEAG +  A + P KGE IN+KDD S +K+
Sbjct:    3 AGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVVMLVGNKSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFAEVLTQIYRIVSKRSVEAGDD--AGSGPGKGEKINIKDDVSAVKK 211          
BLAST of FC931007 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 337.806 bits (865), Expect = 3.726e-92
Identity = 168/212 (79.25%), Postives = 192/212 (90.57%), Query Frame = 3
Query:   33 MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKR 668
            MAGY+ +++YDYLFK+VLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATR+L++D KVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR ATF+NV RWL+EL+ HTDPNI+VML+GNK+DLRHL+AV TEDGK++AEQESL FMETSAL+ATNVE+AF EVLTQIY+I SK+ VEAG +G AS    KGE I VK+D S LK+
Sbjct:    1 MAGYRVEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSKKQVEAGEDGNASV--PKGEKIEVKNDVSALKK 210          
BLAST of FC931007 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 8.300e-92
Identity = 166/212 (78.30%), Postives = 193/212 (91.04%), Query Frame = 3
Query:   33 MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKR 668
            MAGY+ D+EYDYLFK+VLIGDSGVGKSNLLSRFTKNEF+LESKSTIGVEFATRSL +D+KV+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH+TF+NV  WL+ELR HTDPNI+VML+GNK+DLRHLVAV TED K+FAE+ESLYFMETSAL+ATNVENAF EVLTQI+ IVSK+A+EA S   ++ +PSKG+ I++  D S +K+
Sbjct:    1 MAGYRADDEYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSKKAMEAASE--SANVPSKGDKIDIGKDVSAVKK 210          
BLAST of FC931007 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 1.240e-87
Identity = 159/211 (75.36%), Postives = 191/211 (90.52%), Query Frame = 3
Query:   39 GYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINV-KDDSSVLKR 668
            GY+ +++YDYLFKLVLIGDSGVGKSNLLSRF++NEFNLESKSTIGVEFATRS+R+D+K+VKAQIWDTAGQERYRAITSAYYRGAVGAL+VYD+TRH TF+NV RWL+ELR+HTD NI++ML+GNK DLRHL AVSTED KAFAE+E+ +FMETSAL++ NVENAFTEVLT+IYK+V ++A+E G +  A  LP KG+TINV KDD S +K+
Sbjct:    4 GYRAEDDYDYLFKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAFTEVLTEIYKVVCRKALEVGDDPAA--LP-KGQTINVGKDDVSAVKK 211          
BLAST of FC931007 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.520e-77
Identity = 143/207 (69.08%), Postives = 173/207 (83.57%), Query Frame = 3
Query:   51 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRN 671
            D EYDYLFK+VLIGDSGVGKSN+LSRFT+NEF LESKSTIGVEFATR+L+++ K VKAQIWDTAGQERYRAITSAYYRGAVGALLVYD+T+  TF NV RWLRELR+H D NI++M+ GNK+DL+HL AVS EDG+A AE+E L F+ETSAL+A N+E AF  +LT+IY I+SK+A+ A     +S LP +G TINV D S+  +R+
Sbjct:    6 DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLKHLRAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTILTEIYHIISKKALAA--QEASSNLPGQGTTINVADASANQRRS 210          
BLAST of FC931007 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.520e-77
Identity = 141/209 (67.46%), Postives = 172/209 (82.30%), Query Frame = 3
Query:   42 YKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKR 668
            ++ D EYDYLFK+VLIGDSGVGKSN+LSRFT+NEF LESKSTIGVEFATR+L+++ K VKAQIWDTAGQERYRAITSAYYRGAVGALLVYD+T+  TF NV RWLRELR+H D NI++M+ GNK+DL HL AVS +DG A +E+E L F+ETSAL+ATN+E AF  +LT+IY IVSK+A+ A      +++P +G TINV D S   K+
Sbjct:    3 HRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALAAQEATAGASVPGQGTTINVADTSGNTKK 211          
The following BLAST results are available for this feature:
BLAST of FC931007 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11D_LOTJA6.774e-10286.32Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
RB11E_LOTJA1.845e-9984.43Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
RAA1A_ARATH2.664e-9884.43Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]
YPT3_NICPL7.751e-9882.08Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]
RIC2_ORYSJ1.787e-9480.09Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
RAA1B_ARATH3.726e-9279.25Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
RAA1C_ARATH8.300e-9278.30Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
RB11B_TOBAC1.240e-8775.36Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RB2BV_BETVU1.520e-7769.08Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
RB11C_LOTJA1.520e-7767.46Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]

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Properties
Property NameValue
Genbank descriptionC34100D07EF PostHarvP1 Citrus clementina cDNA clone C34100D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931007 ID=FC931007; Name=FC931007; organism=Citrus clementina; type=EST; length=747bp
ACAAGTGAACAGTGACACATACACCTATATAAATGGCGGGTTACAAGCCT
GATGAGGAGTATGATTACCTTTTCAAGTTGGTTTTGATTGGGGACTCAGG
CGTTGGTAAATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTTTAATT
TGGAATCAAAGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTTTGAGG
ATTGATAACAAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGCCAAGA
AAGGTACCGTGCAATTACAAGTGCTTACTACCGGGGTGCCGTTGGTGCTT
TGCTTGTATACGATGTAACACGACATGCTACATTTCAGAATGTTGGAAGG
TGGTTGAGGGAGTTAAGAGAGCACACAGATCCGAACATTATTGTCATGCT
CATTGGCAATAAGACAGATCTTCGACACCTTGTGGCTGTCTCAACTGAGG
ATGGGAAAGCTTTTGCTGAGCAGGAGTCTCTCTATTTCATGGAGACTTCC
GCATTGGATGCAACCAATGTGGAAAATGCTTTTACTGAGGTTCTTACTCA
GATATACAAGATCGTGAGCAAGAGAGCAGTTGAAGCAGGCAGCAATGGAA
CTGCTTCCACACTTCCATCTAAAGGAGAGACGATAAATGTCAAAGACGAT
TCATCCGTTCTAAAGAGAAATTGGATGCTGCTCAACTAGGGAGATATATT
CGGTTACCAGATTTTACAGCATTGGGCAATTTACTTGTACATGATCA
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