FC931015

Overview
NameFC931015
Unique NameFC931015
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14610 contig Ccv1_Contig14610:825..1555. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931015 vs. ExPASy Swiss-Prot
Match: AB39G_ARATH (ABC transporter G family member 39 OS=Arabidopsis thaliana GN=ABCG39 PE=2 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 6.780e-83
Identity = 141/242 (58.26%), Postives = 182/242 (75.21%), Query Frame = 2
Query:    5 SVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYLMWASFIIFTLYGMMIVALTPGXAVATIVLSFFLSVWNLFSGFLVARSDIP 730
            S+E+Q+ +DFA+++++SSL++RN+ELIK+LSTPPPGS D+YF TKY+Q F TQ +ACFWKQYWSYWR+PQYNAIRF MT+VI + FGLI+W  G KT  +QDL N FGAMY+  +FLG  NA +V P I +ERTV+YRE+AAGM++A+PYA++QVA                  +MIG  W + KF  F+Y M  SFI FTLYGMM++ALTP   +A I +SFFLS+WNLFSGFL+ R  IP
Sbjct: 1127 SMESQMSLDFAQIFSNSSLYRRNQELIKDLSTPPPGSKDVYFKTKYAQSFSTQTKACFWKQYWSYWRHPQYNAIRFLMTVVIGVLFGLIFWQIGTKTENEQDLNNFFGAMYAAVLFLGALNAATVQPAIAIERTVFYREKAAGMYSAIPYAISQVAVEIMYNTIQTGVYTLILYSMIGCNWTMAKFLWFYYYMLTSFIYFTLYGMMLMALTPNYQIAGICMSFFLSLWNLFSGFLIPRPQIP 1368          
BLAST of FC931015 vs. ExPASy Swiss-Prot
Match: AB34G_ARATH (ABC transporter G family member 34 OS=Arabidopsis thaliana GN=ABCG34 PE=2 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 9.790e-82
Identity = 139/242 (57.44%), Postives = 180/242 (74.38%), Query Frame = 2
Query:    5 SVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYLMWASFIIFTLYGMMIVALTPGXAVATIVLSFFLSVWNLFSGFLVARSDIP 730
            S+E+Q+ +DFA+++ +SS+++RN+ELIKELSTPPPGS+DLYF TKY+QPF TQ +ACFWK YWS WR PQYNAIRF MT+VI + FGL++W  G K  K+QDL N FGAMY+  +FLG +NA +V P + +ERTV+YRE+AAGM++A+PYA++QVA                  +MIG+ W + KF  F+Y M   F+ FTLYGMM+VALTP   +A I LSFFLS WNLFSGFL+ R  IP
Sbjct: 1126 SMESQMSVDFAQIFVNSSVNRRNQELIKELSTPPPGSNDLYFRTKYAQPFSTQTKACFWKMYWSNWRYPQYNAIRFLMTVVIGVLFGLLFWQTGTKIEKEQDLNNFFGAMYAAVLFLGATNAATVQPAVAIERTVFYREKAAGMYSAIPYAISQVAVEIMYNTIQTGVYTLILYSMIGYDWTVVKFFWFYYYMLTCFVYFTLYGMMLVALTPNYQIAGICLSFFLSFWNLFSGFLIPRPQIP 1367          
BLAST of FC931015 vs. ExPASy Swiss-Prot
Match: PDR2_NICPL (Pleiotropic drug resistance protein 2 OS=Nicotiana plumbaginifolia GN=PDR2 PE=2 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 4.548e-79
Identity = 140/242 (57.85%), Postives = 179/242 (73.97%), Query Frame = 2
Query:    5 SVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYLMWASFIIFTLYGMMIVALTPGXAVATIVLSFFLSVWNLFSGFLVARSDIP 730
            S+E QL +DFAEVYA+S+L+QRN+ LIKELSTP   S DLYFPT+YSQ F+TQ +ACFWKQ+WSYWRN QYNAIRF MT++I I FG+I+W+KG +  +QQDL NL GA Y+  +FLG +NA +V  V+ +ERTV+YRERAAGM++ +PYA AQVA                  +MIG++W   KF  F+Y ++  F  F++YGMM+VALTPG  +A IV+SFFLS WNLFSGFL+ R  IP
Sbjct: 1133 SMEAQLVVDFAEVYANSNLYQRNQLLIKELSTPATCSKDLYFPTQYSQSFITQCKACFWKQHWSYWRNSQYNAIRFFMTVIIGILFGVIFWNKGNQIHRQQDLLNLLGATYAAVMFLGATNASAVQSVVAIERTVFYRERAAGMYSELPYAFAQVAIETIYVAIQTFVYSLLLFSMIGYQWTAVKFFYFYYFIFMCFTYFSMYGMMVVALTPGYQIAAIVMSFFLSFWNLFSGFLIPRPLIP 1374          
BLAST of FC931015 vs. ExPASy Swiss-Prot
Match: AB40G_ARATH (ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 8.876e-75
Identity = 134/242 (55.37%), Postives = 167/242 (69.01%), Query Frame = 2
Query:    5 SVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYLMWASFIIFTLYGMMIVALTPGXAVATIVLSFFLSVWNLFSGFLVARSDIP 730
            S E  LG+DFA+VY +S L++RNKELIKELS P PGS DLYFPT+YSQ FLTQ  A  WKQ+WSYWRNP Y A+RF  T+ IA+ FG ++WD G KT  +QDL N  G+MY+  +FLG  NA SV PV+ VERTV+YRE+AAGM++AMPYA AQV                   AMIGF+W   KF  + + M+ SF+ FT YGMM VA+TP   +A++V S F  +WNLFSGFL+ R  +P
Sbjct: 1099 SQEAALGVDFAQVYKNSELYKRNKELIKELSQPAPGSKDLYFPTQYSQSFLTQCMASLWKQHWSYWRNPPYTAVRFLFTIGIALMFGTMFWDLGGKTKTRQDLSNAMGSMYTAVLFLGLQNAASVQPVVNVERTVFYREQAAGMYSAMPYAFAQVFIEIPYVLVQAIVYGLIVYAMIGFEWTAVKFFWYLFFMYGSFLTFTFYGMMAVAMTPNHHIASVVSSAFYGIWNLFSGFLIPRPSMP 1340          
BLAST of FC931015 vs. ExPASy Swiss-Prot
Match: PDR2_ORYSJ (Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 5.753e-74
Identity = 135/243 (55.56%), Postives = 162/243 (66.67%), Query Frame = 2
Query:    2 ISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYLMWASFIIFTLYGMMIVALTPGXAVATIVLSFFLSVWNLFSGFLVARSDIP 730
            IS E  LG+DF ++Y  S L QRNK LI+ELSTPPPGSS+LYFPTKYS  FL Q  AC WK + SYWRNP YNAIR   T VIA+ FG I+WD G KT K QDL N  G+MYS  +F+G  N+ SV PV+ VERTV+YRERAAGM++A PYA  QVA                  +MIGFKW   KF  + + M+ +F+ FT YGMM V LTP   VA+IV S F  +WNLFSGF++ R  +P
Sbjct: 1140 ISQEQALGVDFCDIYRKSELFQRNKALIQELSTPPPGSSELYFPTKYSLSFLNQCLACLWKMHLSYWRNPPYNAIRLFFTTVIALLFGTIFWDLGGKTGKSQDLFNAMGSMYSAVLFIGVLNSQSVQPVVSVERTVFYRERAAGMYSAFPYAFGQVAIEFPYTLVQSIIYGIIVYSMIGFKWTAAKFFWYLFFMFFTFLYFTFYGMMAVGLTPSYHVASIVSSAFYGIWNLFSGFIIPRPKVP 1382          
BLAST of FC931015 vs. ExPASy Swiss-Prot
Match: PDR4_ORYSJ (Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 7.514e-74
Identity = 127/240 (52.92%), Postives = 167/240 (69.58%), Query Frame = 2
Query:   11 ENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYLMWASFIIFTLYGMMIVALTPGXAVATIVLSFFLSVWNLFSGFLVARSDIP 730
            E  LG+DF+E+Y  S L+QRNKELI+ELSTPPPGS+DL FPT+YS+ F+TQ  AC WKQ WSYWRNP Y A+R   T+VIA+ FG ++W+ G +T KQQDL N  G+MY+  +++G  N+ SV PV+ VERTV+YRERAAGM++A PYA  QVA                  +MIGF+W + KF  + + M+ + + FT YGMM V LTP  ++A I+ S F +VWNLFSG+L+ R  IP
Sbjct: 1128 EEMLGVDFSEIYRQSELYQRNKELIEELSTPPPGSTDLNFPTQYSRSFITQCLACLWKQNWSYWRNPSYTAVRLLFTIVIALMFGTMFWNLGTRTKKQQDLFNAMGSMYAAVLYIGVQNSGSVQPVVVVERTVFYRERAAGMYSAFPYAFGQVAIELPYIMVQTLIYGVLVYSMIGFEWTVAKFLWYLFFMYFTLLYFTFYGMMAVGLTPNESIAAIISSAFYNVWNLFSGYLIPRPKIP 1367          
BLAST of FC931015 vs. ExPASy Swiss-Prot
Match: PDR1_TOBAC (Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.417e-72
Identity = 129/240 (53.75%), Postives = 164/240 (68.33%), Query Frame = 2
Query:   11 ENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYLMWASFIIFTLYGMMIVALTPGXAVATIVLSFFLSVWNLFSGFLVARSDIP 730
            E  LGIDF EVY +S L++RNK LI EL  P PGS DL+F T+YSQ F TQ  AC WKQ+WSYWRNP Y A+RF  T  IA+ FG ++WD G K SK QDL N  G+MY+  +FLG  NA SV PV+ +ERTV+YRERAAGM++A+PYA  QV+                  AMIGF+W++GKF  + ++M+ + + FT YGMM VA+TP   VA+IV +FF  VWNLFSGF++ R  +P
Sbjct: 1113 EMMLGIDFTEVYKNSDLYRRNKALISELGVPRPGSKDLHFETQYSQSFWTQCVACLWKQHWSYWRNPAYTAVRFIFTTFIALIFGTMFWDLGTKVSKSQDLLNAMGSMYAAVLFLGVQNASSVQPVVAIERTVFYRERAAGMYSAIPYAFGQVSIEIPYIFVQSVFYGIIVYAMIGFEWDVGKFFWYLFIMFFTLLYFTFYGMMGVAVTPNQNVASIVAAFFYGVWNLFSGFIIPRPRMP 1352          
BLAST of FC931015 vs. ExPASy Swiss-Prot
Match: PDR1_ORYSJ (Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 7.775e-71
Identity = 128/243 (52.67%), Postives = 163/243 (67.08%), Query Frame = 2
Query:    2 ISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYLMWASFIIFTLYGMMIVALTPGXAVATIVLSFFLSVWNLFSGFLVARSDIP 730
            +S E  L +DF ++Y  S L QRNK LI+ELSTPPPGSS+LYFPT+YSQ FL Q  AC WKQ+ SYWRNP YNAIR   T VIA+ FG I+WD G K  + QDL N  G+MY+  +F+G  N  SV PV+ VERTV+YRERAAGM++A+PYA  QVA                  +MIGF+W + KF  + + M+ + + FT YGMM V LTP   VA+IV S F ++WNLF+GF+++R   P
Sbjct: 1144 VSQEQALDVDFCDIYRKSELFQRNKALIQELSTPPPGSSELYFPTQYSQSFLIQCLACLWKQHLSYWRNPPYNAIRLFFTTVIALIFGTIFWDLGGKMGQSQDLFNAMGSMYAAVLFIGVLNGQSVQPVVSVERTVFYRERAAGMYSALPYAFGQVAIEFPYTLVQSVIYSIIVYSMIGFQWTVAKFFWYLFFMFFTLLYFTFYGMMAVGLTPSYHVASIVSSAFYAIWNLFTGFVISRPATP 1386          
BLAST of FC931015 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSJ (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.732e-70
Identity = 128/243 (52.67%), Postives = 159/243 (65.43%), Query Frame = 2
Query:    2 ISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYLMWASFIIFTLYGMMIVALTPGXAVATIVLSFFLSVWNLFSGFLVARSDIP 730
            I  E  LG+DF+++Y  S L+QRNK LIK+LS P P SSDLYFPT+YSQ  LTQ  AC WKQ  SYWRNP YNA+RF  T VIA+ FG I+WD G K +K QDL N  G+MY+  +F+G  N  SV PV+ VERTV+YRERAAGM++A PYA  QV                   AMIGF+W   KF  + + M  + + FT YGMM V LTP   +A+IV S F ++WNLFSGF++ R  +P
Sbjct: 1133 IGQEQALGVDFSDIYKKSELYQRNKALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNAVRFFFTTVIALLFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRERAAGMYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVP 1375          
BLAST of FC931015 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSI (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.732e-70
Identity = 128/243 (52.67%), Postives = 159/243 (65.43%), Query Frame = 2
Query:    2 ISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYLMWASFIIFTLYGMMIVALTPGXAVATIVLSFFLSVWNLFSGFLVARSDIP 730
            I  E  LG+DF+++Y  S L+QRNK LIK+LS P P SSDLYFPT+YSQ  LTQ  AC WKQ  SYWRNP YNA+RF  T VIA+ FG I+WD G K +K QDL N  G+MY+  +F+G  N  SV PV+ VERTV+YRERAAGM++A PYA  QV                   AMIGF+W   KF  + + M  + + FT YGMM V LTP   +A+IV S F ++WNLFSGF++ R  +P
Sbjct: 1133 IGQEQALGVDFSDIYKKSELYQRNKALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNAVRFFFTTVIALLFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRERAAGMYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVP 1375          
The following BLAST results are available for this feature:
BLAST of FC931015 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
AB39G_ARATH6.780e-8358.26ABC transporter G family member 39 OS=Arabidopsis ... [more]
AB34G_ARATH9.790e-8257.44ABC transporter G family member 34 OS=Arabidopsis ... [more]
PDR2_NICPL4.548e-7957.85Pleiotropic drug resistance protein 2 OS=Nicotiana... [more]
AB40G_ARATH8.876e-7555.37ABC transporter G family member 40 OS=Arabidopsis ... [more]
PDR2_ORYSJ5.753e-7455.56Probable pleiotropic drug resistance protein 2 OS=... [more]
PDR4_ORYSJ7.514e-7452.92Pleiotropic drug resistance protein 4 OS=Oryza sat... [more]
PDR1_TOBAC1.417e-7253.75Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
PDR1_ORYSJ7.775e-7152.67Probable pleiotropic drug resistance protein 1 OS=... [more]
PDR3_ORYSJ1.732e-7052.67Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
PDR3_ORYSI1.732e-7052.67Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34100E04EF PostHarvP1 Citrus clementina cDNA clone C34100E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931015 ID=FC931015; Name=FC931015; organism=Citrus clementina; type=EST; length=731bp
CATTTCAGTTGAGAATCAACTGGGAATTGATTTTGCTGAAGTTTATGCTG
ATTCATCGCTTCATCAGAGGAATAAGGAACTTATCAAAGAGCTTAGTACT
CCACCACCTGGCTCGTCAGATCTCTACTTCCCAACCAAATACTCTCAACC
ATTTTTAACCCAATTTAGGGCTTGTTTCTGGAAACAGTATTGGTCTTATT
GGAGAAACCCTCAGTACAATGCTATCCGATTTGGCATGACTCTTGTCATT
GCCATTTTCTTTGGTTTAATCTACTGGGACAAAGGACAGAAGACTTCCAA
ACAACAAGATCTGCAGAATCTTTTTGGAGCTATGTATTCTATTTGTATTT
TCCTTGGAACCAGCAATGCCATATCCGTGATACCCGTTATCTGCGTTGAG
AGAACAGTATACTACCGTGAAAGAGCCGCAGGGATGTTTGCTGCAATGCC
TTATGCACTTGCTCAAGTAGCCGTAGAGATAATATATGTATCAGTTCAAA
GTGTTGTGTATGTTCTTATCCTTTACGCGATGATTGGATTCAAGTGGGAG
CTGGGAAAATTCTGCTTGTTCTTCTACCTCATGTGGGCGTCTTTTATCAT
TTTCACATTGTACGGAATGATGATTGTCGCATTGACTCCTGGCCNAGCAG
TTGCTACCATTGTCTTGTCCTTCTTCCTTAGTGTATGGAACTTGTTCTCC
GGTTTCCTCGTTGCCAGATCGGATATTCCTG
back to top