FC931128

Overview
NameFC931128
Unique NameFC931128
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length514
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931128_ssr267 microsatellite FC931128_ssr267:267..278. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15279 contig Ccv1_Contig15279:1..514. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931128 vs. ExPASy Swiss-Prot
Match: METE_ARATH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Arabidopsis thaliana GN=CIMS PE=1 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 2.055e-77
Identity = 149/164 (90.85%), Postives = 156/164 (95.12%), Query Frame = 3
Query:   21 QDKLVVSTSCSLLHTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEGFFSANAAAQASRKSSPRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEELD 512
            +DKLVVSTSCSLLHTAVDL+NE KLDDEIKSWLAFAAQKVVEVNALAKALAGQKDE  FSANAAA ASR+SSPRVTNE VQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQT+ELRRVRREYKAKK+SEE+YV +IKEEI KVV LQEELD
Sbjct:  319 KDKLVVSTSCSLLHTAVDLINETKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEALFSANAAALASRRSSPRVTNEGVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTVELRRVRREYKAKKVSEEDYVKAIKEEIKKVVDLQEELD 482          
BLAST of FC931128 vs. ExPASy Swiss-Prot
Match: METE_MESCR (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mesembryanthemum crystallinum GN=METE PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 3.506e-77
Identity = 148/164 (90.24%), Postives = 156/164 (95.12%), Query Frame = 3
Query:   21 QDKLVVSTSCSLLHTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEGFFSANAAAQASRKSSPRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEELD 512
            +DKLVVSTSCS LHTAVDL+NE KLDDEIKSWLAFAAQKV+EVNALAKAL+GQKDE FFSANAAA ASRKSSPRVTNE VQKAA ALKGSDHRRAT VS+RLDAQQKKLNLPILPTTTIGSFPQT+ELRRVRREYKAKKISEEEYV +IKEEI+KVVKLQEELD
Sbjct:  319 KDKLVVSTSCSFLHTAVDLINETKLDDEIKSWLAFAAQKVLEVNALAKALSGQKDEAFFSANAAALASRKSSPRVTNEAVQKAATALKGSDHRRATTVSSRLDAQQKKLNLPILPTTTIGSFPQTVELRRVRREYKAKKISEEEYVKAIKEEISKVVKLQEELD 482          
BLAST of FC931128 vs. ExPASy Swiss-Prot
Match: METE_CATRO (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Catharanthus roseus GN=METE PE=2 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 1.740e-76
Identity = 147/164 (89.63%), Postives = 157/164 (95.73%), Query Frame = 3
Query:   21 QDKLVVSTSCSLLHTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEGFFSANAAAQASRKSSPRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEELD 512
            +DKLVVSTSCSLLHTAVDLVNE KLD EIKSWLAFAAQKVVEVNALAKALAG+KDE FFS NAAAQASRKSSPRVTN+ VQKAAAAL+GSDHRRAT VSARLDAQQKKLNLP+LPTTTIGSFPQT+ELRRVRREYKAKKISE++YV +IKEEI+KVVKLQEELD
Sbjct:  319 KDKLVVSTSCSLLHTAVDLVNEPKLDKEIKSWLAFAAQKVVEVNALAKALAGEKDEAFFSENAAAQASRKSSPRVTNQAVQKAAAALRGSDHRRATTVSARLDAQQKKLNLPVLPTTTIGSFPQTLELRRVRREYKAKKISEDDYVKAIKEEISKVVKLQEELD 482          
BLAST of FC931128 vs. ExPASy Swiss-Prot
Match: METE_SOLSC (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Solenostemon scutellarioides GN=MET PE=1 SV=2)

HSP 1 Score: 275.018 bits (702), Expect = 1.379e-73
Identity = 143/164 (87.20%), Postives = 151/164 (92.07%), Query Frame = 3
Query:   21 QDKLVVSTSCSLLHTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEGFFSANAAAQASRKSSPRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEELD 512
            +DKLVVSTS SLLHTAVDLVNE KLD EIKSWLAFAAQK+VEVNALAKAL G KDE FFS NAAAQASRKSSPRV NE VQKAAAAL+GS+HRR TNVSARLDAQQKKLNLPILPTTTIGSFPQT+ELRRVRRE+K  +ISEEEYV +IKEEINKVVKLQEELD
Sbjct:  318 KDKLVVSTSSSLLHTAVDLVNEPKLDQEIKSWLAFAAQKIVEVNALAKALTGHKDEAFFSPNAAAQASRKSSPRVNNEAVQKAAAALRGSEHRRVTNVSARLDAQQKKLNLPILPTTTIGSFPQTVELRRVRREFKPTRISEEEYVKAIKEEINKVVKLQEELD 481          
BLAST of FC931128 vs. ExPASy Swiss-Prot
Match: METE_RALSO (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Ralstonia solanacearum GN=metE PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 6.260e-34
Identity = 78/164 (47.56%), Postives = 107/164 (65.24%), Query Frame = 3
Query:   24 DKLVVSTSCSLLHTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEGF--FSANAAAQASRKSSPRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEEL 509
            ++L ++ SCSLLH  VDL  E +LDDE+K WLAFA QK+ E+  L +A+   +D      + +AAA ASR +S RV N+ V+K AAA++  D  RA     R  AQQ +LNLP+LPTTTIGSFPQT E+R+ R +YK  ++    Y+  ++ EI  VV+ QE L
Sbjct:  313 ERLWLAPSCSLLHVPVDLAAETRLDDELKGWLAFARQKLDELAVLKRAVIDGRDAAHAALAGSAAAIASRAASRRVHNDSVKKRAAAIRAQDAERAAPYPVRAAAQQARLNLPLLPTTTIGSFPQTAEIRQARAQYKRGELQALTYLERMRAEIADVVQRQEAL 476          
BLAST of FC931128 vs. ExPASy Swiss-Prot
Match: METE_BURA4 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia ambifaria (strain MC40-6) GN=metE PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 8.176e-34
Identity = 78/165 (47.27%), Postives = 108/165 (65.45%), Query Frame = 3
Query:   24 DKLVVSTSCSLLHTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDE--GFFSANAAAQASRKSSPRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEELD 512
            ++L ++ SCSLLH  VDL +E KLD EI+SWLAFA QK+ E+N LA AL   +D+     +ANAAA  SR+ SPRV N  V+ A A +      RA+  + R   Q  +LNLP  PTTTIGSFPQT ++R+ RR++K+  + E  Y A+++ EI + V+ QE L+
Sbjct:  321 ERLWIAPSCSLLHVPVDLASEQKLDPEIRSWLAFALQKLDELNVLATALNEGRDKVADALAANAAAIDSRRRSPRVNNPAVKAALARIDAQLGNRASPYTQRAPKQSARLNLPAFPTTTIGSFPQTADIRQARRQFKSGALDEAGYRAAMQAEIERSVREQESLE 485          
BLAST of FC931128 vs. ExPASy Swiss-Prot
Match: METE_RALPJ (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Ralstonia pickettii (strain 12J) GN=metE PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.379e-33
Identity = 80/164 (48.78%), Postives = 104/164 (63.41%), Query Frame = 3
Query:   24 DKLVVSTSCSLLHTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKD--EGFFSANAAAQASRKSSPRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEEL 509
            D+L ++ SCSLLH  VDL  E KLDDE+K WLAFA QK+ E+  + +AL       +G    N  A ASR  S RV N  V+K  AA++ +D  RA    AR DAQQ +LNLP+LPTTTIGSFPQT E+RR R ++K   +   +Y+  ++ EI  VV+ QE L
Sbjct:  316 DRLWIAPSCSLLHVPVDLSAETKLDDELKGWLAFARQKLDELAVIKRALVEGPAAVQGELDDNRIAIASRTQSRRVHNAGVKKRVAAIRAADAVRAAPYPARADAQQARLNLPLLPTTTIGSFPQTPEIRRARAQHKRGDLPALDYLQRMRTEIADVVRRQEAL 479          
BLAST of FC931128 vs. ExPASy Swiss-Prot
Match: METE_PSEE4 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas entomophila (strain L48) GN=metE PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.107e-33
Identity = 79/168 (47.02%), Postives = 105/168 (62.50%), Query Frame = 3
Query:   15 RWQDKLVVSTSCSLLHTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEGFFSANA---AAQASRKSSPRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEEL 509
            R  D+L V+ SCSLLH+ VDL  E+KLDDE+KSWLAFA QK  EV  LAKA+   +     +  A   A Q  R +SPR+    VQ   AA+K +D +RAT    R+  Q+  L+LP  PTTTIGSFPQT  +R  R+ +K  K++E +YV ++  EI   V++QE L
Sbjct:  316 RLGDRLWVAPSCSLLHSPVDLAREDKLDDELKSWLAFAVQKCQEVALLAKAINQPEAADVVTVLAQSRAVQHRRATSPRIHKPAVQARVAAIKPADSQRATAFEQRIAKQRAGLDLPAFPTTTIGSFPQTSAIRLARQSFKQGKLTEADYVEAMHSEIRHAVEIQENL 483          
BLAST of FC931128 vs. ExPASy Swiss-Prot
Match: METE_BURCM (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=metE PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 9.039e-33
Identity = 78/164 (47.56%), Postives = 104/164 (63.41%), Query Frame = 3
Query:   24 DKLVVSTSCSLLHTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDE--GFFSANAAAQASRKSSPRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEEL 509
            D+L ++ SCSLLH  VDL +E KLD EI+SWLAFA QK+ E+  LA AL   +D+     +ANAAA  SR+ SPRV N  V+ A A +      RA+  + R   Q  +LNLP  PTTTIGSFPQT ++R  R ++KA  + E  Y A+++ EI + V+ QE L
Sbjct:  321 DRLWIAPSCSLLHVPVDLASEEKLDAEIRSWLAFALQKLDELKVLATALNQGRDKVADALAANAAAIDSRRRSPRVNNPAVKAALARIDAQLGNRASPYTQRAPKQSARLNLPAFPTTTIGSFPQTADIRHARSQFKAGALDEAGYRAAMQAEIERSVREQESL 484          
BLAST of FC931128 vs. ExPASy Swiss-Prot
Match: METE_BURCJ (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=metE PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 9.039e-33
Identity = 79/165 (47.88%), Postives = 103/165 (62.42%), Query Frame = 3
Query:   24 DKLVVSTSCSLLHTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDE--GFFSANAAAQASRKSSPRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEELD 512
            D+L ++ SCSLLH  VDL NE KLD EI+SWLAFA QK+ E+  LA AL   +D      +ANAAA  SR+ SPRV N  V+ A A +      RA+  + R   Q  +LNLP  PTTTIGSFPQT E+R+ R  +KA  + E  Y  +++ EI + V+ QE L+
Sbjct:  321 DRLWLAPSCSLLHVPVDLANEAKLDAEIRSWLAFALQKLDELKVLATALNEGRDTVADALAANAAAIESRRRSPRVNNPAVKAAIARIDARLGNRASPYAQRASKQSARLNLPAFPTTTIGSFPQTAEIRQARSRFKAGTLDEAGYRTAMQAEIERSVREQESLE 485          
The following BLAST results are available for this feature:
BLAST of FC931128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 268
Match NameE-valueIdentityDescription
METE_ARATH2.055e-7790.855-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_MESCR3.506e-7790.245-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CATRO1.740e-7689.635-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SOLSC1.379e-7387.205-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_RALSO6.260e-3447.565-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURA48.176e-3447.275-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_RALPJ2.379e-3348.785-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PSEE43.107e-3347.025-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURCM9.039e-3347.565-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURCJ9.039e-3347.885-methyltetrahydropteroyltriglutamate--homocystein... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34101G07EF PostHarvP1 Citrus clementina cDNA clone C34101G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931128 ID=FC931128; Name=FC931128; organism=Citrus clementina; type=EST; length=514bp
GGGCTTGAGGGTGTCGTTGGCAAGACAAGCTTGTGGTCTCCACCTCCTGC
TCACTTCTTCACACTGCTGTTGATCTTGTTAATGAGAACAAACTCGACGA
TGAAATCAAGTCATGGCTGGCATTTGCTGCCCAGAAAGTTGTTGAAGTGA
ATGCATTGGCCAAGGCTTTGGCTGGCCAAAAGGATGAGGGATTCTTCTCT
GCCAATGCTGCAGCTCAGGCTTCAAGAAAGTCCTCCCCGAGAGTGACCAA
TGAGAGAGTTCAAAAGGCTGCTGCTGCTTTGAAGGGATCAGACCACAGAC
GTGCTACAAACGTTAGTGCTAGATTGGATGCTCAACAGAAGAAGCTCAAT
CTTCCAATCCTCCCAACCACCACAATTGGATCCTTCCCACAAACCATTGA
ACTTAGGAGAGTCCGCCGTGAATACAAGGCTAAGAAGATTTCTGAGGAAG
AATATGTTGCTTCCATCAAGGAGGAAATCAACAAGGTTGTCAAACTCCAA
GAAGAGCTTGATAT
back to top