FC931011

Overview
NameFC931011
Unique NameFC931011
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length495
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931011_ssr444 microsatellite FC931011_ssr444:444..461. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: GRP2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.861e-24
Identity = 60/119 (50.42%), Postives = 85/119 (71.43%), Query Frame = 3
Query:   30 MAFFSKVGNILRQTAGKRISCESFISNPSIYQAIRCMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386
            MAF +K+G +LRQ     IS    +   S+  ++R MS+ KLF+GG+S+  DD SLR+AFA +G V +A++I+DRETGRSRGFGFV F+    A++AI  +DG++L+GR +RVN A DR
Sbjct:    1 MAFCNKLGGLLRQN----ISSNGNVPVTSMLGSLRLMST-KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR 114          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.848e-19
Identity = 45/79 (56.96%), Postives = 59/79 (74.68%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386
            + FVGG+ +  DD SL+ AF+KYG V +++II DRETGRSRGFGFVTF++ E    AI+A++GQDL GR + VN A  R
Sbjct:    7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQSR 85          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.944e-19
Identity = 42/79 (53.16%), Postives = 61/79 (77.22%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386
            +++VG + +++D+  L + F+++G V EAR++ DRETGRSRGFGFVT S V+E + AI ALDGQ+L GR +RVN A +R
Sbjct:  245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323          

HSP 2 Score: 75.485 bits (184), Expect = 1.478e-13
Identity = 37/80 (46.25%), Postives = 56/80 (70.00%), Query Frame = 3
Query:  147 SKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386
            +KLFVG ++Y+++  +L   F + G V  A +I +RET +SRGFGFVT S+V+EA +A++  +  DL+GR + VN AA R
Sbjct:  150 AKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPR 229          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.602e-18
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 3
Query:  144 SSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADRNR 392
            S +++VG I + +DD  L + F+++G V  AR++ DRETGRSRGFGFVT ++  E S AI  LDGQ L GR +RVN A DR+R
Sbjct:  229 SYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRSR 311          

HSP 2 Score: 76.6406 bits (187), Expect = 6.633e-14
Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = 3
Query:  147 SKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386
            +KLFVG + Y++D   L   F + G V  A +I +R+T +SRGFGFVT STVEEA  A++  +  D++GR + VN AA R
Sbjct:  136 AKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARR 215          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.572e-18
Identity = 40/84 (47.62%), Postives = 66/84 (78.57%), Query Frame = 3
Query:  141 SSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADRNR 392
            SS++++VG +S+ +DD +L+E F++ G V +A+++ DR++GRSRGFGFVT+S+ +E + AI +L+G DL GR +RV+ A +R R
Sbjct:  206 SSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEERPR 289          

HSP 2 Score: 70.4774 bits (171), Expect = 4.754e-12
Identity = 34/74 (45.95%), Postives = 48/74 (64.86%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVN 371
            KLFVG + +++D  +L   F + G V    +I D+ +GRSRGFGFVT ST EE  +A Q  +G ++ GR +RVN
Sbjct:   89 KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVN 162          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.889e-18
Identity = 40/84 (47.62%), Postives = 66/84 (78.57%), Query Frame = 3
Query:  141 SSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADRNR 392
            SS++++VG +S+ +DD +L+E F++ G V +A+++ DR++GRSRGFGFVT+S+ +E + AI +L+G DL GR +RV+ A +R R
Sbjct:  205 SSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEERPR 288          

HSP 2 Score: 72.4034 bits (176), Expect = 1.251e-12
Identity = 35/74 (47.30%), Postives = 48/74 (64.86%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVN 371
            KLFVG + +++D  +L   F + G V    +I D+ TGRSRGFGFVT ST EE  +A Q  +G ++ GR +RVN
Sbjct:   88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVN 161          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.889e-18
Identity = 43/83 (51.81%), Postives = 60/83 (72.29%), Query Frame = 3
Query:  144 SSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADRNR 392
            S +++VG + +++D + L + F+++G V  AR++ DRETGRSRGFGFVT S+  E + AI ALDGQ L GR VRVN A +R R
Sbjct:  148 SCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEERPR 230          

HSP 2 Score: 83.5741 bits (205), Expect = 5.426e-16
Identity = 42/80 (52.50%), Postives = 54/80 (67.50%), Query Frame = 3
Query:  147 SKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADR 386
            +KLFVG + Y++D   L   F   G V  A +I +RET RSRGFGFVT STVEEA  A++ L+G D+ GR++ VN AA R
Sbjct:   55 AKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPR 134          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: RT19_ARATH (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana GN=RPS19 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.292e-17
Identity = 48/118 (40.68%), Postives = 78/118 (66.10%), Query Frame = 3
Query:   30 MAFFSKVGNILRQTAGKRISCESFISNPSIYQAIRCMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAAD 383
            MAF +K+G   +Q     +S        S+  ++R MS+ KL++GG+S   D++SL++AF+ +  V EAR++ ++ TGRSRG+GFV F + + A+SAI A++GQ+L+G  + VN A D
Sbjct:    1 MAFCTKLGGHWKQGVNVPVS--------SMLGSLRYMST-KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAKD 109          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: RBM3_MOUSE (Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.203e-17
Identity = 38/81 (46.91%), Postives = 61/81 (75.31%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYAADRNR 392
            KLFVGG+++N D+ +L + F+ +G ++E  ++ DRET RSRGFGF+TF+  E AS A++A++G+ L GR++RV++A    R
Sbjct:    7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKSAR 87          
BLAST of FC931011 vs. ExPASy Swiss-Prot
Match: CIRBP_PONAB (Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.203e-17
Identity = 37/76 (48.68%), Postives = 59/76 (77.63%), Query Frame = 3
Query:  150 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQDLHGRRVRVNYA 377
            KLFVGG+S++ ++ SL + F+KYG ++E  ++ DRET RSRGFGFVTF  +++A  A+ A++G+ + GR++RV+ A
Sbjct:    7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
The following BLAST results are available for this feature:
BLAST of FC931011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GRP2_ARATH1.861e-2450.42Glycine-rich RNA-binding protein 2, mitochondrial ... [more]
GRP_HORVU6.848e-1956.96Glycine-rich RNA-binding protein blt801 OS=Hordeum... [more]
ROC3_ARATH8.944e-1953.1631 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
ROC4_NICSY2.602e-1853.0131 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC2_NICPL7.572e-1847.6231 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC2_NICSY9.889e-1847.6229 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
ROC1_SPIOL9.889e-1851.8128 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
RT19_ARATH1.292e-1740.6840S ribosomal protein S19, mitochondrial OS=Arabid... [more]
RBM3_MOUSE2.203e-1746.91Putative RNA-binding protein 3 OS=Mus musculus GN=... [more]
CIRBP_PONAB2.203e-1748.68Cold-inducible RNA-binding protein OS=Pongo abelii... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34100D11EF PostHarvP1 Citrus clementina cDNA clone C34100D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931011 ID=FC931011; Name=FC931011; organism=Citrus clementina; type=EST; length=495bp
GGTTTCTTCTTTCACAAAAGGTTATTATAATGGCTTTCTTTAGTAAGGTT
GGGAATATACTTAGGCAGACTGCTGGCAAGCGGATCAGTTGTGAATCATT
TATATCCAACCCATCCATCTACCAAGCAATACGATGCATGTCATCTTCGA
AACTTTTTGTTGGAGGCATTTCATATAACATGGATGACAATAGCTTGAGA
GAAGCTTTTGCTAAATATGGTTATGTCAATGAAGCAAGAATCATTTTGGA
TCGTGAAACTGGTAGATCCAGAGGATTTGGTTTTGTCACATTCAGCACTG
TGGAGGAGGCGTCTAGTGCCATCCAAGCCTTGGATGGACAGGATCTTCAT
GGCCGTCGTGTAAGGGTGAATTATGCAGCTGATAGAAATCGTGGCTATGG
AGGTGGCGGCTTTGGAGGCGGTGGTTACGGAGGTGGTGGCTACGGTGGTG
GTGGTGGTGGTTATGGAGGTGGTGGCTATGGTGGTGGAGGTTATG
back to top