FC931127

Overview
NameFC931127
Unique NameFC931127
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length624
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15119 contig Ccv1_Contig15119:31..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931127 vs. ExPASy Swiss-Prot
Match: CLPR4_ARATH (ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic OS=Arabidopsis thaliana GN=CLPR4 PE=1 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 1.702e-62
Identity = 126/187 (67.38%), Postives = 143/187 (76.47%), Query Frame = 1
Query:   43 MEVATVSAPIFG-LRTRMLATPP------RTSPR---TVNCNRNLSTSFISPFANGSVSSDFSGLRLRPDCLNPDSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 573
            MEVA  +A  F  LR R  A  P      R+ PR   + +   +LS  F+SP+  GS+SSD  G +LR + LNP +F  SKP+  V+TMVIPF+ G+A EQPPPDLASYL+KNRIVYLGMS VPSVTELILAEFLYLQYED EKPIYLYINSTGTTK GEKLGY+TEAFAIYDVMGYVKPPIFTLCV
Sbjct:    1 MEVAAATATSFTTLRARTSAIIPSSTRNLRSKPRFSSSSSLRASLSNGFLSPYTGGSISSDLCGAKLRAESLNPLNFSSSKPKRGVVTMVIPFSKGSAHEQPPPDLASYLFKNRIVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTKNGEKLGYDTEAFAIYDVMGYVKPPIFTLCV 187          
BLAST of FC931127 vs. ExPASy Swiss-Prot
Match: CLPR_SYNE7 (Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechococcus elongatus (strain PCC 7942) GN=clpR PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.137e-24
Identity = 55/107 (51.40%), Postives = 72/107 (67.29%), Query Frame = 1
Query:  286 PFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPS----------VTELILAEFLYLQYEDAEKPIYLYINSTGTT-KGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 573
            P+    ++  PPPDL S L K RI+YLGM    S          VTELI+A+ LYL++++ EKPIY YINSTGT+   G+ +GYETEAFAI D M Y+KPP+ T+C+
Sbjct:   11 PYYGDVSYRTPPPDLPSLLLKERIIYLGMPLFSSDDVKRQVGFDVTELIIAQLLYLEFDNPEKPIYFYINSTGTSWYTGDAIGYETEAFAICDTMRYIKPPVHTICI 117          
BLAST of FC931127 vs. ExPASy Swiss-Prot
Match: CLPR_SYNY3 (Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechocystis sp. (strain PCC 6803) GN=clpR PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.034e-23
Identity = 54/101 (53.47%), Postives = 71/101 (70.30%), Query Frame = 1
Query:  304 AWEQPPPDLASYLYKNRIVYLGMSFVPS----------VTELILAEFLYLQYEDAEKPIYLYINSTGTT-KGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 573
            A++ PPPDL S L K RIVYLGM    S          VT+LI+A+ LYLQ++D +KPIY YINSTGT+   G+ +G+ETEAFAI D + Y+KPP+ T+C+
Sbjct:   15 AFKTPPPDLESLLLKERIVYLGMPLFSSDEVKQQVGIDVTQLIIAQLLYLQFDDPDKPIYFYINSTGTSWYTGDAVGFETEAFAICDTLNYIKPPVHTICI 115          
BLAST of FC931127 vs. ExPASy Swiss-Prot
Match: CLPR3_ARATH (ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic OS=Arabidopsis thaliana GN=CLPR3 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.009e-22
Identity = 50/87 (57.47%), Postives = 66/87 (75.86%), Query Frame = 1
Query:  316 PPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTK-GGEKLGYETEAFAIYDVMGYVKPPIFTLCV 573
            PPPDL S L   RIVY+GM  VP+VTEL++AE +YLQ+ D ++PIY+YINSTGTT+  GE +G E+E FAIYD +  +K  + T+CV
Sbjct:  118 PPPDLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPIYIYINSTGTTRDDGETVGMESEGFAIYDSLMQLKNEVHTVCV 204          
BLAST of FC931127 vs. ExPASy Swiss-Prot
Match: CLPR1_ARATH (ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic OS=Arabidopsis thaliana GN=CLPR1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.731e-18
Identity = 45/84 (53.57%), Postives = 60/84 (71.43%), Query Frame = 1
Query:  319 PPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGT-TKGGEKLGYETEAFAIYDVMGYVKPPIFTL 567
            PPDL S L   RI YLGM  VP+VTEL++A+F++L Y++  KPIYLYINS GT  +  E +G ETEA+AI D + Y K  ++T+
Sbjct:  169 PPDLPSLLLDARICYLGMPIVPAVTELLVAQFMWLDYDNPTKPIYLYINSPGTQNEKMETVGSETEAYAIADTISYCKSDVYTI 252          
BLAST of FC931127 vs. ExPASy Swiss-Prot
Match: CLPP2_GLOVI (ATP-dependent Clp protease proteolytic subunit 2 OS=Gloeobacter violaceus GN=clpP2 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.081e-16
Identity = 44/95 (46.32%), Postives = 58/95 (61.05%), Query Frame = 1
Query:  289 FTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 573
            ++    +  PPPDL S L   RIVYLG      V EL++A+ LYL+ ED  KPI +YINS G        G+ET AFA+YD M +V+ PI T+C+
Sbjct:   16 YSGDYGFRTPPPDLPSLLLNERIVYLGTPINDVVAELLIAQLLYLESEDNAKPIEIYINSPGVA------GFETSAFAVYDTMRHVRMPIKTICL 104          
BLAST of FC931127 vs. ExPASy Swiss-Prot
Match: CLPP_THEPX (ATP-dependent Clp protease proteolytic subunit OS=Thermoanaerobacter sp. (strain X514) GN=clpP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.615e-12
Identity = 38/83 (45.78%), Postives = 51/83 (61.45%), Query Frame = 1
Query:  325 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 573
            D+ S L K+RIV+LG     +   L++A+ L+L+ ED +K I+LYINS G        G  T  FAIYD M Y+KP + TLCV
Sbjct:   19 DIFSRLLKDRIVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPG--------GSITAGFAIYDTMQYIKPDVVTLCV 93          
BLAST of FC931127 vs. ExPASy Swiss-Prot
Match: CLPP_THEP3 (ATP-dependent Clp protease proteolytic subunit OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=clpP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.615e-12
Identity = 38/83 (45.78%), Postives = 51/83 (61.45%), Query Frame = 1
Query:  325 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 573
            D+ S L K+RIV+LG     +   L++A+ L+L+ ED +K I+LYINS G        G  T  FAIYD M Y+KP + TLCV
Sbjct:   19 DIFSRLLKDRIVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPG--------GSITAGFAIYDTMQYIKPDVVTLCV 93          
BLAST of FC931127 vs. ExPASy Swiss-Prot
Match: CLPP_PELCD (ATP-dependent Clp protease proteolytic subunit OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=clpP PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.598e-12
Identity = 39/83 (46.99%), Postives = 51/83 (61.45%), Query Frame = 1
Query:  325 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 573
            D+ S L K+RI++LG +    V  LI+A+ L+L+ ED EK I+LYINS G        G  T   AIYD M YV+ P+ TLCV
Sbjct:   19 DIFSRLLKDRIIFLGGAVDDQVANLIIAQMLFLESEDPEKEIFLYINSPG--------GVVTAGMAIYDTMQYVRCPVSTLCV 93          
BLAST of FC931127 vs. ExPASy Swiss-Prot
Match: CLPP_GEOUR (ATP-dependent Clp protease proteolytic subunit OS=Geobacter uraniireducens (strain Rf4) GN=clpP PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.598e-12
Identity = 36/83 (43.37%), Postives = 53/83 (63.86%), Query Frame = 1
Query:  325 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 573
            D+ S L K+RIV+LG +   +++ L++A+ L+L+ ED +K I+LYINS G        G  T   AIYD M Y+K P+ T+CV
Sbjct:   18 DIYSRLLKDRIVFLGGAIDDAISNLVIAQLLFLEAEDPDKDIHLYINSPG--------GVVTAGMAIYDTMRYIKAPVSTICV 92          
The following BLAST results are available for this feature:
BLAST of FC931127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CLPR4_ARATH1.702e-6267.38ATP-dependent Clp protease proteolytic subunit-rel... [more]
CLPR_SYNE73.137e-2451.40Putative ATP-dependent Clp protease proteolytic su... [more]
CLPR_SYNY32.034e-2353.47Putative ATP-dependent Clp protease proteolytic su... [more]
CLPR3_ARATH5.009e-2257.47ATP-dependent Clp protease proteolytic subunit-rel... [more]
CLPR1_ARATH5.731e-1853.57ATP-dependent Clp protease proteolytic subunit-rel... [more]
CLPP2_GLOVI1.081e-1646.32ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_THEPX1.615e-1245.78ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THEP31.615e-1245.78ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PELCD3.598e-1246.99ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GEOUR3.598e-1243.37ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionC34101G05EF PostHarvP1 Citrus clementina cDNA clone C34101G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931127 ID=FC931127; Name=FC931127; organism=Citrus clementina; type=EST; length=624bp
GGACAGCCTTTTCACTCTTGCCCTCCACAACTCCGCTACCAAATGGAAGT
AGCCACCGTATCAGCGCCGATCTTCGGGCTCCGCACGCGCATGTTAGCAA
CACCACCACGCACCTCTCCACGAACCGTAAATTGTAACCGAAACCTATCC
ACCAGCTTCATCTCTCCATTCGCAAACGGCAGCGTTTCCTCCGACTTCTC
CGGGCTCAGGCTCCGACCCGATTGCCTCAATCCGGATTCATTCTGCAAGT
CCAAGCCTAGGAGCCCCGTCATCACCATGGTCATTCCTTTTACTAGTGGA
ACTGCATGGGAGCAACCTCCACCAGACTTGGCATCTTATTTGTACAAGAA
TCGAATTGTTTACTTGGGCATGTCTTTTGTTCCTTCTGTCACAGAGCTGA
TTCTTGCTGAGTTCCTTTACCTGCAGTATGAAGATGCTGAGAAGCCCATT
TACTTATACATAAACTCTACGGGAACAACCAAGGGTGGCGAGAAGTTGGG
TTATGAAACTGAGGCTTTTGCGATATATGATGTTATGGGTTATGTCAAGC
CGCCTATATTTACTCTTTGTGTCGGCAATGCTTGGGGTGAGGCAGCGCTT
CTCTTGGGTGCCGGTGCCAAAGGA
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