FC931054

Overview
NameFC931054
Unique NameFC931054
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig737 contig Ccv1_Contig737:158..883. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931054 vs. ExPASy Swiss-Prot
Match: TPPC1_RAT (Trafficking protein particle complex subunit 1 OS=Rattus norvegicus GN=Trappc1 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.367e-27
Identity = 63/147 (42.86%), Postives = 97/147 (65.99%), Query Frame = 3
Query:  138 HMMYVFNRNGVCLLYREWNRLLHT-LNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYN-LYVEYVVKNPLYAPGTPIRSELFNTSLDQYVRTI 572
            H +Y+F+RNGVCL Y EW+R     +  ++++KLM+G+LFS++S  +KM P + + G             F SF+T+ YKL + E+P+GIK+++ T    G +R+ L +IY+ LYVE+VVKNPL   G  ++SELF + LD YVR++
Sbjct:    4 HNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-------------FLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFVVKNPLCPLGQTVQSELFRSRLDSYVRSL 137          
BLAST of FC931054 vs. ExPASy Swiss-Prot
Match: TPPC1_MOUSE (Trafficking protein particle complex subunit 1 OS=Mus musculus GN=Trappc1 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.367e-27
Identity = 63/147 (42.86%), Postives = 97/147 (65.99%), Query Frame = 3
Query:  138 HMMYVFNRNGVCLLYREWNRLLHT-LNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYN-LYVEYVVKNPLYAPGTPIRSELFNTSLDQYVRTI 572
            H +Y+F+RNGVCL Y EW+R     +  ++++KLM+G+LFS++S  +KM P + + G             F SF+T+ YKL + E+P+GIK+++ T    G +R+ L +IY+ LYVE+VVKNPL   G  ++SELF + LD YVR++
Sbjct:    4 HNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-------------FLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFVVKNPLCPLGQTVQSELFRSRLDSYVRSL 137          
BLAST of FC931054 vs. ExPASy Swiss-Prot
Match: TPPC1_HUMAN (Trafficking protein particle complex subunit 1 OS=Homo sapiens GN=TRAPPC1 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.860e-27
Identity = 62/147 (42.18%), Postives = 96/147 (65.31%), Query Frame = 3
Query:  138 HMMYVFNRNGVCLLYREWNRLLHT-LNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYN-LYVEYVVKNPLYAPGTPIRSELFNTSLDQYVRTI 572
            H +Y+F+RNGVCL Y EW+R     +  ++++KLM+G+LFS++S  +KM P + + G             F +F+T+ YKL + E+P+GIK+++ T    G +R+ L +IY+ LYVE VVKNPL   G  ++SELF + LD YVR++
Sbjct:    4 HNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-------------FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELVVKNPLCPLGQTVQSELFRSRLDSYVRSL 137          
BLAST of FC931054 vs. ExPASy Swiss-Prot
Match: TPPC1_BOVIN (Trafficking protein particle complex subunit 1 OS=Bos taurus GN=TRAPPC1 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.860e-27
Identity = 62/147 (42.18%), Postives = 96/147 (65.31%), Query Frame = 3
Query:  138 HMMYVFNRNGVCLLYREWNRLLHT-LNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYN-LYVEYVVKNPLYAPGTPIRSELFNTSLDQYVRTI 572
            H +Y+F+RNGVCL Y EW+R     +  ++++KLM+G+LFS++S  +KM P + + G             F +F+T+ YKL + E+P+GIK+++ T    G +R+ L +IY+ LYVE VVKNPL   G  ++SELF + LD YVR++
Sbjct:    4 HNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-------------FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELVVKNPLCPLGQTVQSELFRSRLDSYVRSL 137          
BLAST of FC931054 vs. ExPASy Swiss-Prot
Match: TPPC1_DICDI (Trafficking protein particle complex subunit 1 OS=Dictyostelium discoideum GN=trappc1-1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.415e-24
Identity = 52/142 (36.62%), Postives = 86/142 (60.56%), Query Frame = 3
Query:  144 MYVFNRNGVCLLYREWNRLLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYN-LYVEYVVKNPLYAPGTPIRSELFNTSLDQYVR 566
            +Y+FN++G C+ Y +WN+   + N  +D KL+FG+L+SLK+      P   +               FH ++T+TYKL + E+ S IK I+++ P   DLR+ LK IY+ ++VEYV+KNP+Y  GT ++ + F   L+ Y++
Sbjct:    5 IYIFNKDGTCIYYEDWNKKKQSQNQSEDQKLLFGMLYSLKAFITSSSPKKID-----------DKTGFHCYKTSTYKLHYYETLSCIKFIIMSDPNVPDLRDDLKKIYSQIFVEYVIKNPIYKHGTTVKCDTFINQLNLYLK 135          
BLAST of FC931054 vs. ExPASy Swiss-Prot
Match: BET5_SCHPO (Transport protein particle subunit bet5 OS=Schizosaccharomyces pombe GN=bet5 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.327e-14
Identity = 50/165 (30.30%), Postives = 85/165 (51.52%), Query Frame = 3
Query:  138 HMMYVFNRNGVCLLYREWN----RLLHTLNAQQDH--------KLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIY-NLYVEYVVKNPLYAPGTP------IRSELFNTSLDQYVRTIA 575
            +  Y+++R   C+    W       + TL +Q +         KL+FG++FSL+++  K+     +               F S+ T+ YKL F E+P+ +++I +T+P+   L   L+ IY  LYVE+VVK+PLY    P      I  E+F  +LD++VRT++
Sbjct:    4 YAFYIYSRKCECVFAHRWKPSDRNSMETLVSQLEQNSIEDDMEKLIFGVVFSLRNMVKKITADQDQ---------------FMSYTTSKYKLHFYETPTNLRLIFITNPKIDSLTHVLQQIYTTLYVEFVVKHPLYTHVPPSAEEGGINCEIFRITLDRFVRTLS 153          
The following BLAST results are available for this feature:
BLAST of FC931054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
TPPC1_RAT1.367e-2742.86Trafficking protein particle complex subunit 1 OS=... [more]
TPPC1_MOUSE1.367e-2742.86Trafficking protein particle complex subunit 1 OS=... [more]
TPPC1_HUMAN8.860e-2742.18Trafficking protein particle complex subunit 1 OS=... [more]
TPPC1_BOVIN8.860e-2742.18Trafficking protein particle complex subunit 1 OS=... [more]
TPPC1_DICDI1.415e-2436.62Trafficking protein particle complex subunit 1 OS=... [more]
BET5_SCHPO1.327e-1430.30Transport protein particle subunit bet5 OS=Schizos... [more]
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Properties
Property NameValue
Genbank descriptionC34100H08EF PostHarvP1 Citrus clementina cDNA clone C34100H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931054 ID=FC931054; Name=FC931054; organism=Citrus clementina; type=EST; length=726bp
AGTAGATTTCGAGCCCTCCTCCCAATTCTTCGTTTCAAATTCAATCTACT
CTTCGCAGGAAAAAGAAAATGCAGTTCTTTGGAGGGTCAGAGATCAGTCC
ATCACCGCCGGTGCCAACGGCGTCCGGTAACAATGCCCACATGATGTACG
TGTTCAATAGGAATGGCGTTTGTTTGCTTTACAGGGAATGGAATCGCCTT
CTTCACACTCTCAACGCTCAACAAGACCACAAGCTCATGTTTGGTCTTCT
CTTCTCCCTCAAGTCCTTGACTGCCAAAATGGATCCCACTAATGCAGAGA
AAGGAAACTTGGGGGTGCCCCAATTATCAGGCCAAGGTTGTTCATTTCAC
AGTTTTCGTACTAATACATACAAACTTAGTTTCATGGAAAGTCCATCTGG
AATCAAGATTATCTTGGTCACTCATCCCAGGACTGGTGATCTACGTGAGT
CCCTAAAGTACATATACAACTTGTATGTTGAATATGTTGTCAAGAATCCA
TTATATGCTCCAGGAACTCCTATCAGGAGTGAGCTATTTAATACATCACT
TGATCAGTATGTAAGAACAATTGCATAGATGTTCAAGTCTATACTCATTC
TTGGCCACAAAAGTACAATCTCTTCAGATGGAGGCTTGTTCATCTTCCTC
CTTAGCAGGCATCCAGCTCCAATTAAGAATGTCTTGTGCAGATACGTTCT
GTTAATCAGTGAACTTTGTGCACATT
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