FC931011
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: GRP2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 1.861e-24 Identity = 60/119 (50.42%), Postives = 85/119 (71.43%), Query Frame = 3 Query: 30 MAFFSKVGNILRQTAGKRISCESFISNPSIYQAIRCMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386 MAF +K+G +LRQ IS + S+ ++R MS+ KLF+GG+S+ DD SLR+AFA +G V +A++I+DRETGRSRGFGFV F+ A++AI +DG++L+GR +RVN A DR Sbjct: 1 MAFCNKLGGLLRQN----ISSNGNVPVTSMLGSLRLMST-KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR 114
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 6.848e-19 Identity = 45/79 (56.96%), Postives = 59/79 (74.68%), Query Frame = 3 Query: 150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386 + FVGG+ + DD SL+ AF+KYG V +++II DRETGRSRGFGFVTF++ E AI+A++GQDL GR + VN A R Sbjct: 7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQSR 85
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 8.944e-19 Identity = 42/79 (53.16%), Postives = 61/79 (77.22%), Query Frame = 3 Query: 150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386 +++VG + +++D+ L + F+++G V EAR++ DRETGRSRGFGFVT S V+E + AI ALDGQ+L GR +RVN A +R Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323 HSP 2 Score: 75.485 bits (184), Expect = 1.478e-13 Identity = 37/80 (46.25%), Postives = 56/80 (70.00%), Query Frame = 3 Query: 147 SKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386 +KLFVG ++Y+++ +L F + G V A +I +RET +SRGFGFVT S+V+EA +A++ + DL+GR + VN AA R Sbjct: 150 AKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPR 229
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 2.602e-18 Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 3 Query: 144 SSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADRNR 392 S +++VG I + +DD L + F+++G V AR++ DRETGRSRGFGFVT ++ E S AI LDGQ L GR +RVN A DR+R Sbjct: 229 SYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRSR 311 HSP 2 Score: 76.6406 bits (187), Expect = 6.633e-14 Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = 3 Query: 147 SKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386 +KLFVG + Y++D L F + G V A +I +R+T +SRGFGFVT STVEEA A++ + D++GR + VN AA R Sbjct: 136 AKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARR 215
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 7.572e-18 Identity = 40/84 (47.62%), Postives = 66/84 (78.57%), Query Frame = 3 Query: 141 SSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADRNR 392 SS++++VG +S+ +DD +L+E F++ G V +A+++ DR++GRSRGFGFVT+S+ +E + AI +L+G DL GR +RV+ A +R R Sbjct: 206 SSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEERPR 289 HSP 2 Score: 70.4774 bits (171), Expect = 4.754e-12 Identity = 34/74 (45.95%), Postives = 48/74 (64.86%), Query Frame = 3 Query: 150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVN 371 KLFVG + +++D +L F + G V +I D+ +GRSRGFGFVT ST EE +A Q +G ++ GR +RVN Sbjct: 89 KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVN 162
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 9.889e-18 Identity = 40/84 (47.62%), Postives = 66/84 (78.57%), Query Frame = 3 Query: 141 SSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADRNR 392 SS++++VG +S+ +DD +L+E F++ G V +A+++ DR++GRSRGFGFVT+S+ +E + AI +L+G DL GR +RV+ A +R R Sbjct: 205 SSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEERPR 288 HSP 2 Score: 72.4034 bits (176), Expect = 1.251e-12 Identity = 35/74 (47.30%), Postives = 48/74 (64.86%), Query Frame = 3 Query: 150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVN 371 KLFVG + +++D +L F + G V +I D+ TGRSRGFGFVT ST EE +A Q +G ++ GR +RVN Sbjct: 88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVN 161
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 9.889e-18 Identity = 43/83 (51.81%), Postives = 60/83 (72.29%), Query Frame = 3 Query: 144 SSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADRNR 392 S +++VG + +++D + L + F+++G V AR++ DRETGRSRGFGFVT S+ E + AI ALDGQ L GR VRVN A +R R Sbjct: 148 SCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEERPR 230 HSP 2 Score: 83.5741 bits (205), Expect = 5.426e-16 Identity = 42/80 (52.50%), Postives = 54/80 (67.50%), Query Frame = 3 Query: 147 SKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386 +KLFVG + Y++D L F G V A +I +RET RSRGFGFVT STVEEA A++ L+G D+ GR++ VN AA R Sbjct: 55 AKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPR 134
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: RT19_ARATH (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana GN=RPS19 PE=1 SV=2) HSP 1 Score: 88.9669 bits (219), Expect = 1.292e-17 Identity = 48/118 (40.68%), Postives = 78/118 (66.10%), Query Frame = 3 Query: 30 MAFFSKVGNILRQTAGKRISCESFISNPSIYQAIRCMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAAD 383 MAF +K+G +Q +S S+ ++R MS+ KL++GG+S D++SL++AF+ + V EAR++ ++ TGRSRG+GFV F + + A+SAI A++GQ+L+G + VN A D Sbjct: 1 MAFCTKLGGHWKQGVNVPVS--------SMLGSLRYMST-KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAKD 109
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: RBM3_MOUSE (Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 2.203e-17 Identity = 38/81 (46.91%), Postives = 61/81 (75.31%), Query Frame = 3 Query: 150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADRNR 392 KLFVGG+++N D+ +L + F+ +G ++E ++ DRET RSRGFGF+TF+ E AS A++A++G+ L GR++RV++A R Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKSAR 87
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: CIRBP_PONAB (Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 2.203e-17 Identity = 37/76 (48.68%), Postives = 59/76 (77.63%), Query Frame = 3 Query: 150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377 KLFVGG+S++ ++ SL + F+KYG ++E ++ DRET RSRGFGFVTF +++A A+ A++G+ + GR++RV+ A Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82 The following BLAST results are available for this feature:
BLAST of FC931011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 85
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931011 ID=FC931011; Name=FC931011; organism=Citrus clementina; type=EST; length=495bpback to top |