FC931048

Overview
NameFC931048
Unique NameFC931048
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931048_ssr29 microsatellite FC931048_ssr29:29..38. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig165 contig Ccv1_Contig165:45..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931048 vs. ExPASy Swiss-Prot
Match: UMPK_ARATH (Uridylate kinase OS=Arabidopsis thaliana GN=PYR6 PE=1 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 9.440e-77
Identity = 138/157 (87.90%), Postives = 150/157 (95.54%), Query Frame = 3
Query:  180 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKFGRL 650
            LGGPGSGKGTQCA IVEH+GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKA++E+GNDKFLIDGFPRNEENRAAFE VT+IEP+FVLFFDC EEEME+R+L RNQGREDDN+ETIRKRFKVFLESSLPV+ YYEAKGK  ++
Sbjct:   20 LGGPGSGKGTQCAYIVEHYGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAIQENGNDKFLIDGFPRNEENRAAFEKVTEIEPKFVLFFDCPEEEMEKRLLGRNQGREDDNIETIRKRFKVFLESSLPVIHYYEAKGKVRKI 176          

HSP 2 Score: 22.3274 bits (46), Expect = 9.440e-77
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 2
Query:  632 G*VRKIDAAKPVAEV 676
            G VRKI+AAKP+  V
Sbjct:  171 GKVRKINAAKPIEAV 185          
BLAST of FC931048 vs. ExPASy Swiss-Prot
Match: KAD_PRUAR (Adenylate kinase OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 9.451e-55
Identity = 101/157 (64.33%), Postives = 126/157 (80.25%), Query Frame = 3
Query:  180 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKFGRL 650
            LGGPGSGKGTQCA IVE FG+TH+SAGDLLR EI SGS  G++I + I+EGKIVPS+VT++L+QK ME S N KFLIDGFPR+EENR AFE     EP+ VLFFDC E+EM +R+LNRNQGR DDN++TI+KR ++F E + PV+ YY  +GK  ++
Sbjct:   53 LGGPGSGKGTQCAKIVEAFGFTHVSAGDLLRREIASGSAYGSVILSTIREGKIVPSQVTVELIQKEMESSDNYKFLIDGFPRSEENRKAFEQTIGAEPDVVLFFDCPEQEMVKRVLNRNQGRVDDNIDTIKKRLEIFDELNWPVINYYSQRGKLHKI 209          
BLAST of FC931048 vs. ExPASy Swiss-Prot
Match: KCY_DICDI (Cytidylate kinase OS=Dictyostelium discoideum GN=pyrK PE=1 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 1.849e-42
Identity = 87/152 (57.24%), Postives = 112/152 (73.68%), Query Frame = 3
Query:  180 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK--IEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYY 623
            LGGPGSGKGTQCANIV  FG+ HLSAGDLLR E +SGS++G MI  MIK G+IVPS VT+KLL+ A++ +    FL+DGFPRNEEN  ++E   K  ++ +FVLFFDC EE M +R+L R +  GR DDN+E+I+KRF  F   +  V+ +Y
Sbjct:   13 LGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHY 164          
BLAST of FC931048 vs. ExPASy Swiss-Prot
Match: UMPK_YEAST (Uridylate kinase OS=Saccharomyces cerevisiae GN=URA6 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.855e-40
Identity = 83/163 (50.92%), Postives = 117/163 (71.78%), Query Frame = 3
Query:  180 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI-KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE---SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKFGRL 650
            LGGPG+GKGTQC  +V+ + + HLSAGDLLRAE  ++GS+ G +I+N IKEG+IVP E+T+ LL+ A+ +   +   KFLIDGFPR  +   +FE    +E +F+LFFDC E+ M  R+L R +  GR DDN+E+I+KRF  F E+S+PV++Y+E K K  R+
Sbjct:   22 LGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFER-DIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRV 183          
BLAST of FC931048 vs. ExPASy Swiss-Prot
Match: KCY_CHICK (UMP-CMP kinase OS=Gallus gallus GN=CMPK1 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.575e-40
Identity = 89/167 (53.29%), Postives = 113/167 (67.66%), Query Frame = 3
Query:  180 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK-SGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-----SGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKFGRL 650
            LGGPG+GKGTQCA IVE +GYTHLSAGDLLR E K  GS+ G +I+N IKEG+IVP E+TI LL++AM++     S  +KFLIDGFPRNE+N   +      K +  FVLFFDC  E    R L R  + GR DDN E++ KR   +L+S+ P++  YE  GK  R+
Sbjct:    9 LGGPGAGKGTQCARIVEKYGYTHLSAGDLLRDERKRPGSQYGELIENYIKEGEIVPVEITISLLKRAMDQTMAANSQKNKFLIDGFPRNEDNLQGWNKTMDGKADVSFVLFFDCDNEICIGRCLERGKSSGRSDDNRESLEKRIHTYLQSTRPIIDLYERMGKVRRV 175          
BLAST of FC931048 vs. ExPASy Swiss-Prot
Match: KCY_XENLA (UMP-CMP kinase OS=Xenopus laevis GN=cmpk1 PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 1.513e-39
Identity = 85/163 (52.15%), Postives = 111/163 (68.10%), Query Frame = 3
Query:  180 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAME-----ESGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGK 638
            LGGPG+GKGTQC  IV+ +GYTHLSAGDLLR E K   S+ G +I++ I++GKIVP E+TI LLQ+AME     ++   KFLIDGFPRNE+N   +E     K +  FVLFFDC  E    R L R  + GR DDN E++ KR + +L+S+ P++  YE +GK
Sbjct:    9 LGGPGAGKGTQCERIVQKYGYTHLSAGDLLRDERKKPDSQYGELIESYIRDGKIVPVEITISLLQRAMERTMAFDANKHKFLIDGFPRNEDNLQGWERTMNGKADVSFVLFFDCDNETCIERCLERGKSSGRSDDNRESLEKRIQTYLQSTRPIIDLYEKRGK 171          

HSP 2 Score: 21.9422 bits (45), Expect = 1.513e-39
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 2
Query:  632 G*VRKIDAAKPVAEV 676
            G VRK+DA+K V EV
Sbjct:  170 GKVRKVDASKSVDEV 184          
BLAST of FC931048 vs. ExPASy Swiss-Prot
Match: KCY_DANRE (UMP-CMP kinase OS=Danio rerio GN=cmpk1 PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 2.499e-39
Identity = 88/167 (52.69%), Postives = 117/167 (70.06%), Query Frame = 3
Query:  180 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-----GNDKFLIDGFPRNEENRAAF--EAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKFGRL 650
            LGGPG+GKGTQCA IVE++ YTHLSAGDLLR E  ++ SE G +I + IKEGKIVP ++TI LL+KAMEE+        +FLIDGFPRN++N   +  E   K + +FVLFFDCS E    R L R  + GR DDN E++ KR + +L+S+ P+++ YE +GK  R+
Sbjct:    9 LGGPGAGKGTQCARIVENYSYTHLSAGDLLREERSRTDSEFGQLIDSYIKEGKIVPVQITINLLRKAMEETMKADEKKFRFLIDGFPRNQDNLQGWNTEMDGKADVKFVLFFDCSNEVCIDRCLERGKSSGRTDDNRESLEKRIQTYLQSTRPIIELYEKQGKVQRI 175          
BLAST of FC931048 vs. ExPASy Swiss-Prot
Match: KCY_XENTR (UMP-CMP kinase OS=Xenopus tropicalis GN=cmpk1 PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.240e-38
Identity = 86/163 (52.76%), Postives = 112/163 (68.71%), Query Frame = 3
Query:  180 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES----GN-DKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGK 638
            LGGPG+GKGTQC  IV+ +GYTHLSAGDLLR E K   S+ G +I++ I++G+IVP E+TI LLQ+AME++    GN  KFLIDGFPRNE+N   +E     K +  FVLFFDC  E    R L R  + GR DDN E++ KR + +L+S+ P++  YE  GK
Sbjct:    9 LGGPGAGKGTQCERIVQKYGYTHLSAGDLLRDERKKPDSQYGELIESYIRDGRIVPVEITISLLQRAMEQTMALDGNKHKFLIDGFPRNEDNLQGWERTMNGKADVSFVLFFDCDNETCIERCLERGKSSGRSDDNRESLEKRIQTYLQSTRPIIDLYEKTGK 171          
BLAST of FC931048 vs. ExPASy Swiss-Prot
Match: KCY_MOUSE (UMP-CMP kinase OS=Mus musculus GN=Cmpk1 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.712e-38
Identity = 84/167 (50.30%), Postives = 113/167 (67.66%), Query Frame = 3
Query:  180 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-----SGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKFGRL 650
            LGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IKEGKIVP E+TI LL++ M++     +  +KFLIDGFPRN++N   +      K +  FVLFFDC+ E    R L R  + GR DDN E++ KR + +LES+ P++  YE  GK  ++
Sbjct:    9 LGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLESTKPIIDLYEEMGKVKKI 175          
BLAST of FC931048 vs. ExPASy Swiss-Prot
Match: KCY_BOVIN (UMP-CMP kinase OS=Bos taurus GN=CMPK1 PE=2 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 7.999e-38
Identity = 82/167 (49.10%), Postives = 113/167 (67.66%), Query Frame = 3
Query:  180 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-----SGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKFGRL 650
            LGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IK+GKIVP E+TI LL++ M++     +  +KFLIDGFPRN++N   +      K +  FVLFFDC+ E    R L R  + GR DDN E++ KR + +L+S+ P++  YE  GK  ++
Sbjct:    9 LGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEITISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVRKI 175          

HSP 2 Score: 22.3274 bits (46), Expect = 7.999e-38
Identity = 11/15 (73.33%), Postives = 12/15 (80.00%), Query Frame = 2
Query:  632 G*VRKIDAAKPVAEV 676
            G VRKIDA+K V EV
Sbjct:  170 GKVRKIDASKSVDEV 184          
The following BLAST results are available for this feature:
BLAST of FC931048 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
UMPK_ARATH9.440e-7787.90Uridylate kinase OS=Arabidopsis thaliana GN=PYR6 P... [more]
KAD_PRUAR9.451e-5564.33Adenylate kinase OS=Prunus armeniaca PE=2 SV=1[more]
KCY_DICDI1.849e-4257.24Cytidylate kinase OS=Dictyostelium discoideum GN=p... [more]
UMPK_YEAST3.855e-4050.92Uridylate kinase OS=Saccharomyces cerevisiae GN=UR... [more]
KCY_CHICK6.575e-4053.29UMP-CMP kinase OS=Gallus gallus GN=CMPK1 PE=2 SV=1[more]
KCY_XENLA1.513e-3952.15UMP-CMP kinase OS=Xenopus laevis GN=cmpk1 PE=2 SV=... [more]
KCY_DANRE2.499e-3952.69UMP-CMP kinase OS=Danio rerio GN=cmpk1 PE=2 SV=2[more]
KCY_XENTR1.240e-3852.76UMP-CMP kinase OS=Xenopus tropicalis GN=cmpk1 PE=2... [more]
KCY_MOUSE4.712e-3850.30UMP-CMP kinase OS=Mus musculus GN=Cmpk1 PE=1 SV=1[more]
KCY_BOVIN7.999e-3849.10UMP-CMP kinase OS=Bos taurus GN=CMPK1 PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC34100H02EF PostHarvP1 Citrus clementina cDNA clone C34100H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931048 ID=FC931048; Name=FC931048; organism=Citrus clementina; type=EST; length=699bp
CTGCCTTCTTTCTTTCCCTCCATATTCTTCTCTCTCTCTTTACCAAAACA
ACGCTCGCAATTCGCTAAGATCGGTTATTCAGACTGAGTTAGTTGGCGCT
GATGGGAACTGTGGTTGAAACTCCTGTCAAGGAAGCAGATGCTACCGTAA
CTGTGAAGAAGCCCACTGTTGTTTTTGTTTTGGGTGGACCAGGCAGTGGA
AAAGGAACCCAGTGCGCAAACATTGTTGAACACTTTGGATACACCCATCT
CAGTGCTGGTGATCTTCTCAGAGCCGAAATCAAATCTGGCTCTGAAAATG
GAACCATGATTCAGAACATGATTAAAGAGGGAAAAATCGTTCCTTCAGAG
GTCACAATTAAGCTTCTCCAAAAAGCAATGGAGGAAAGTGGAAATGATAA
ATTTCTCATCGATGGTTTTCCCAGAAACGAGGAAAATCGTGCTGCATTTG
AAGCTGTTACCAAAATTGAGCCAGAATTCGTTCTGTTTTTTGACTGTTCT
GAGGAGGAGATGGAGAGGCGCATTTTGAATAGGAATCAGGGAAGAGAAGA
TGATAACGTTGAGACAATTAGGAAGCGGTTTAAGGTTTTCTTAGAATCTA
GTCTCCCTGTGGTTCAATATTATGAAGCTAAGGGTAAGTTCGGAAGATTG
ATGCTGCAAAGCCTGTTGCAGAGGTTTTGATGCTGTTAAGCTGTTTTAC
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