FC931123

Overview
NameFC931123
Unique NameFC931123
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7073 contig Ccv1_Contig7073:163..880. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931123 vs. ExPASy Swiss-Prot
Match: OPDA_HAEIN (Oligopeptidase A OS=Haemophilus influenzae GN=prlC PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.279e-32
Identity = 68/197 (34.52%), Postives = 118/197 (59.90%), Query Frame = 1
Query:   97 NPLLQDFEFPPFDVVKAEHVRPGIRALLKQLESDLDELERTVEPSWPKLVEPLEKIVDQLTVVWGMINHLKSVKDTPELRSAIEEVQPEKVKFQLRLGQSKPIYNAFKAIQESPEWNALSHARKRIVESQIKEAVLNGVSLEDDKREQFNKIEQELEKLSHKFSENVLDATKKFEKLNNR*KEIEGLPATALGLAAQ 687
            NPLL     PPF  +K EH+RP +  L++   + ++++ +    +W   + PL +  D+L   W  ++HL SVK++ ELR A +   P   ++   +GQ K +YNA+ A++ S E+   S A+K+ +E+ +++  L+G+ L ++K++++ +I   L +L+ +FS NVLDAT  +EKL     E+ GLP +AL  A Q
Sbjct:    5 NPLLNIQGLPPFSQIKPEHIRPAVEKLIQDCRNTIEQVLKQPHFTWENFILPLTETNDRLNRAWSPVSHLNSVKNSTELREAYQTCLPLLSEYSTWVGQHKGLYNAYLALKNSAEFADYSIAQKKAIENSLRDFELSGIGLSEEKQQRYGEIVARLSELNSQFSNNVLDATMGWEKLIENEAELAGLPESALQAAQQ 201          
BLAST of FC931123 vs. ExPASy Swiss-Prot
Match: OPDA_SALTY (Oligopeptidase A OS=Salmonella typhimurium GN=prlC PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.877e-29
Identity = 67/199 (33.67%), Postives = 116/199 (58.29%), Query Frame = 1
Query:   97 NPLLQDFEFPPFDVVKAEHVRPGIRALLKQLESDLDELERTVEP-SWPKLVEPLEKIVDQLTVVWGMINHLKSVKDTPELRSAIEEVQPEKVKFQLRLGQSKPIYNAFKAIQESPEWNALSHARKRIVESQIKEAVLNGVSLEDDKREQFNKIEQELEKLSHKFSENVLDATKKFEKLNNR*KEIEGLPATALGLAAQQ 690
            NPLL  F  PPF  +K EHV P +   L    + ++ +     P SW  L +PL +  D L  ++  I+HL SVK++PELR A E+  P   ++   +GQ + +YNA++ +++   +  L+ A+K+ V++ +++  L+G+ L  +K++++ +I   L +L +++S NVLDAT  + KL     E+ G+P +AL  A  Q
Sbjct:    3 NPLLTSFSLPPFSAIKPEHVVPAVTKALADCRAAVEGVVAHGAPYSWENLCQPLAEADDVLGRIFSPISHLNSVKNSPELREAYEQTLPLLSEYSTWVGQHEGLYNAYRDLRDGDHYATLNTAQKKAVDNALRDFELSGIGLPKEKQQRYGEIATRLSELGNQYSNNVLDATMGWTKLITDEAELAGMPESALAAAKAQ 201          
BLAST of FC931123 vs. ExPASy Swiss-Prot
Match: OPDA_ECOLI (Oligopeptidase A OS=Escherichia coli (strain K12) GN=prlC PE=3 SV=3)

HSP 1 Score: 127.487 bits (319), Expect = 7.134e-29
Identity = 64/199 (32.16%), Postives = 116/199 (58.29%), Query Frame = 1
Query:   97 NPLLQDFEFPPFDVVKAEHVRPGIRALLKQLESDLDELERTVEP-SWPKLVEPLEKIVDQLTVVWGMINHLKSVKDTPELRSAIEEVQPEKVKFQLRLGQSKPIYNAFKAIQESPEWNALSHARKRIVESQIKEAVLNGVSLEDDKREQFNKIEQELEKLSHKFSENVLDATKKFEKLNNR*KEIEGLPATALGLAAQQ 690
            NPLL  FE PPF  +  EHV P +   L     +++ +     P +W  L +PL ++ D L  ++  ++HL SVK++PELR A E+  P   ++   +GQ + +Y A++ +++   +  L+ A+K+ V++ +++  L+G+ L  +K++++ +I   L +L +++S NVLDAT  + KL     E+ G+P +AL  A  Q
Sbjct:    3 NPLLTPFELPPFSKILPEHVVPAVTKALNDCRENVERVVAQGAPYTWENLCQPLAEVDDVLGRIFSPVSHLNSVKNSPELREAYEQTLPLLSEYSTWVGQHEGLYKAYRDLRDGDHYATLNTAQKKAVDNALRDFELSGIGLPKEKQQRYGEIATRLSELGNQYSNNVLDATMGWTKLVTDEAELAGMPESALAAAKAQ 201          
The following BLAST results are available for this feature:
BLAST of FC931123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
OPDA_HAEIN5.279e-3234.52Oligopeptidase A OS=Haemophilus influenzae GN=prlC... [more]
OPDA_SALTY1.877e-2933.67Oligopeptidase A OS=Salmonella typhimurium GN=prlC... [more]
OPDA_ECOLI7.134e-2932.16Oligopeptidase A OS=Escherichia coli (strain K12) ... [more]
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Properties
Property NameValue
Genbank descriptionC34101G01EF PostHarvP1 Citrus clementina cDNA clone C34101G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931123 ID=FC931123; Name=FC931123; organism=Citrus clementina; type=EST; length=718bp
CTCTCTTTCTCTTCTAGTTCTACTTGCCCCCCTTCTTCACTCTCTATGGC
CGCCTCCGCGACTGCTTCTGCTGTTGATGACTTATCTCTCAAAGACAATC
CGTTGTTGCAGGACTTTGAGTTTCCTCCTTTTGATGTCGTTAAGGCCGAG
CATGTCCGGCCTGGGATTCGTGCTCTTTTGAAACAACTGGAAAGTGATTT
GGATGAACTGGAGAGAACAGTGGAGCCGTCATGGCCAAAGTTGGTGGAGC
CACTGGAGAAGATTGTAGATCAACTGACTGTTGTTTGGGGGATGATCAAT
CATCTGAAGTCTGTTAAGGACACTCCTGAGCTCCGTTCTGCCATTGAAGA
AGTCCAGCCAGAGAAAGTGAAGTTTCAGCTTCGTTTGGGTCAAAGCAAAC
CCATCTACAATGCATTCAAAGCTATTCAAGAATCTCCTGAATGGAATGCT
TTGAGTCATGCTCGCAAACGTATAGTCGAATCACAAATAAAGGAAGCGGT
TCTCAATGGTGTCTCACTGGAAGATGATAAACGAGAACAATTTAACAAGA
TTGAGCAGGAACTGGAAAAACTCTCTCATAAATTTTCGGAGAATGTTTTG
GACGCCACAAAGAAATTTGAAAAGTTAAATAACCGATAGAAAGAAATTGA
AGGATTACCTGCCACTGCTCTTGGTTTGGCTGCACAACAGCGTTGTCCAG
GGGCATGAAATGCACTGC
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