FC931012

Overview
NameFC931012
Unique NameFC931012
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length511
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15256 contig Ccv1_Contig15256:1..511. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC931012 vs. ExPASy Swiss-Prot
Match: SC61B_ARATH (Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana GN=At2g45070 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.953e-17
Identity = 41/44 (93.18%), Postives = 44/44 (100.00%), Query Frame = 2 
Query:  191 TMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAVLHVMGKLYFVR 322
            +MLQFYTDDAPGLKISPNVVL+MSIGFIAFVAVLHVMGKLYFV+
Sbjct:   39 SMLQFYTDDAPGLKISPNVVLIMSIGFIAFVAVLHVMGKLYFVK 82
The following BLAST results are available for this feature:
BLAST of FC931012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SC61B_ARATH6.953e-1793.18Protein transport protein Sec61 subunit beta OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionC34100E01EF PostHarvP1 Citrus clementina cDNA clone C34100E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931012 ID=FC931012; Name=FC931012; organism=Citrus clementina; type=EST; length=511bp
CCGGGGACGAACAAAATTTGCAATTCCTGCTTCTTCGACGATCTGAAATT
TTTCGAGTGGAGTCAAAATGGCTTTGACCGGACCTGCACCGCCCAGAGGA
AGCGCAGCAGCTACTGCAAATATGCGTAGGAGGAGGACGAGCAGTGCTGG
GGCTGGGGCTGGGGCTGGGGCCTCGGGAGGTGCAGCTGGTACCATGCTCC
AGTTTTACACAGATGATGCTCCAGGACTTAAGATCTCTCCGAATGTTGTG
CTTGTCATGAGCATTGGATTCATTGCCTTTGTTGCTGTTCTTCATGTCAT
GGGAAAGCTTTACTTTGTCCGAAAAGAGTAGAGCAGCCTGAATTTGATAG
CATACTAAATCTAAATTCGGTATGATGTGTCTGGATTTTGAAAACCAGAT
TTAGCTTTCGTTCAGTTTACTGGTGGTTGAGGTTGCTTAATGTAGTTGTA
ACTCTGGAGAGAATGACTCTTATTCAATGCCTTAAAGACTGCAAAATATC
AATCTTTTCTT
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