FC931109

Overview
NameFC931109
Unique NameFC931109
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931109_ssr556 microsatellite FC931109_ssr556:556..576. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15278 contig Ccv1_Contig15278:1..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931109 vs. ExPASy Swiss-Prot
Match: ATG3_ARATH (Autophagy-related protein 3 OS=Arabidopsis thaliana GN=ATG3 PE=2 SV=2)

HSP 1 Score: 290.812 bits (743), Expect = 4.911e-78
Identity = 146/205 (71.22%), Postives = 169/205 (82.44%), Query Frame = 2
Query:  107 MELQHKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCDEDEDDNLPSMEAVEISNNNNVRAISTYFGGXXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYLVAHEPE**YILRTRTYDIS 721
            M L  K +  FKGTVE+IT  RT+SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESG+ SKRK YLP+DKQFLITRNVPCLRRAASV E+YE AGGE+LVD+EDNDGWLATHGKPK K    E+DNLPSM+A++I+  N +++I TYFGG       DIPDM E++E D+++EN  DPATL STYLVAHEP+   ILRTRTYD+S
Sbjct:    1 MVLSQKLHEAFKGTVERITGPRTISAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGDASKRKPYLPSDKQFLITRNVPCLRRAASVAEDYEAAGGEVLVDDEDNDGWLATHGKPKDK--GKEEDNLPSMDALDINEKNTIQSIPTYFGG---EEDDDIPDMEEFDEADNVVEN--DPATLQSTYLVAHEPDDDNILRTRTYDLS 198          
BLAST of FC931109 vs. ExPASy Swiss-Prot
Match: ATG3_DICDI (Autophagy-related protein 3 OS=Dictyostelium discoideum GN=atg3 PE=3 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 1.038e-27
Identity = 85/236 (36.02%), Postives = 120/236 (50.85%), Query Frame = 2
Query:  104 IMELQHKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAASVEEEYEGA-GGEILVDNEDNDGWLATHGKPKAKCDEDEDD--------------NLPSMEAVEISNNNNVRAISTYFGGXXXXXXXDIPDMAEYNEPDSIIENETDPATL-----PSTYLVAHE----------PE**YILRTRTYDIS 721
            +   Q   +  +  TVEK+T   + S F E+GVL+  EFV AGD L  KC TW+WESG+PS+  SYLP +KQFL+TRNVPC  R  ++E E + +   EI ++++  D W+A   +P    D+ ED+              N  +    + +NNNN                 DIPD+ ++ + D+IIE E DPA L      +T   A+            +   ILRTRTYDIS
Sbjct:    2 LTSFQQAVHKAYVKTVEKVTPTLSTSKFLEEGVLTPEEFVQAGDLLTDKCQTWTWESGDPSRNVSYLPKEKQFLLTRNVPCYNRVRTLENESKASKADEIQIEDDGEDSWVAP--QPVGNQDDIEDEKVDISSLKIDDKKPNTTTTTTAKPTNNNN-----NNNDDEDEDEDGDIPDLDDFQD-DNIIEEE-DPAVLSKNNKTTTTTTANNNNNNNSENKVEDNDNILRTRTYDIS 228          
BLAST of FC931109 vs. ExPASy Swiss-Prot
Match: ATG3_DANRE (Autophagy-related protein 3 OS=Danio rerio GN=atg3 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.716e-22
Identity = 77/209 (36.84%), Postives = 103/209 (49.28%), Query Frame = 2
Query:  131 GIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDND-GWLAT-HGKPKAKCDEDEDDNLPSMEAVEISNNNNVRA-ISTYFGGXXXXXXXD----IPDMAEYNEPDSIIENETDPATLPSTYLV------AHEPE**YILRTRTYDI 718
            G   G  E +T     S FKE GV++  EFV AGD+LV  CPTW W SGE +K K YLP DKQFL+TRNVPC +R   +E   E    E +++ +D D GW+ T H        E       ++  + + N +N+   + T   G       D      DM EY E   +   ETD ATL ++ +       A       IL+TRTYD+
Sbjct:   10 GTALGVAEFLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWKWASGEEAKVKPYLPNDKQFLLTRNVPCYKRCKQMEYSDE---LEAIIEEDDGDGGWVDTFHNSGVTGVTE-------AVREISLDNKDNMNMNVKTGACGNSGDDDDDEEGEAADMEEYEESGLL---ETDDATLDTSKMADLSKTKAEAGGEDAILQTRTYDL 205          
BLAST of FC931109 vs. ExPASy Swiss-Prot
Match: ATG3_MOUSE (Autophagy-related protein 3 OS=Mus musculus GN=Atg3 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.236e-21
Identity = 70/198 (35.35%), Postives = 101/198 (51.01%), Query Frame = 2
Query:  152 EKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDND-GWLATHGKP--KAKCDEDEDDNLPSMEAVEISNNNNVRAISTYFGGXXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYLV------AHEPE**YILRTRTYDI 718
            E +T     S FKE GV++  EFV AGD+LV  CPTW W +GE  K K+YLP DKQFL+T+NVPC +R   +E   E    E +++ +D D GW+ T+         +  ++  L S +++++ +       S            +  DM EY E   +   ETD ATL +  +V      A       IL+TRTYD+
Sbjct:   17 EYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEELKVKAYLPTDKQFLVTKNVPCYKRCKQMEYSDE---LEAIIEEDDGDGGWVDTYHNTGITGITEAVKEITLESKDSIKLQD------CSALCDEEDEEDEGEAADMEEYEESGLL---ETDEATLDTRKIVEACKAKADAGGEDAILQTRTYDL 202          
BLAST of FC931109 vs. ExPASy Swiss-Prot
Match: ATG3_HUMAN (Autophagy-related protein 3 OS=Homo sapiens GN=ATG3 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.414e-21
Identity = 71/199 (35.68%), Postives = 99/199 (49.75%), Query Frame = 2
Query:  152 EKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDND-GWLAT-HGKPKAKCDEDEDDNLPSMEAVEISNNNNVRA--ISTYFGGXXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYLV------AHEPE**YILRTRTYDI 718
            E +T     S FKE GV++  EFV AGD+LV  CPTW W +GE  K K+YLP  KQFL+T+NVPC +R   +E   E    E +++ +D D GW+ T H        E       +++ + + N +N+R    S            +  DM EY E   +   ETD ATL +  +V              IL+TRTYD+
Sbjct:   17 EYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEELKVKAYLPTGKQFLVTKNVPCYKRCKQMEYSDE---LEAIIEEDDGDGGWVDTYHNTGITGITE-------AVKEITLENKDNIRLQDCSALCEEEEDEDEGEAADMEEYEESGLL---ETDEATLDTRKIVEACKAKTDAGGEDAILQTRTYDL 202          
BLAST of FC931109 vs. ExPASy Swiss-Prot
Match: ATG3_PENCW (Autophagy-related protein 3 OS=Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) GN=atg3 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.606e-20
Identity = 64/167 (38.32%), Postives = 84/167 (50.30%), Query Frame = 2
Query:  179 SAFKEKGVLSVSEFVLAGDNLVSKCPTWSW-ESGEPSKRKSYLPADKQFLITRNVPCLRRA-------ASVEEEY------EGAGGEILVDNEDNDGWLATHGKPKAKCDEDEDDNLPSMEAVEISNNNNVRAISTYFGGXXXXXXXDIPDMAEYNEPDSIIENETD 637
            S F+  G ++  EFVLAGD LV K PTWSW ++  P+KR SYLP  KQFL+TR VPC RR        A +E+E        G GGE  V ++  DGWL T G   A  D D+ +          +   +VR +             DIPDM + ++ +  I  ETD
Sbjct:   22 STFRNTGQITPEEFVLAGDYLVYKFPTWSWADASSPAKRVSYLPDGKQFLVTRGVPCHRRLNDNFAGDAGLEDEIVRDFLSGGDGGEGTVADDGEDGWLRTGGGRDAGADHDKQE----------ARIRDVRTVDESGNLGEQEEDDDIPDMEDEDDDEEAIIRETD 178          
BLAST of FC931109 vs. ExPASy Swiss-Prot
Match: ATG3_RAT (Autophagy-related protein 3 OS=Rattus norvegicus GN=Atg3 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.097e-20
Identity = 69/198 (34.85%), Postives = 100/198 (50.51%), Query Frame = 2
Query:  152 EKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDND-GWLATHGKP--KAKCDEDEDDNLPSMEAVEISNNNNVRAISTYFGGXXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYLV------AHEPE**YILRTRTYDI 718
            E +T     S FKE GV++  EFV AGD+LV  CPTW W +GE  K K+YLP  KQFL+T+NVPC +R   +E   E    E +++ +D D GW+ T+         +  ++  L S +++++ +       S            +  DM EY E   +   ETD ATL +  +V      A       IL+TRTYD+
Sbjct:   17 EYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEELKVKAYLPTGKQFLVTKNVPCYKRCKQMEYSDE---LEAIIEEDDGDGGWVDTYHNTGITGITEAVKEITLESKDSIKLQD------CSVLCDEEEEEEEGEAADMEEYEESGLL---ETDEATLDTRRIVEACKAKADAGGEDAILQTRTYDL 202          
BLAST of FC931109 vs. ExPASy Swiss-Prot
Match: ATG3_BOVIN (Autophagy-related protein 3 OS=Bos taurus GN=ATG3 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.577e-20
Identity = 71/198 (35.86%), Postives = 101/198 (51.01%), Query Frame = 2
Query:  152 EKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDND-GWLAT-HGKPKAKCDED-EDDNLPSMEAVEISNNNNVRAISTYFGGXXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYLV------AHEPE**YILRTRTYDI 718
            E +T     S FKE GV++  EFV AGD+LV  CPTW W +GE  K K+YLP+ KQFL+T+NVPC +R   +E   E    E +++ +D D GW+ T H    A   E  ++  L S +++++ +       S            +  DM EY E   +   ETD ATL +  +V              IL+TRTYD+
Sbjct:   17 EYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEELKVKAYLPSGKQFLVTKNVPCYKRCKQMEYSDE---LEAIIEEDDGDGGWVDTYHNTGIAGITEAVKEITLESKDSIKLQD------CSALCEEEEEEDEGEAADMEEYEESGLL---ETDEATLDTRKIVEACKAKTDAGGEDAILQTRTYDL 202          
BLAST of FC931109 vs. ExPASy Swiss-Prot
Match: ATG3_XENTR (Autophagy-related protein 3 OS=Xenopus tropicalis GN=atg3 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.775e-19
Identity = 68/197 (34.52%), Postives = 104/197 (52.79%), Query Frame = 2
Query:  152 EKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDND-GWLAT-HGKPKAKCDEDEDDNLPSMEAVEISNNNNVRAISTYFGGXXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYL-VAHEPE**Y-----ILRTRTYDI 718
            E +T     S FKE GV++  EF+ AGD+LV  CPTW W +GE SK K YLP DKQFL+T+NVPC +R   +E   E    E +++ +D D GW+ T H       +  ++  L + +  + ++N  V                +  DM +Y E   +++N  D AT+ ++ +  A +P+        IL+TRTYD+
Sbjct:   17 EYLTPVLKESKFKETGVITPEEFLAAGDHLVHHCPTWQWSAGEESKIKPYLPNDKQFLMTKNVPCYKRCKQMEYSDE---QEAIIEEDDGDGGWVDTFHHSLTGVTEAVKEITLETQDCGKTTSNIAV-------DDDDDDDEGEAADMEDYEE-SGLLDN--DDATVDTSKIKEACKPKADLGGEDAILQTRTYDL 200          
BLAST of FC931109 vs. ExPASy Swiss-Prot
Match: ATG3_XENLA (Autophagy-related protein 3 OS=Xenopus laevis GN=atg3 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.319e-19
Identity = 69/198 (34.85%), Postives = 104/198 (52.53%), Query Frame = 2
Query:  152 EKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDND-GWLAT--HGKPKAKCDEDEDDNLPSMEAVEISNNNNVRAISTYFGGXXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYL-VAHEPE**Y-----ILRTRTYDI 718
            E +T     S FKE GV++  EF+ AGD+LV  CPTW W +GE SK K YLP DKQFL+T+NVPC +R   +E   E    E +++ +D D GW+ T  H       +  ++  L + +  + ++N  V                +  DM +Y E   ++EN  D AT+ ++ +  A +P+        IL+TRTYD+
Sbjct:   17 EYLTPVLKESKFKETGVITPEEFLAAGDHLVHHCPTWQWSAGEESKIKPYLPNDKQFLMTKNVPCYKRCKQMEYSDE---QEAIIEEDDGDGGWVDTFHHTGLSGVTEAVKEITLETQDCGKTTDNIAV-------CDDDDDDEGEAADMEDYEE-SGLLEN--DDATVDTSKIKEACKPKADLGGEDAILQTRTYDL 201          
The following BLAST results are available for this feature:
BLAST of FC931109 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
ATG3_ARATH4.911e-7871.22Autophagy-related protein 3 OS=Arabidopsis thalian... [more]
ATG3_DICDI1.038e-2736.02Autophagy-related protein 3 OS=Dictyostelium disco... [more]
ATG3_DANRE1.716e-2236.84Autophagy-related protein 3 OS=Danio rerio GN=atg3... [more]
ATG3_MOUSE3.236e-2135.35Autophagy-related protein 3 OS=Mus musculus GN=Atg... [more]
ATG3_HUMAN9.414e-2135.68Autophagy-related protein 3 OS=Homo sapiens GN=ATG... [more]
ATG3_PENCW1.606e-2038.32Autophagy-related protein 3 OS=Penicillium chrysog... [more]
ATG3_RAT2.097e-2034.85Autophagy-related protein 3 OS=Rattus norvegicus G... [more]
ATG3_BOVIN3.577e-2035.86Autophagy-related protein 3 OS=Bos taurus GN=ATG3 ... [more]
ATG3_XENTR1.775e-1934.52Autophagy-related protein 3 OS=Xenopus tropicalis ... [more]
ATG3_XENLA2.319e-1934.85Autophagy-related protein 3 OS=Xenopus laevis GN=a... [more]

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Properties
Property NameValue
Genbank descriptionC34101E09EF PostHarvP1 Citrus clementina cDNA clone C34101E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931109 ID=FC931109; Name=FC931109; organism=Citrus clementina; type=EST; length=722bp
GGAAAAAAACGATTCTTTTCCTCTCCTTCGCAAAAATTAGGGTTTTCAAA
TTGGCACTAAAATTCTGCAAATCAGTTTTGAAAAAGAAATCTAAATTAAC
AAAATCATGGAACTTCAACACAAATTCTACGGCATATTTAAGGGAACTGT
AGAGAAAATCACAAGTCACCGCACTGTCTCTGCCTTTAAAGAAAAAGGCG
TTCTCAGCGTCAGCGAATTCGTTCTCGCCGGCGACAATCTCGTCTCCAAA
TGCCCCACCTGGTCATGGGAATCGGGTGAGCCGAGCAAGAGGAAGTCTTA
TTTACCAGCGGATAAGCAGTTCTTGATTACTAGAAACGTTCCGTGTCTAA
GAAGAGCTGCTTCGGTGGAGGAAGAGTATGAAGGTGCTGGAGGGGAAATT
TTGGTTGATAATGAAGATAATGATGGTTGGCTGGCGACTCACGGGAAACC
AAAAGCTAAATGTGATGAGGATGAGGATGACAACTTGCCGTCCATGGAGG
CCGTCGAAATAAGCAACAACAATAATGTTCGAGCAATTTCTACCTACTTT
GGGGGGGAGGAGGAGGAGGAGGAGGAAGATATTCCTGATATGGCAGAGTA
CAATGAACCTGACAGCATAATTGAAAACGAAACAGATCCTGCAACTCTTC
CATCTACATATCTTGTGGCACATGAACCTGAATGATGATACATTCTCCGA
ACTCGAACTTACGATATCAGCA
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