FC931024

Overview
NameFC931024
Unique NameFC931024
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length745
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931024_ssr50 microsatellite FC931024_ssr50:50..61. BLAST: Citrus ESTs to Prunus persica proteins V1
FC931024_ssr98 microsatellite FC931024_ssr98:98..109. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC931024 vs. ExPASy Swiss-Prot
Match: DJC21_HUMAN (DnaJ homolog subfamily C member 21 OS=Homo sapiens GN=DNAJC21 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.714e-26
Identity = 61/155 (39.35%), Postives = 93/155 (60.00%), Query Frame = 1
Query:  205 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNKIYLVEVSYVKKLGLGLDVLREAPIMGNLESPYGQV 669
            +C YE LG+R++ + +E++ AY+KLAL+ HPDK + +    AEA  QF+ +  AY+VLSDP+ERAWYD+HR  +L    +       + +L  YF+ T +SGY D  KGFY VY ++F  I   E+  V +     + + + P  G+ +S Y  V
Sbjct:    2 KCHYEALGVRRDASEEELKKAYRKLALKWHPDKNLDNA---AEAAEQFKLIQAAYDVLSDPQERAWYDNHREALLKGGFDGEYQDDSL-DLLRYFTVTCYSGYGDDEKGFYTVYRNVFEMIAKEELESVLE-----EEVDDFPTFGDSQSDYDTV 147          

HSP 2 Score: 27.7202 bits (60), Expect = 2.714e-26
Identity = 9/18 (50.00%), Postives = 11/18 (61.11%), Query Frame = 3
Query:  684 YWXGFSTVMDFCWVDEYD 737
            YW  F T  +F W +EYD
Sbjct:  154 YWQSFCTQKNFAWKEEYD 171          
BLAST of FC931024 vs. ExPASy Swiss-Prot
Match: DJC21_DANRE (DnaJ homolog subfamily C member 21 OS=Danio rerio GN=dnajc21 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.596e-26
Identity = 62/159 (38.99%), Postives = 92/159 (57.86%), Query Frame = 1
Query:  205 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNKIYLVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFY 681
            +C YEVLG++++ + D+++ AY+KLAL+ HPDK + +    AE   QF+ +  AY+VLSDP+ERAWYD+HR  +L   ++       + +L  +F+ T +SGY D  KGFY VY ++F  I   E  + K      D   E P  G  ES Y  V   +
Sbjct:    2 KCHYEVLGVKRDASDDDLKKAYRKLALKWHPDKNLDNAEDAAE---QFKLIQAAYDVLSDPQERAWYDNHREALLKGGVSGEYQDDSI-DLVQFFTVTCYSGYGDDEKGFYAVYRNVFESIVKEEKEHSKD---EEDEEDEFPSFGESESDYDTVVHLF 153          

HSP 2 Score: 27.335 bits (59), Expect = 4.596e-26
Identity = 9/18 (50.00%), Postives = 11/18 (61.11%), Query Frame = 3
Query:  684 YWXGFSTVMDFCWVDEYD 737
            YW  F T  +F W +EYD
Sbjct:  156 YWQSFCTRKNFAWKEEYD 173          
BLAST of FC931024 vs. ExPASy Swiss-Prot
Match: JJJ1_YEAST (J protein JJJ1 OS=Saccharomyces cerevisiae GN=JJJ1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.142e-17
Identity = 51/145 (35.17%), Postives = 78/145 (53.79%), Query Frame = 1
Query:  202 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFS-----------DLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNKIYLVEVSYVKKLG 603
            K C YE+LG+    +  E++ AY+K ALQ HPDK   +     EAT +F  +  AYEVLSDP+ERAWYDSH+ QIL             ++++         L  +F++  ++   +S  G Y++   +F K+   E+   K+LG
Sbjct:    2 KTCYYELLGVETHASDLELKKAYRKKALQYHPDKNPDN---VEEATQKFAVIRAAYEVLSDPQERAWYDSHKEQILNDTPPSTDDYYDYEVDATVTGVTTDELLLFFNSALYTKIDNSAAGIYQIAGKIFAKLAKDEILSGKRLG 143          
BLAST of FC931024 vs. ExPASy Swiss-Prot
Match: DNAJ_GEOSL (Chaperone protein dnaJ OS=Geobacter sulfurreducens GN=dnaJ PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.548e-13
Identity = 47/127 (37.01%), Postives = 69/127 (54.33%), Query Frame = 1
Query:  190 MASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNKIY 570
            MA++KR  YEVLG+ K  +  EI+ A++KLA+Q HPDK         EA  +F+E+  AYEVLSDP++RA YD    Q   + + +             FS   F G+  +G  F  ++ D+F  I+
Sbjct:    1 MAADKRDYYEVLGVHKNASDTEIKKAFRKLAIQYHPDK----NPDDKEAEEKFKEITEAYEVLSDPQKRAQYD----QFGHAGVGAGG-----------FSGGGFGGFG-AGTPFGDIFGDIFGDIF 107          
BLAST of FC931024 vs. ExPASy Swiss-Prot
Match: DNAJ_RALME (Chaperone protein dnaJ OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.449e-13
Identity = 44/123 (35.77%), Postives = 65/123 (52.85%), Query Frame = 1
Query:  202 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNKIY 570
            KR  YEVLG+ K  + DEI+ AY+KLA++ HPD+         EA  +F+E+  AYE+LSDP+++A YD +             + G  PN+   F    F      G GF + + D+F  I+
Sbjct:    3 KRDYYEVLGVGKNASDDEIKKAYRKLAMKHHPDR----NPDNKEAEEKFKEVKEAYEMLSDPEKKAAYDQY------------GHAGVDPNMAGGFGGGGF-----GGGGFAEAFGDIFGDIF 104          
BLAST of FC931024 vs. ExPASy Swiss-Prot
Match: DNJA1_DICDI (DnaJ homolog subfamily A member 1 homolog OS=Dictyostelium discoideum GN=dnaja1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.504e-13
Identity = 44/116 (37.93%), Postives = 69/116 (59.48%), Query Frame = 1
Query:  190 MASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYF--SNTAFSGYSDSGKG 531
            M  EK   YE LG++ +CT DE++ AY+K+A++ HPDK    G  +  A A+F+++  AYEVLSDP++R  YDS+ S+ +     S  +     +L+S+F  +     G+S  G G
Sbjct:    1 MVKEKE-YYERLGVKPDCTEDELKKAYRKMAVKYHPDK--NQGPGKDAAEAKFKDISEAYEVLSDPEKRKMYDSYGSEGM---KESGFHASSAEDLFSHFFGAGGGGGGFSFGGGG 110          
BLAST of FC931024 vs. ExPASy Swiss-Prot
Match: DNAJ_PORGI (Chaperone protein dnaJ OS=Porphyromonas gingivalis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.883e-13
Identity = 47/123 (38.21%), Postives = 67/123 (54.47%), Query Frame = 1
Query:  196 SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFSDLNSASNCG------PVPNLYSYFSNT-----AFSGYSDSGKG 531
            +EKR  YEVLG+ K  T DE++ AY+K A+Q HPDK         EA   F+E+  AY+VLSDP++R+ YD    Q   + L  A+  G       + +++S F +       F G+SD G G
Sbjct:    2 AEKRDYYEVLGVSKNATDDELKKAYRKKAIQYHPDK----NPGDKEAEEHFKEVAEAYDVLSDPQKRSQYD----QFGHAGLGGAAGGGFSGGGMSMEDIFSRFGDLFGGFGGFGGFSDMGGG 116          
BLAST of FC931024 vs. ExPASy Swiss-Prot
Match: XDJ1_YEAST (DnaJ protein homolog XDJ1 OS=Saccharomyces cerevisiae GN=XDJ1 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.003e-12
Identity = 44/121 (36.36%), Postives = 67/121 (55.37%), Query Frame = 1
Query:  211 LYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNL----YSYFSNTAFSGYSDSGKGF---YKVYSD 552
            LY+VLG+ ++ T  EI++AY+KLAL+ HPDK V    S+     +F+E+  AYE+LSDP++++ YD      L+ D N A++ G         +  F N  F+  S  G  F   Y  Y +
Sbjct:   10 LYDVLGVTRDATVQEIKTAYRKLALKHHPDKYVDQD-SKEVNEIKFKEITAAYEILSDPEKKSHYD------LYGDDNGAASSGGANGFGDEDFMNFFNNFFNNGSHDGNNFPGEYDAYEE 123          
BLAST of FC931024 vs. ExPASy Swiss-Prot
Match: DNAJ_MYCPE (Chaperone protein dnaJ OS=Mycoplasma penetrans GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.003e-12
Identity = 44/125 (35.20%), Postives = 65/125 (52.00%), Query Frame = 1
Query:  196 SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSG----YSDSGKGFYKVYSDLF 558
            S KR  YEVLG+ K+ T D+I+SA++K A+Q HPD+       + +A  +F+E+  AYEVLSDP +RA YD    + +       +   P      +F      G     S  G GF  ++S+ F
Sbjct:    2 SSKRDYYEVLGVSKDATDDQIKSAFRKKAMQYHPDR-----NKEPDAEEKFKEVNQAYEVLSDPDKRANYDRFGHEGVDGQFGGGAGFDPFDIFNQFFGGGRGGGAHFEQSFGGSGFEDIFSNFF 121          
BLAST of FC931024 vs. ExPASy Swiss-Prot
Match: DNAJ_RALPJ (Chaperone protein dnaJ OS=Ralstonia pickettii (strain 12J) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.236e-12
Identity = 52/162 (32.10%), Postives = 79/162 (48.77%), Query Frame = 1
Query:  202 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNKIYLVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYIT 687
            KR  YEVLG+ K  + DEI+ AY+KLA++ HPD+   S     EA  +F+E   AYE+LSD +++A YD +             + G  PN+   F     +G +  G GF + + D+F  I+        + G G  + R A +  ++E    Q    Y T
Sbjct:    3 KRDYYEVLGVGKNASDDEIKKAYRKLAMKYHPDRNPDS----KEAEDKFKEAKEAYEMLSDAEKKAAYDQY------------GHAGVDPNMAGGFG----AGGAGFGGGFAEAFGDIFGDIFGQAQGQGGRRGGGPQMYRGADLRYSMEITLEQAAHGYDT 144          
The following BLAST results are available for this feature:
BLAST of FC931024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
DJC21_HUMAN2.714e-2639.35DnaJ homolog subfamily C member 21 OS=Homo sapiens... [more]
DJC21_DANRE4.596e-2638.99DnaJ homolog subfamily C member 21 OS=Danio rerio ... [more]
JJJ1_YEAST5.142e-1735.17J protein JJJ1 OS=Saccharomyces cerevisiae GN=JJJ1... [more]
DNAJ_GEOSL1.548e-1337.01Chaperone protein dnaJ OS=Geobacter sulfurreducens... [more]
DNAJ_RALME3.449e-1335.77Chaperone protein dnaJ OS=Ralstonia metallidurans ... [more]
DNJA1_DICDI4.504e-1337.93DnaJ homolog subfamily A member 1 homolog OS=Dicty... [more]
DNAJ_PORGI5.883e-1338.21Chaperone protein dnaJ OS=Porphyromonas gingivalis... [more]
XDJ1_YEAST1.003e-1236.36DnaJ protein homolog XDJ1 OS=Saccharomyces cerevis... [more]
DNAJ_MYCPE1.003e-1235.20Chaperone protein dnaJ OS=Mycoplasma penetrans GN=... [more]
DNAJ_RALPJ2.236e-1232.10Chaperone protein dnaJ OS=Ralstonia pickettii (str... [more]

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Properties
Property NameValue
Genbank descriptionC34100F01EF PostHarvP1 Citrus clementina cDNA clone C34100F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931024 ID=FC931024; Name=FC931024; organism=Citrus clementina; type=EST; length=745bp
AAGGGAAGAGAAACGGTTACACGTTCTTAAAGCGACTATCCAACCCATGC
AACCAACCAACCCTTTCTTCCTGAACCCTAATTACAACAACAAGCAATTA
TTTATTTATATTATTTTAAAGAAGAAAGCCAGCTAAACGAAGCTTCGGGA
GCTGGACCTCGGAGACGGAAAACATCGACGAATTGATCAATGGCATCGGA
AAAGCGATGCCTCTACGAGGTGCTGGGCCTGCGAAAGGAATGCACGACCG
ACGAAATTCGCTCAGCTTACAAGAAGCTTGCGCTGCAGCGCCACCCAGAC
AAGCTGGTCCAATCCGGCTTGAGCCAAGCCGAGGCAACGGCTCAGTTCCA
AGAGCTCGTCCACGCCTATGAGGTCCTCTCCGACCCGAAAGAACGCGCCT
GGTACGACTCTCACCGCTCCCAAATCCTCTTCTCCGATCTTAACTCCGCC
TCCAACTGCGGCCCCGTCCCCAATCTCTACTCCTATTTCTCTAACACCGC
CTTTTCTGGGTATTCGGATTCGGGTAAGGGGTTTTATAAAGTGTATTCGG
ATTTGTTTAATAAGATTTATTTGGTTGAGGTTAGTTATGTGAAGAAATTA
GGGTTAGGATTGGATGTGTTGAGGGAGGCCCCCATAATGGGGAATTTGGA
GTCTCCCTATGGACAGGTTACGGCGTTTTATATTACTGGNTAGGGTTTAG
TACGGTGATGGATTTTTGTTGGGTGGATGAATATGATGTGATGGC
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