FC931008

Overview
NameFC931008
Unique NameFC931008
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13760 contig Ccv1_Contig13760:108..834. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931008 vs. ExPASy Swiss-Prot
Match: AOC4_ARATH (Allene oxide cyclase 4, chloroplastic OS=Arabidopsis thaliana GN=AOC4 PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.328e-59
Identity = 116/212 (54.72%), Postives = 150/212 (70.75%), Query Frame = 1
Query:   97 MACSSAALRTISSASVKLANSTSLTKSSSIL-VPFKLNNPSLITQCPHLQAATSCNFTVPKRSFTCRSQANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVN-SLGDLVPFSNKLYTGDLQKRVGITAGICILIENKPEKKGDRYEATYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKAVYTFYL 726
            M  +S+A  +IS  +++  +    +  S+ L      +N  + +  P L        +     F     ++S+D  RPTK+QEL+VYE NE DR SPA L+L +KP    LGDLVPF+NKLYTGDL KR+GITAG+C+LI++ PEKKGDR+EA+YSFYFGDYGHI+VQGPYLTYEDT+LA+TGGSG+FEG YGQVKL+QLV+P K  YTFYL
Sbjct:    1 MIMASSAAASISMITLRNLSRNHQSHQSTFLGFSRSFHNQRISSNSPGLSTRARSTTSSTGGFFRTICSSSSNDYSRPTKIQELNVYEFNEGDRNSPAVLKLGKKPDQLCLGDLVPFTNKLYTGDLTKRIGITAGLCVLIQHVPEKKGDRFEASYSFYFGDYGHISVQGPYLTYEDTFLAITGGSGVFEGAYGQVKLRQLVYPTKLFYTFYL 212          
BLAST of FC931008 vs. ExPASy Swiss-Prot
Match: AOC3_ARATH (Allene oxide cyclase 3, chloroplastic OS=Arabidopsis thaliana GN=AOC3 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.509e-58
Identity = 123/219 (56.16%), Postives = 157/219 (71.69%), Query Frame = 1
Query:   97 MACSSAALRTISSASVKLANSTSLTKSS--SILVPFK--LNNPSLITQCPHL----QAATSCNFTVPKRSFTCRSQANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVN-SLGDLVPFSNKLYTGDLQKRVGITAGICILIENKPEKKGDRYEATYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKAVYTFYL 726
            MA SSAA+ ++ S S+   N+ S    S  S L+ F     N  + +  P      ++ TS N  V +  F   +    +++ RP+K+QEL+VYE+NE DR SPA L+L +KP    LGDLVPF+NKLYTGDL+KRVGITAG+C+LI++ PEK GDR+EA+YSFYFGDYGH++VQG YLTYEDT+LAVTGGSGIFEG YGQVKL+QLV+P K  YTFYL
Sbjct:    1 MASSSAAM-SLESISMTTLNNLSRNHQSHRSSLLGFSRSFQNLGISSNGPDFSSRSRSTTSKNLNVTRAFFW--NWGKKTENSRPSKIQELNVYELNEGDRNSPAVLKLGKKPTELCLGDLVPFTNKLYTGDLKKRVGITAGLCVLIQHVPEKSGDRFEASYSFYFGDYGHLSVQGQYLTYEDTFLAVTGGSGIFEGAYGQVKLRQLVYPTKLFYTFYL 216          
BLAST of FC931008 vs. ExPASy Swiss-Prot
Match: AOC2_ARATH (Allene oxide cyclase 2, chloroplastic OS=Arabidopsis thaliana GN=AOC2 PE=1 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.391e-58
Identity = 119/213 (55.87%), Postives = 152/213 (71.36%), Query Frame = 1
Query:   97 MACSSAALRTISSASVKLANSTSLTKSSSILVPFK-LNNPSLITQCPHLQAATSCNFTVPKRSFTCR--SQANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQKRVGITAGICILIENKPEKKGDRYEATYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKAVYTFYL 726
            MA S+ +L++IS  ++   +       SS+L   K   N  + +        +S  FT  K     R  SQ  + ++PRP+KVQEL VYEINE DR SP  L+ +   +  LGDLVPF+NKLYTGDL+KRVGITAG+C++IE+ PEKKG+R+EATYSFYFGDYGH++VQGPYLTYED++LA+TGG+GIFEG YGQVKLQQLV+P K  YTFYL
Sbjct:    1 MASSAVSLQSISMTTLNNLSCNQQFHRSSLLGSSKSFQNLGISSNGSDFSYPSS--FTAKKNLTASRALSQNGNIENPRPSKVQELSVYEINELDRHSPKILKNAFSLMFGLGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYL 211          
BLAST of FC931008 vs. ExPASy Swiss-Prot
Match: AOC1_ARATH (Allene oxide cyclase 1, chloroplastic OS=Arabidopsis thaliana GN=AOC1 PE=1 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 9.782e-58
Identity = 118/214 (55.14%), Postives = 155/214 (72.43%), Query Frame = 1
Query:   97 MACSSAALRTISSASVK-LANSTSLTKSSSILVPFKLNNPSLITQCPHLQAATSCNFTVPKRSFTCRSQANS---SDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQKRVGITAGICILIENKPEKKGDRYEATYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKAVYTFYL 726
            MA S+ +L++IS  ++  L+ S    +SS +       N  + +  P   + TS  FT  K+    R+ + +   +++PRP+KVQEL VYEIN+ DR SP  L+ +      LGDLVPF+NKLYTGDL+KRVGITAG+C++IE+ PEK GDR+EATYSFYFGDYGH++VQGPYLTYED++LA+TGG+GIFEG YGQVKLQQLV+P K  YTFYL
Sbjct:    1 MASSTISLQSISMTTLNNLSYSKQFHRSSLLGFSKSFQNFGISSNGPGSSSPTS--FTPKKKLTPTRALSQNLGNTENPRPSKVQELSVYEINDLDRHSPKILKNAFSFRFGLGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKNGDRFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYL 212          
The following BLAST results are available for this feature:
BLAST of FC931008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
AOC4_ARATH2.328e-5954.72Allene oxide cyclase 4, chloroplastic OS=Arabidops... [more]
AOC3_ARATH1.509e-5856.16Allene oxide cyclase 3, chloroplastic OS=Arabidops... [more]
AOC2_ARATH4.391e-5855.87Allene oxide cyclase 2, chloroplastic OS=Arabidops... [more]
AOC1_ARATH9.782e-5855.14Allene oxide cyclase 1, chloroplastic OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionC34100D08EF PostHarvP1 Citrus clementina cDNA clone C34100D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931008 ID=FC931008; Name=FC931008; organism=Citrus clementina; type=EST; length=727bp
GACATTTTCCCATCAGAAAATTCCCTCACTTTCTCTCCTCCCAAACAGTC
AAAACCTCATTTAACAACAGAAATTATCAACAAAAGATTATCCCCAATGG
CTTGTTCAAGCGCTGCTTTGAGAACCATCTCTTCTGCTTCTGTCAAGCTA
GCCAATTCAACATCACTAACCAAATCATCATCAATTTTAGTACCATTTAA
GCTGAATAATCCTTCTCTAATCACTCAATGCCCCCACCTTCAAGCCGCCA
CAAGCTGCAACTTCACAGTACCCAAAAGATCTTTCACTTGCAGAAGCCAA
GCTAACTCATCAGATGATCCCAGACCCACCAAGGTTCAAGAACTTCATGT
GTATGAGATCAACGAGCGAGATCGTGGCAGTCCAGCTTATCTTCGCTTGA
GCCAGAAACCTGTGAATTCACTTGGTGATCTTGTCCCTTTTAGCAACAAA
TTATATACCGGAGACCTGCAAAAGAGGGTGGGAATAACAGCGGGTATATG
CATTTTGATCGAAAACAAACCAGAAAAGAAAGGTGACCGATATGAAGCAA
CTTACAGCTTCTACTTTGGAGACTATGGTCACATAGCTGTGCAAGGACCG
TATTTGACCTATGAGGACACTTATCTGGCTGTGACTGGTGGATCCGGCAT
CTTCGAGGGAGTGTATGGGCAGGTTAAGCTGCAGCAACTTGTGTTTCCTT
TTAAAGCTGTTTACACATTTTATTTGA
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