FC931017

Overview
NameFC931017
Unique NameFC931017
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15250 contig Ccv1_Contig15250:1..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931017 vs. ExPASy Swiss-Prot
Match: DEN5B_DANRE (DENN domain-containing protein 5B OS=Danio rerio GN=dennd5b PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.359e-12
Identity = 44/133 (33.08%), Postives = 70/133 (52.63%), Query Frame = 2
Query:  251 RVLSIESVLALVAGVLLEKQVVVVCPNLGVLSAVVLSLIPMIRPFQWQSLLLPILPAKMLDFLEAPVPFIAGIQTKPADLKIKTSNLVQVNV-LKDQVKSC-----HLPALPQQRELVSELRPIHARLSFESS 631
            R+L +E+++ L   VLLE Q+++   +   L  V   +  ++ PFQWQ + +PILPA +L FL+APVP++ G+Q+K    + K     + N+   D    C       P  P + E + EL  +   LSF  S
Sbjct:  302 RLLGVENLVQLFTCVLLEMQILLYSQDYQRLMVVAEGITTLLFPFQWQHVYVPILPASLLHFLDAPVPYLMGLQSKEGTDRSKLELPQEANLCFVDIDNHCIELPEDFPQFPNRSEFIQELSEV--LLSFGQS 432          
BLAST of FC931017 vs. ExPASy Swiss-Prot
Match: DEN5B_MOUSE (DENN domain-containing protein 5B OS=Mus musculus GN=Dennd5b PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.030e-11
Identity = 35/109 (32.11%), Postives = 62/109 (56.88%), Query Frame = 2
Query:  248 CRVLSIESVLALVAGVLLEKQVVVVCPNLGVLSAVVLSLIPMIRPFQWQSLLLPILPAKMLDFLEAPVPFIAGIQTKPADLKIKTSNLVQVNVLKDQVKSCHLPALPQQ 574
            C +L +E+++ +   VLLE Q ++   +   L  V   +  ++ PFQWQ + +PILPA +L FL+APVP++ G+Q+K    + K     + N+    + + H   LP++
Sbjct:  275 CELLGLENLVQVFTCVLLEMQTLLYSQDYQRLMTVAEGITTLLFPFQWQHVYVPILPASLLHFLDAPVPYLMGLQSKEGTDRSKLELPQEANLCFVDIDN-HFIELPEE 382          
The following BLAST results are available for this feature:
BLAST of FC931017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
DEN5B_DANRE6.359e-1233.08DENN domain-containing protein 5B OS=Danio rerio G... [more]
DEN5B_MOUSE7.030e-1132.11DENN domain-containing protein 5B OS=Mus musculus ... [more]
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Properties
Property NameValue
Genbank descriptionC34100E06EF PostHarvP1 Citrus clementina cDNA clone C34100E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931017 ID=FC931017; Name=FC931017; organism=Citrus clementina; type=EST; length=738bp
GGAAAATAAGAATGATTTGTTGCAAATAGTTTGTGGCTATCATGCTCTGC
CACTTCCAGCACCAGGAAGTGGAATAGTTTTCCTGCCACTTAAGCATTTA
CAGGCTATTGAGTACAACCGACCTCCAATTTGTGCCCTGGGCATCTGTGA
AAAATCCTTGGATTCATTCAAAGCTGCTGAGGTCAATGCAAAGTTGGCTG
CTGCTGAAGAAGCTCTTGCGCTGTCAATATGGGCAACTGCAACCATCTGT
CGAGTTCTGTCAATTGAAAGTGTTCTGGCACTGGTTGCAGGAGTATTACT
GGAAAAACAAGTGGTGGTAGTGTGTCCTAATCTGGGTGTTTTATCAGCTG
TTGTCCTATCTCTGATTCCCATGATTCGTCCATTTCAATGGCAGAGCTTG
CTTCTTCCAATTCTTCCAGCGAAGATGCTTGATTTTCTTGAAGCGCCAGT
TCCCTTTATAGCTGGCATTCAAACCAAACCTGCTGATTTGAAGATAAAAA
CATCTAATCTTGTACAAGTTAATGTTCTCAAGGACCAGGTGAAATCATGT
CACTTGCCAGCACTTCCTCAGCAGAGAGAACTTGTATCTGAACTTAGACC
AATACATGCTCGGCTGTCATTTGAAAGTTCAATTGCTAGAAGACATCCTG
TATATAGGTGCAGTGAAGTGCAGGCTGAAGCTGCAGCCCAATTTTTGAAT
GTCATGGGCAGCTACATGGAGTCTCTTTGTTCAGATTT
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