FC931031

Overview
NameFC931031
Unique NameFC931031
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig131 contig Ccv1_Contig131:62..762. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931031 vs. ExPASy Swiss-Prot
Match: RER1A_ARATH (Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.370e-69
Identity = 124/174 (71.26%), Postives = 138/174 (79.31%), Query Frame = 3
Query:  183 MEGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEIE-VADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFN 701
            M+  GGD+ S A+PV Q  H+AWR+YQ+YLDKTTPHA YRWIGTLV+  IYCLRV+Y+Q                      PLVDPE   V+DGP LPT+GSDEFKPFIRRLPEFKFWYSMTKAFCIAF+MTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKY+YIPF+
Sbjct:    1 MDESGGDSGSVATPVQQRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQGFYIIAYGLGIYLLNLLIGFLSPLVDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKFWYSMTKAFCIAFLMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFS 174          
BLAST of FC931031 vs. ExPASy Swiss-Prot
Match: RER1B_ARATH (Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=2 SV=2)

HSP 1 Score: 259.225 bits (661), Expect = 1.515e-68
Identity = 120/173 (69.36%), Postives = 136/173 (78.61%), Query Frame = 3
Query:  183 MEGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEIEVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFN 701
            MEG GGD+ S A+PV +  H+AWR+YQYYLDKTTPH+  RWIGTLV   IYCLRV+ +                       PLVDPE+EV+DG  LPT+GSDEFKPFIRRLPEFKFWYSMTKAFCIAF+MTFFSVFDVPVFWPILLCYW+VLFVLTMRRQIAHMIK++YIPF+
Sbjct:    1 MEGSGGDSGSMATPVQKKVHEAWRVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHGFYIISYGLGIYLLNLLIGFLSPLVDPELEVSDGATLPTRGSDEFKPFIRRLPEFKFWYSMTKAFCIAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFS 173          
BLAST of FC931031 vs. ExPASy Swiss-Prot
Match: RER1C_ARATH (Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 8.941e-45
Identity = 84/167 (50.30%), Postives = 110/167 (65.87%), Query Frame = 3
Query:  201 DTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEIEVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFN 701
            D++S A  V++  H   +  Q+ LDKT PH +YRWI  L ++ IY +RV++V+                      P  DPE  +  G  LPT+ SDE++PF+RRLPEFKFW S+ +AF I F+MTFF VFDVPVFWPILL YW++LF LTMR+QI HMIKYRY+PF+
Sbjct:   29 DSSSPADAVNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVEGFYIITYAIGIYLLNLIIAFLSPQEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKFWLSIIRAFIIGFMMTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFS 195          
BLAST of FC931031 vs. ExPASy Swiss-Prot
Match: RER1_BOVIN (Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.929e-39
Identity = 80/173 (46.24%), Postives = 107/173 (61.85%), Query Frame = 3
Query:  186 EGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 698
            + +G       S V ++     ++YQ +LDK+TPH   RW+ TL +  IY +RV+ +Q                      P VDP +  +  DGP LPTK ++EF+PFIRRLPEFKFW++ TK   +A V TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:    5 DSVGDSVHGKPSVVYRFFTRLGQIYQSWLDKSTPHTAVRWVVTLGLSFIYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVCTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
BLAST of FC931031 vs. ExPASy Swiss-Prot
Match: RER1_RAT (Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.250e-38
Identity = 77/173 (44.51%), Postives = 107/173 (61.85%), Query Frame = 3
Query:  186 EGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 698
            + +G       S V ++     ++YQ +LDK+TP+   RW+ TL +  +Y +RV+ +Q                      P VDP +  +  DGP LPTK ++EF+PFIRRLPEFKFW++ TK   +A + TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:    5 DSVGDSVHGKPSVVYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMICTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
BLAST of FC931031 vs. ExPASy Swiss-Prot
Match: RER1_MOUSE (Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.250e-38
Identity = 77/173 (44.51%), Postives = 107/173 (61.85%), Query Frame = 3
Query:  186 EGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 698
            + +G       S V ++     ++YQ +LDK+TP+   RW+ TL +  +Y +RV+ +Q                      P VDP +  +  DGP LPTK ++EF+PFIRRLPEFKFW++ TK   +A + TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:    5 DSVGDSVHGKPSVVYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMICTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
BLAST of FC931031 vs. ExPASy Swiss-Prot
Match: RER1_PONAB (Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.633e-38
Identity = 78/173 (45.09%), Postives = 107/173 (61.85%), Query Frame = 3
Query:  186 EGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 698
            + +G       S V ++     ++YQ +LDK+TP+   RW+ TL +  +Y +RV+ +Q                      P VDP +  +  DGP LPTK ++EF+PFIRRLPEFKFW++ TK   +A V TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:    5 DSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
BLAST of FC931031 vs. ExPASy Swiss-Prot
Match: RER1_HUMAN (Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.633e-38
Identity = 78/173 (45.09%), Postives = 107/173 (61.85%), Query Frame = 3
Query:  186 EGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 698
            + +G       S V ++     ++YQ +LDK+TP+   RW+ TL +  +Y +RV+ +Q                      P VDP +  +  DGP LPTK ++EF+PFIRRLPEFKFW++ TK   +A V TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:    5 DSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
BLAST of FC931031 vs. ExPASy Swiss-Prot
Match: RER1_CHICK (Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.133e-38
Identity = 80/173 (46.24%), Postives = 106/173 (61.27%), Query Frame = 3
Query:  186 EGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 698
            + IG       S V ++     ++YQ +LDK+TP+   RWI TL +  IY +RV+ +Q                      P VDP +  +  DGP LPT+ ++EF+PFIRRLPEFKFW+S TK   +A   TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:    5 DSIGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWIVTLGLSFIYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTRQNEEFRPFIRRLPEFKFWHSATKGILVAMACTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
BLAST of FC931031 vs. ExPASy Swiss-Prot
Match: RER1_CAEEL (Protein RER1 homolog OS=Caenorhabditis elegans GN=rer-1 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.133e-38
Identity = 76/160 (47.50%), Postives = 98/160 (61.25%), Query Frame = 3
Query:  228 SQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEIEVAD---GPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 698
            S++ H     YQYYLD+ TPH  +RW+  L+ L  +  R+  +Q                      P +DP +E  D   GP+LP+K +DEF+PF+RRLPEFKFW+S  KA  IA   TFF  FDVPVFWPIL+ Y+ +L  LT++RQI HMIKYRYIPF
Sbjct:   13 SRFFHSLEVKYQYYLDRLTPHTAFRWVIALISLVFFASRIILLQGFYIVAYAVGIYYLNLFLLFLTPSIDPALEFEDEDDGPVLPSKTNDEFRPFMRRLPEFKFWHSFMKATLIAITCTFFEFFDVPVFWPILVMYFFILTFLTLKRQIMHMIKYRYIPF 172          
The following BLAST results are available for this feature:
BLAST of FC931031 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RER1A_ARATH1.370e-6971.26Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=... [more]
RER1B_ARATH1.515e-6869.36Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=... [more]
RER1C_ARATH8.941e-4550.30Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=... [more]
RER1_BOVIN1.929e-3946.24Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2[more]
RER1_RAT1.250e-3844.51Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=2 SV=... [more]
RER1_MOUSE1.250e-3844.51Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1[more]
RER1_PONAB1.633e-3845.09Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1[more]
RER1_HUMAN1.633e-3845.09Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1[more]
RER1_CHICK2.133e-3846.24Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1[more]
RER1_CAEEL2.133e-3847.50Protein RER1 homolog OS=Caenorhabditis elegans GN=... [more]

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Properties
Property NameValue
Genbank descriptionC34100F09EF PostHarvP1 Citrus clementina cDNA clone C34100F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931031 ID=FC931031; Name=FC931031; organism=Citrus clementina; type=EST; length=701bp
GGAAAAAAGACTCGTTTCAAGATCTGTGGTTGAAGTTCCCTTTTTATCTT
CGAAGTAAATTAGCTGTCAAAGAAAGAATCAAAAGAAAAACCCTCGCTTC
TGTTTGGTGGGCGAGAAAGCTTGGGAAAATGAAAAGATAGAATCTTGCAT
CTTTCTTTTAGGACTTTTCATACTTAGATTGAATGGAAGGAATTGGAGGC
GACACTGCCTCGGCGGCATCCCCTGTATCACAATGGGGACATGATGCTTG
GAGGCTATATCAGTATTACCTGGACAAGACTACTCCACATGCAGTTTATA
GGTGGATTGGAACCCTTGTAATTTTGGCAATCTACTGTTTGCGGGTTTTT
TATGTGCAAGGATTCTACATCATATCCTATGGTCTTGGGATCTATCTCCT
GAATTTGCTTATTGGGTTTTTGTCGCCTCTGGTTGATCCTGAAATCGAAG
TCGCTGATGGGCCTTTGTTGCCGACAAAGGGTTCTGATGAATTCAAGCCT
TTTATTCGCCGACTCCCAGAGTTTAAATTTTGGTACTCCATGACCAAGGC
TTTCTGCATAGCTTTTGTAATGACATTCTTTTCTGTGTTTGATGTTCCTG
TGTTTTGGCCCATATTACTTTGTTACTGGATTGTTCTGTTTGTTCTTACA
ATGAGACGCCAAATCGCACACATGATCAAATACAGATATATCCCGTTCAA
C
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