FC931049

Overview
NameFC931049
Unique NameFC931049
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931049_ssr22 microsatellite FC931049_ssr22:22..31. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13706 contig Ccv1_Contig13706:22..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931049 vs. ExPASy Swiss-Prot
Match: IF2G_SCHPO (Eukaryotic translation initiation factor 2 subunit gamma OS=Schizosaccharomyces pombe GN=tif213 PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 5.916e-64
Identity = 115/148 (77.70%), Postives = 129/148 (87.16%), Query Frame = 2
Query:  233 LDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQ 676
            LD+++L P+ P +ISRQATINIGTIGHVAHGKSTVVKAISGV TVRFKNELERNITIKLGYANAKIYKC ++ CPRP CY++Y S KED+P C++    N  M L+RHVSFVDCPGHDILMATMLNGAA+MD ALLLIA NESCPQPQ
Sbjct:    5 LDISELSPIHPAIISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCSNEECPRPGCYRSYSSNKEDHPPCEIC---NSPMNLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQ 149          

HSP 2 Score: 25.7942 bits (55), Expect = 5.916e-64
Identity = 11/15 (73.33%), Postives = 12/15 (80.00%), Query Frame = 1
Query:  664 PATTTSEHLAAVEIM 708
            P   TSEHLAA+EIM
Sbjct:  146 PQPQTSEHLAAIEIM 160          
BLAST of FC931049 vs. ExPASy Swiss-Prot
Match: IF2G_YEAST (Eukaryotic translation initiation factor 2 subunit gamma OS=Saccharomyces cerevisiae GN=GCD11 PE=1 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.504e-63
Identity = 127/199 (63.82%), Postives = 153/199 (76.88%), Query Frame = 2
Query:  116 ISFTGLNITSGNTDNKERGIFKETGKMSRKGLMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQ---HRSTWQLLK 703
            ++FTGL       + K +  F+E G     GL EQ L+  D +KL+PLS E+I+RQATINIGTIGHVAHGKSTVV+AISGVQTVRFK+ELERNITIKLGYANAKIYKC++  CP P CY+++ S KE +P C  PG    R KL+RHVSFVDCPGHDILM+TML+GAA+MD ALLLIA NESCPQPQ   H +  +++K
Sbjct:   49 VAFTGLEEDGETEEEKRKREFEEGG-----GLPEQPLNP-DFSKLNPLSAEIINRQATINIGTIGHVAHGKSTVVRAISGVQTVRFKDELERNITIKLGYANAKIYKCQEPTCPEPDCYRSFKSDKEISPKCQRPGCPG-RYKLVRHVSFVDCPGHDILMSTMLSGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMK 240          
BLAST of FC931049 vs. ExPASy Swiss-Prot
Match: IF2G_CHICK (Eukaryotic translation initiation factor 2 subunit 3 OS=Gallus gallus GN=EIF2S3 PE=1 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.504e-63
Identity = 125/168 (74.40%), Postives = 137/168 (81.55%), Query Frame = 2
Query:  209 LMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQ---HRSTWQLLK 703
            L  QDL+ LDVTKL PLSPEVISRQATINIGTIGHVAHGKSTVVKAISGV TVRFKNELERNITIKLGYANAKIYK +D  C RP CY++ GS   D    D+PG +    KL+RHVSFVDCPGHDILMATMLNGAA+MD ALLLIA NESCPQPQ   H +  +++K
Sbjct:   15 LSRQDLATLDVTKLTPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKLDDPSCSRPECYRSCGSSTPDEFPTDIPGTKG-NFKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMK 181          
BLAST of FC931049 vs. ExPASy Swiss-Prot
Match: IF2G_RAT (Eukaryotic translation initiation factor 2 subunit 3 OS=Rattus norvegicus GN=Eif2s3 PE=1 SV=2)

HSP 1 Score: 242.276 bits (617), Expect = 1.964e-63
Identity = 125/168 (74.40%), Postives = 137/168 (81.55%), Query Frame = 2
Query:  209 LMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQ---HRSTWQLLK 703
            L  QDL+ LDVTKL PLS EVISRQATINIGTIGHVAHGKSTVVKAISGV TVRFKNELERNITIKLGYANAKIYK +D  CPRP CY++ GS   D    D+PG +    KL+RHVSFVDCPGHDILMATMLNGAA+MD ALLLIA NESCPQPQ   H +  +++K
Sbjct:   15 LSRQDLATLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGTKG-NFKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMK 181          
BLAST of FC931049 vs. ExPASy Swiss-Prot
Match: IF2G_PONAB (Eukaryotic translation initiation factor 2 subunit 3 OS=Pongo abelii GN=EIF2S3 PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.964e-63
Identity = 125/168 (74.40%), Postives = 137/168 (81.55%), Query Frame = 2
Query:  209 LMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQ---HRSTWQLLK 703
            L  QDL+ LDVTKL PLS EVISRQATINIGTIGHVAHGKSTVVKAISGV TVRFKNELERNITIKLGYANAKIYK +D  CPRP CY++ GS   D    D+PG +    KL+RHVSFVDCPGHDILMATMLNGAA+MD ALLLIA NESCPQPQ   H +  +++K
Sbjct:   15 LSRQDLTTLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGTKG-NFKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMK 181          
BLAST of FC931049 vs. ExPASy Swiss-Prot
Match: IF2G_MOUSE (Eukaryotic translation initiation factor 2 subunit 3, X-linked OS=Mus musculus GN=Eif2s3x PE=1 SV=2)

HSP 1 Score: 242.276 bits (617), Expect = 1.964e-63
Identity = 125/168 (74.40%), Postives = 137/168 (81.55%), Query Frame = 2
Query:  209 LMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQ---HRSTWQLLK 703
            L  QDL+ LDVTKL PLS EVISRQATINIGTIGHVAHGKSTVVKAISGV TVRFKNELERNITIKLGYANAKIYK +D  CPRP CY++ GS   D    D+PG +    KL+RHVSFVDCPGHDILMATMLNGAA+MD ALLLIA NESCPQPQ   H +  +++K
Sbjct:   15 LSRQDLATLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGTKG-NFKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMK 181          
BLAST of FC931049 vs. ExPASy Swiss-Prot
Match: IF2G_HUMAN (Eukaryotic translation initiation factor 2 subunit 3 OS=Homo sapiens GN=EIF2S3 PE=1 SV=3)

HSP 1 Score: 242.276 bits (617), Expect = 1.964e-63
Identity = 125/168 (74.40%), Postives = 137/168 (81.55%), Query Frame = 2
Query:  209 LMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQ---HRSTWQLLK 703
            L  QDL+ LDVTKL PLS EVISRQATINIGTIGHVAHGKSTVVKAISGV TVRFKNELERNITIKLGYANAKIYK +D  CPRP CY++ GS   D    D+PG +    KL+RHVSFVDCPGHDILMATMLNGAA+MD ALLLIA NESCPQPQ   H +  +++K
Sbjct:   15 LSRQDLTTLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGTKG-NFKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMK 181          
BLAST of FC931049 vs. ExPASy Swiss-Prot
Match: IF2H_MOUSE (Eukaryotic translation initiation factor 2 subunit 3, Y-linked OS=Mus musculus GN=Eif2s3y PE=2 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 4.375e-63
Identity = 123/168 (73.21%), Postives = 137/168 (81.55%), Query Frame = 2
Query:  209 LMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQ---HRSTWQLLK 703
            L  QDL+ LDVTKL PLS E+ISRQATINIGTIGHVAHGKSTVVKAISGV TVRFKNELERNITIKLGYANAKIYK +D  CPRP CY++ GS   D    D+PG +    +L+RHVSFVDCPGHDILMATMLNGAA+MD ALLLIA NESCPQPQ   H +  +++K
Sbjct:   15 LSRQDLATLDVTKLTPLSREIISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKLDDSSCPRPECYRSCGSSTPDEFPSDIPGTKG-NFRLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMK 181          
BLAST of FC931049 vs. ExPASy Swiss-Prot
Match: IF2G_BOVIN (Eukaryotic translation initiation factor 2 subunit 3 OS=Bos taurus GN=EIF2S3 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 5.714e-63
Identity = 124/168 (73.81%), Postives = 137/168 (81.55%), Query Frame = 2
Query:  209 LMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQ---HRSTWQLLK 703
            L  QDL+ LDV+KL PLS EVISRQATINIGTIGHVAHGKSTVVKAISGV TVRFKNELERNITIKLGYANAKIYK +D  CPRP CY++ GS   D    D+PG +    KL+RHVSFVDCPGHDILMATMLNGAA+MD ALLLIA NESCPQPQ   H +  +++K
Sbjct:   15 LSRQDLATLDVSKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGTKG-NFKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMK 181          
BLAST of FC931049 vs. ExPASy Swiss-Prot
Match: IF2GL_HUMAN (Eukaryotic translation initiation factor 2 subunit 3-like protein OS=Homo sapiens PE=1 SV=2)

HSP 1 Score: 239.58 bits (610), Expect = 1.273e-62
Identity = 123/168 (73.21%), Postives = 137/168 (81.55%), Query Frame = 2
Query:  209 LMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQ---HRSTWQLLK 703
            L  QDL+ LDVTKL PLS EVISRQATINIGTIGHVAHGKSTVVKAISGV TVRFKNELERNITIKLGYANAKIY+ +D  CPRP CY++ GS   D    D+PG +    +L+RHVSFVDCPGHDILMATMLNGAA+MD ALLLIA NESCPQPQ   H +  +++K
Sbjct:   15 LSRQDLTTLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYQLDDPSCPRPECYRSCGSSMPDEFPTDIPGTKG-NFRLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMK 181          
The following BLAST results are available for this feature:
BLAST of FC931049 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
IF2G_SCHPO5.916e-6477.70Eukaryotic translation initiation factor 2 subunit... [more]
IF2G_YEAST1.504e-6363.82Eukaryotic translation initiation factor 2 subunit... [more]
IF2G_CHICK1.504e-6374.40Eukaryotic translation initiation factor 2 subunit... [more]
IF2G_RAT1.964e-6374.40Eukaryotic translation initiation factor 2 subunit... [more]
IF2G_PONAB1.964e-6374.40Eukaryotic translation initiation factor 2 subunit... [more]
IF2G_MOUSE1.964e-6374.40Eukaryotic translation initiation factor 2 subunit... [more]
IF2G_HUMAN1.964e-6374.40Eukaryotic translation initiation factor 2 subunit... [more]
IF2H_MOUSE4.375e-6373.21Eukaryotic translation initiation factor 2 subunit... [more]
IF2G_BOVIN5.714e-6373.81Eukaryotic translation initiation factor 2 subunit... [more]
IF2GL_HUMAN1.273e-6273.21Eukaryotic translation initiation factor 2 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC34100H03EF PostHarvP1 Citrus clementina cDNA clone C34100H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931049 ID=FC931049; Name=FC931049; organism=Citrus clementina; type=EST; length=710bp
GCAAAACCTAAAATTCTCTCTCACACACACACCCTCTCACAATCAATATA
GCGGTAAACCTCAGTCAAATCTCGGTCTCGCAGTCGTTCTCCGGCCGCAA
CTTGCTCTGCATTCAATCAGTTTTACGGGCTTGAACATTACTAGTGGCAA
TACAGACAATAAGGAGAGGGGTATTTTCAAAGAAACAGGCAAGATGTCAC
GGAAGGGTTTGATGGAACAGGACTTGAGTAAGTTGGATGTAACTAAGTTG
CATCCTCTTTCTCCTGAAGTCATTTCTCGCCAGGCTACTATTAATATTGG
AACTATCGGTCATGTGGCCCATGGCAAATCAACTGTTGTGAAGGCAATAT
CTGGTGTTCAGACTGTTCGTTTTAAGAATGAATTAGAGCGTAACATTACT
ATCAAGCTTGGATATGCAAATGCCAAGATATACAAATGTGAAGATGATCG
TTGCCCACGACCAATGTGCTATAAGGCATATGGAAGTGGGAAAGAAGATA
ATCCTCTGTGCGATGTGCCTGGTTTTGAGAACTGCAGGATGAAATTGCTT
AGGCATGTCTCTTTTGTTGATTGCCCGGGTCATGATATTCTTATGGCTAC
AATGCTTAATGGAGCAGCAATTATGGATGGAGCATTGCTTCTCATAGCAG
CCAATGAAAGTTGCCCGCAACCACAACATCGGAGCACTTGGCAGCTGTTG
AAATCATGCG
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