FC931019

Overview
NameFC931019
Unique NameFC931019
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931019 vs. ExPASy Swiss-Prot
Match: R13L4_ARATH (Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 1.127e-51
Identity = 105/204 (51.47%), Postives = 139/204 (68.14%), Query Frame = 1
Query:   85 MADAVVQIFLERLLITLTEQTGYVNEFRDQFERLQSELQFMQSFLADADRLKRKRNSQTLRTSMAELRELIYEAEDILADCHLQSRD---EDQLSNGWLTFLYPPNISFRYQTGKRLREINDKITYIKQNVASFLNVPLFTRTDTMDARNDQMSRWSCPVYDHTLVVGLEGDTRKIKDWLFEAEEG-ILAIGVVGMGGLGKTTL 684
            M DAVV +FLE+ L  L E+   V+++R Q E LQSEL++MQSFL DA+R  +KR ++TLRT +A+LREL+YEAEDIL DC L   D   E + SN WL+ L+P  +  +Y+  KRL+EIN++IT IK  V  +        T +   R++   RWS PVYDHT VVGLEGD RKIK+WLF + +  +L +  VGMGGLGKTT+
Sbjct:    1 MVDAVVTVFLEKTLNILEEKGRTVSDYRKQLEDLQSELKYMQSFLKDAER--QKRTNETLRTLVADLRELVYEAEDILVDCQLADGDDGNEQRSSNAWLSRLHPARVPLQYKKSKRLQEINERITKIKSQVEPYFEFI----TPSNVGRDNGTDRWSSPVYDHTQVVGLEGDKRKIKEWLFRSNDSQLLIMAFVGMGGLGKTTI 198          

HSP 2 Score: 31.5722 bits (70), Expect = 1.127e-51
Identity = 14/22 (63.64%), Postives = 18/22 (81.82%), Query Frame = 3
Query:  660 GWIGKDHIAQKVFNDREIENWF 725
            G +GK  IAQ+VFND+EIE+ F
Sbjct:  191 GGLGKTTIAQEVFNDKEIEHRF 212          
BLAST of FC931019 vs. ExPASy Swiss-Prot
Match: RGA3_SOLBU (Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.374e-14
Identity = 56/203 (27.59%), Postives = 94/203 (46.31%), Query Frame = 1
Query:   85 MADAVVQIFLERLLITLTEQTGYVNEFRDQFERLQSELQFMQSFLADADRLKRKRNSQTLRTSMAELRELIYEAEDILADCHLQSRDEDQLSNGWLTFLYPPNISFRYQTGKRLREINDKITYIKQNVASFLNVPLFTRTDTMDARNDQMSRWSCPVYDHTLVVGLEGDTRKIKDWLFEA---EEGILAIGVVGMGGLGKTTL 684
            MA+A +Q+ L+ L   +  + G V  F  +F++L S    +Q+ L DA   + K  +  ++  + +L    YE +DIL DC  ++    +     L   +P  I+F Y+ GKR++E+ +K+  I +   +F         D          R +  V     V G E +  +I   L       E +  + ++GMGGLGKTTL
Sbjct:    1 MAEAFLQVLLDNLTFFIQGELGLVFGFEKEFKKLSSMFSMIQAVLEDAQEKQLKYKA--IKNWLQKLNVAAYEVDDILDDCKTEAA---RFKQAVLGRYHPRTITFCYKVGKRMKEMMEKLDAIAEERRNF-------HLDERIIERQAARRQTGFVLTEPKVYGREKEEDEIVKILINNVSYSEEVPVLPILGMGGLGKTTL 191          

HSP 2 Score: 25.409 bits (54), Expect = 3.374e-14
Identity = 11/22 (50.00%), Postives = 14/22 (63.64%), Query Frame = 3
Query:  660 GWIGKDHIAQKVFNDREIENWF 725
            G +GK  +AQ VFND+ I   F
Sbjct:  184 GGLGKTTLAQMVFNDQRITEHF 205          
BLAST of FC931019 vs. ExPASy Swiss-Prot
Match: DRL4_ARATH (Putative disease resistance protein At1g50180 OS=Arabidopsis thaliana GN=At1g50180 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.892e-14
Identity = 63/208 (30.29%), Postives = 105/208 (50.48%), Query Frame = 1
Query:   85 MADAVVQIFLERLLITLTEQTGYVNEFRDQFERLQSELQFMQSFLADADRLKRKRNSQTLRTSMAELRELIYEAEDILADCHLQSRDEDQLSNGW----LTFLYPPNISFRYQTGKRLREINDKITYIKQNVASFLNVPLFTRTDTMDARNDQMSRWSCP-VYDHTLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTLLRR 693
            MA+A+V + +++L   L E+  ++    DQ ++LQ EL+ +  FL DAD  +++  S+ +R  +A +RE  Y+AEDIL    L++    Q         L  +    +S  +  G  +REI  +++ I  ++  F       R     + + +  R S P V +H LV GLE    K+ + L    E +    + GMGGLGKTTL ++
Sbjct:    1 MAEAIVSVTVQKLGQLLLEEPLFLFGIGDQVKQLQDELKRLNCFLKDAD--EKQHESERVRNWVAGIREASYDAEDILEAFFLKAESRKQKGMKRVLRRLACILNEAVSL-HSVGSEIREITSRLSKIAASMLDFGIKESMGREGLSLSDSLREQRQSFPYVVEHNLV-GLEQSLEKLVNDLVSGGEKLRVTSICGMGGLGKTTLAKQ 204          
BLAST of FC931019 vs. ExPASy Swiss-Prot
Match: RGA4_SOLBU (Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.611e-13
Identity = 56/203 (27.59%), Postives = 96/203 (47.29%), Query Frame = 1
Query:   85 MADAVVQIFLERLLITLTEQTGYVNEFRDQFERLQSELQFMQSFLADADRLKRKRNSQTLRTSMAELRELIYEAEDILADCHLQSRDEDQLSNGWLTFLYPPNISFRYQTGKRLREINDKITYIKQNVASFLNVPLFTRTDTMDARNDQMSRWSCPVYDHTLVVGLEGDTRKIKDWLF---EAEEGILAIGVVGMGGLGKTTL 684
            MA+A +Q+ LE L   + ++   +  F  + E+L S    +Q+ L DA   + K   + +   + +L    YE +DIL +C  ++   +Q   G   F +P  I+FR++ G+R++EI +K+  I +    F  +   T      A     +R +  V     V G + +  +I   L       E +    ++GMGGLGKTTL
Sbjct:    1 MAEAFLQVLLENLTSFIGDKLVLIFGFEKECEKLSSVFSTIQAVLQDAQEKQLK--DKAIENWLQKLNSAAYEVDDILGECKNEAIRFEQSRLG---FYHPGIINFRHKIGRRMKEIMEKLDAISEERRKFHFLEKITERQAAAA-----TRETGFVLTEPKVYGRDKEEDEIVKILINNVNVAEELPVFPIIGMGGLGKTTL 193          

HSP 2 Score: 24.2534 bits (51), Expect = 4.611e-13
Identity = 9/22 (40.91%), Postives = 13/22 (59.09%), Query Frame = 3
Query:  660 GWIGKDHIAQKVFNDREIENWF 725
            G +GK  +AQ +FND  +   F
Sbjct:  186 GGLGKTTLAQMIFNDERVTKHF 207          
BLAST of FC931019 vs. ExPASy Swiss-Prot
Match: RPM1_ARATH (Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.060e-11
Identity = 54/209 (25.84%), Postives = 91/209 (43.54%), Query Frame = 1
Query:   85 MADAVVQIFLERLLITLTEQTGYVNEFRDQFERLQSELQFMQSFLADADRL----KRKRNSQTLRTSMAELRELIYEAEDILADCHLQSRDEDQLSNGWLTFLYPPNISFRYQTGKRLREINDKITYIKQNVASFLN-----VPLFTRTDTMDARNDQMSRWSCPVYDHTLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTL 684
            MA A V   + R+L  L  +T  ++    + ++++ EL  M+SFL D  +          +Q  +T +A  R+L Y+ EDIL +           +  W  F +P  +  R+   ++L  +N  I  I  ++  + +       L    D  DA+       S   +    +VG++    K+   L   E   + + VVGMGG GKTTL
Sbjct:    1 MASATVDFGIGRILSVLENETLLLSGVHGEIDKMKKELLIMKSFLEDTHKHGGNGSTTTTTQLFQTFVANTRDLAYQIEDILDEFGYHIHGYRSCAKIWRAFHFPRYMWARHSIAQKLGMVNVMIQSISDSMKRYYHSENYQAALLPPIDDGDAKWVNNISESSLFFSENSLVGIDAPKGKLIGRLLSPEPQRIVVAVVGMGGSGKTTL 209          
BLAST of FC931019 vs. ExPASy Swiss-Prot
Match: RGA2_SOLBU (Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 1.374e-11
Identity = 55/204 (26.96%), Postives = 98/204 (48.04%), Query Frame = 1
Query:   85 MADAVVQIFLERLLITLTEQTGYVNEFRDQFERLQSELQFMQSFLADADRLKRKRNSQTLRTSMAELRELIYEAEDILADCHLQSRDEDQLSNGWLTFLYPPNISFRYQTGKRLREINDKITYIKQNVASF-LNVPLFTRTDTMDARNDQMSRWSCPVYDHTLVVGLEGDTRKIKDWLF---EAEEGILAIGVVGMGGLGKTTL 684
            MA+A +Q+ L+ L   L  +   +  F+D+F+RL S    +Q+ L DA   +++ N++ L   + +L    YE +DIL +   ++    Q   G     +P  I FR++ GKR+ ++  K+  I +   +F L+  +  R          + R +  V     V G + +  +I   L       + +  + ++GMGGLGKTTL
Sbjct:    1 MAEAFIQVLLDNLTSFLKGELVLLFGFQDEFQRLSSMFSTIQAVLEDAQ--EKQLNNKPLENWLQKLNAATYEVDDILDEYKTKATRFSQSEYG---RYHPKVIPFRHKVGKRMDQVMKKLKAIAEERKNFHLHEKIVER--------QAVRRETGSVLTEPQVYGRDKEKDEIVKILINNVSDAQHLSVLPILGMGGLGKTTL 191          

HSP 2 Score: 25.0238 bits (53), Expect = 1.374e-11
Identity = 10/22 (45.45%), Postives = 14/22 (63.64%), Query Frame = 3
Query:  660 GWIGKDHIAQKVFNDREIENWF 725
            G +GK  +AQ VFND+ +   F
Sbjct:  184 GGLGKTTLAQMVFNDQRVTEHF 205          
BLAST of FC931019 vs. ExPASy Swiss-Prot
Match: DRL8_ARATH (Putative disease resistance protein At1g58400 OS=Arabidopsis thaliana GN=At1g58400 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11
Identity = 56/209 (26.79%), Postives = 107/209 (51.20%), Query Frame = 1
Query:   85 MADAVVQIFLERLLITLTEQTGYVNEFRDQFERLQSELQFMQSFLADADRLKRKRNSQTLRTSMAELRELIYEAEDILADCHLQSRDEDQLSNGWLTFLYPPNI--SFRYQTGKRLREINDKITYIKQNVASFLNVPLFT----RTDTMDARNDQMSRWSCPVYDHTLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTLLRR 693
            M +A+V   +E+L   LT++        D+   L+S L  ++SFL DA+   +K  SQ +R  + E++E++Y+ E+++    L  ++  +  +G +  +         R++    +  I+ +I+ + Q++ SF    + +     +  +  R  +M +     Y+    VGLE + +K+  +L E E+ I  + V GMGGLGKTTL R+
Sbjct:    1 MVEAIVSFGVEKLWDRLTQEYEQFQGVEDRIAELKSNLNLLKSFLKDAE--AKKNTSQMVRHCVEEIKEIVYDTENMIETFIL--KEAARKRSGIIRRITKLTCIKVHRWEFASDIGGISKRISKVIQDMHSFGVQQMISDGSQSSHLLQEREREMRQTFSRGYESDF-VGLEVNVKKLVGYLVE-EDDIQIVSVTGMGGLGKTTLARQ 203          
BLAST of FC931019 vs. ExPASy Swiss-Prot
Match: DRL12_ARATH (Probable disease resistance protein At1g59620 OS=Arabidopsis thaliana GN=At1g59620 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.084e-11
Identity = 54/203 (26.60%), Postives = 97/203 (47.78%), Query Frame = 1
Query:   85 MADAVVQIFLERLLITLTEQTGYVNEFRDQFERLQSELQFMQSFLADADRLKRKRNSQTLRTSMAELRELIYEAEDILADCHLQSRDEDQLSNGWLTFLYPPNISFRYQTGKRLREINDKITYIKQNVASFLNVPLFTRTDTMDARNDQMSRWSCPVYDHTLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTLLRR 693
            MA+ ++   +E+L   L  ++      + QF  L+S+L  ++ FL DAD   +K  S  +  ++ E++E++Y+ EDI+                  TFL    +       KR++E    +   ++ +A  +   L  R    D RN    R +    + +++VGLE + +K+   L E E+    + + GMGG+GKTTL R+
Sbjct:    1 MAETLLSFGVEKLWDLLVRESDRFQGVKKQFNELRSDLNKLRCFLEDADA--KKHQSAMVSNTVKEVKEIVYDTEDIIE-----------------TFLRKKQLGRTRGMKKRIKEFACVLPD-RRKIAIDME-GLSKRIAKKDKRN---MRQTFSNNNESVLVGLEENVKKLVGHLVEVEDSSQVVSITGMGGIGKTTLARQ 179          
The following BLAST results are available for this feature:
BLAST of FC931019 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
R13L4_ARATH1.127e-5151.47Disease resistance RPP13-like protein 4 OS=Arabido... [more]
RGA3_SOLBU3.374e-1427.59Putative disease resistance protein RGA3 OS=Solanu... [more]
DRL4_ARATH3.892e-1430.29Putative disease resistance protein At1g50180 OS=A... [more]
RGA4_SOLBU4.611e-1327.59Putative disease resistance protein RGA4 OS=Solanu... [more]
RPM1_ARATH1.060e-1125.84Disease resistance protein RPM1 OS=Arabidopsis tha... [more]
RGA2_SOLBU1.374e-1126.96Disease resistance protein RGA2 OS=Solanum bulboca... [more]
DRL8_ARATH2.361e-1126.79Putative disease resistance protein At1g58400 OS=A... [more]
DRL12_ARATH3.084e-1126.60Probable disease resistance protein At1g59620 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionC34100E08EF PostHarvP1 Citrus clementina cDNA clone C34100E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931019 ID=FC931019; Name=FC931019; organism=Citrus clementina; type=EST; length=727bp
GGAATTACTGAGTTCTGAGAGATTACTAAAGGCTTCCAAGAATTTGATTC
TTTTCCCTTGCTTCATATTTGTGGGGGAGAAAGTATGGCGGATGCAGTGG
TGCAGATATTCTTGGAAAGGCTACTTATCACTCTTACGGAACAGACTGGC
TATGTGAATGAATTCAGGGACCAGTTTGAGAGGTTACAGAGTGAGCTTCA
GTTCATGCAGAGCTTCCTGGCAGATGCAGACAGGCTTAAGAGGAAGAGAA
ATTCCCAAACTCTACGCACGTCCATGGCTGAGCTGCGGGAGCTGATTTAT
GAAGCTGAAGACATTCTGGCAGACTGTCATCTCCAATCAAGGGATGAGGA
TCAACTTTCCAATGGTTGGTTGACTTTTCTATATCCTCCAAATATTTCAT
TTCGGTATCAAACTGGAAAGCGCCTCAGAGAAATCAATGACAAAATCACC
TACATTAAACAAAACGTAGCGTCTTTTCTTAATGTCCCACTTTTCACCCG
GACAGACACAATGGATGCACGCAATGACCAAATGAGCAGATGGAGCTGCC
CTGTATATGACCATACCTTAGTGGTTGGATTGGAAGGCGACACAAGGAAG
ATTAAAGATTGGCTATTTGAAGCAGAGGAAGGGATACTAGCAATTGGCGT
TGTTGGTATGGGTGGATTGGGAAAGACCACATTGCTCAGAAGGTATTCAA
TGACAGAGAAATAGAGAATTGGTTTGA
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