FC931010

Overview
NameFC931010
Unique NameFC931010
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931010 vs. ExPASy Swiss-Prot
Match: SYP22_ARATH (Syntaxin-22 OS=Arabidopsis thaliana GN=SYP22 PE=1 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.093e-64
Identity = 133/184 (72.28%), Postives = 148/184 (80.43%), Query Frame = 3
Query:  123 MSFQDLEAGRPVSSLRRNLVNGKQDSTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASETDHHAQVSXXXXXXXXXXXXXFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTAHELDISSDRSAEQHALLVESRRQEVVLLDNEIAFNEAII 674
            MSFQDLE+GR  S+ + N   G+QDSTQAVASGIFQINT VSTFQRLVNTLGTPKDTPELREK+HKTRLHIGQLVKDTSAKLK+ASETDH + V+             FQAVLKEFQKAQ+ AAERET YTPFVPQ+ LPSSYTA E+    D+  EQ A L ES+RQE+VLLDNEIAFNEA+I
Sbjct:    1 MSFQDLESGRGRSTRKFN--GGRQDSTQAVASGIFQINTGVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKEASETDHQSGVNPSKKIADAKLARDFQAVLKEFQKAQQTAAERETTYTPFVPQSALPSSYTAGEV----DKVPEQRAQLQESKRQELVLLDNEIAFNEAVI 178          
BLAST of FC931010 vs. ExPASy Swiss-Prot
Match: SYP23_ARATH (Syntaxin-23 OS=Arabidopsis thaliana GN=SYP23 PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 6.091e-64
Identity = 130/187 (69.52%), Postives = 147/187 (78.61%), Query Frame = 3
Query:  123 MSFQDLEAGRPVSSLRRNLVNG---KQDSTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASETDHHAQVSXXXXXXXXXXXXXFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTAHELDISSDRSAEQHALLVESRRQEVVLLDNEIAFNEAII 674
            MSFQDLEAGR  S      +NG   +QD+TQ VASGIFQINT+VSTF RLVNTLGTPKDTPELREK+HKTRL+IGQLVKDTSAKLK+ASETDH   V+             FQAVLKEFQKAQRLAAERET Y P V +  LPSSYT+ E+D++ D+  EQ ALLVES+RQE+VLLDNEIAFNEA+I
Sbjct:    1 MSFQDLEAGRGRSLASSRNINGGGSRQDTTQDVASGIFQINTSVSTFHRLVNTLGTPKDTPELREKLHKTRLYIGQLVKDTSAKLKEASETDHQRGVNQKKKIVDAKLAKDFQAVLKEFQKAQRLAAERETVYAPLVHKPSLPSSYTSSEIDVNGDKHPEQRALLVESKRQELVLLDNEIAFNEAVI 187          
BLAST of FC931010 vs. ExPASy Swiss-Prot
Match: SYP21_ARATH (Syntaxin-21 OS=Arabidopsis thaliana GN=SYP21 PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.610e-48
Identity = 111/191 (58.12%), Postives = 134/191 (70.16%), Query Frame = 3
Query:  123 MSFQDLEAGRPVSSLRRNLVNGKQ-------DSTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASETDHHAQVSXXXXXXXXXXXXXFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTAHELDISSDRSAEQHALLVESRRQEVVLLDNEIAFNEAII 674
            MSFQDLEAG    +  R    G+Q       D +Q VA+GIF+I+TAV++F RLVN++GTPKDT ELR+K+ KTRL I +LVK+TSAKLK+ASE D H   S             FQ+VLKEFQKAQRLAAERE  YTP V + + P+SY A ELD  S R ++Q ALL++SRRQEVV LDNEI FNEAII
Sbjct:    1 MSFQDLEAGTRSPAPNR-FTGGRQQRPSSRGDPSQEVAAGIFRISTAVNSFFRLVNSIGTPKDTLELRDKLQKTRLQISELVKNTSAKLKEASEADLHGSASQIKKIADAKLAKDFQSVLKEFQKAQRLAAEREITYTPVVTKEI-PTSYNAPELDTESLRISQQQALLLQSRRQEVVFLDNEITFNEAII 189          
BLAST of FC931010 vs. ExPASy Swiss-Prot
Match: SYP24_ARATH (Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.860e-26
Identity = 66/120 (55.00%), Postives = 81/120 (67.50%), Query Frame = 3
Query:  315 HKTRLHIGQLVKDTSAKLKQASETDHHAQVSXXXXXXXXXXXXXFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTAHELDISSDRSAEQHALLVESRRQEVVLLDNEIAFNEAII 674
            HK  L IGQLVKDTSA L++ASETDH   V+             F+A LKEFQKAQ +  ERET+Y PF P+     S+++ E+DI  DRS EQ  +L+ESRRQE+VLLDNEI+ NEA I
Sbjct:  154 HKKMLLIGQLVKDTSANLREASETDHRRDVAQSKKIADAKLAKDFEAALKEFQKAQHITVERETSYIPFDPK----GSFSSSEVDIGYDRSQEQR-VLMESRRQEIVLLDNEISLNEARI 268          
The following BLAST results are available for this feature:
BLAST of FC931010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SYP22_ARATH2.093e-6472.28Syntaxin-22 OS=Arabidopsis thaliana GN=SYP22 PE=1 ... [more]
SYP23_ARATH6.091e-6469.52Syntaxin-23 OS=Arabidopsis thaliana GN=SYP23 PE=2 ... [more]
SYP21_ARATH1.610e-4858.12Syntaxin-21 OS=Arabidopsis thaliana GN=SYP21 PE=1 ... [more]
SYP24_ARATH3.860e-2655.00Putative syntaxin-24 OS=Arabidopsis thaliana GN=SY... [more]
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Properties
Property NameValue
Genbank descriptionC34100D10EF PostHarvP1 Citrus clementina cDNA clone C34100D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931010 ID=FC931010; Name=FC931010; organism=Citrus clementina; type=EST; length=675bp
GCGTTTCCTTTTTTCTTCATTTCTCCTTTCCCATAATTCTCGCGGAGTTC
TCTTGTATTCCCGTTGGGCTCTCAGCTATCCTTTTGTCCAATCACACCAA
ATATCAATCGGCTTTGGAGAAAATGAGCTTTCAAGATCTGGAGGCGGGGC
GGCCGGTGAGTTCGTTGAGGAGAAATTTGGTGAATGGAAAGCAAGACTCA
ACGCAGGCCGTTGCTTCTGGAATCTTCCAGATCAATACCGCCGTCTCCAC
GTTTCAAAGACTCGTTAATACGCTTGGGACTCCCAAGGATACGCCCGAGC
TTCGCGAGAAGATACACAAGACAAGGCTACATATCGGGCAATTGGTGAAG
GATACTTCAGCTAAACTTAAACAAGCTAGTGAAACAGATCATCATGCTCA
AGTTAGTGCCGACAAGAAGATTGCAGATGCTAAACTAGCCAAAGATTTTC
AAGCAGTTTTAAAAGAGTTTCAGAAGGCTCAAAGGCTTGCTGCTGAAAGG
GAAACAGCATACACTCCTTTTGTTCCACAGGCAGTTCTTCCTTCCAGCTA
TACAGCCCATGAACTAGATATAAGTTCAGATAGGAGTGCAGAACAGCATG
CGCTTCTTGTGGAATCTAGAAGACAGGAGGTTGTGCTATTGGACAATGAG
ATTGCCTTCAATGAGGCTATAATTG
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