FC931138

Overview
NameFC931138
Unique NameFC931138
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931138_ssr23 microsatellite FC931138_ssr23:23..48. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig475 contig Ccv1_Contig475:27..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB3_ARATH (V-type proton ATPase subunit B3 OS=Arabidopsis thaliana GN=VHA-B3 PE=2 SV=1)

HSP 1 Score: 363.229 bits (931), Expect = 7.137e-100
Identity = 181/194 (93.30%), Postives = 189/194 (97.42%), Query Frame = 2
Query:  104 VAQNNVDMEEGTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNL 685
            + + ++DMEEGTLE+ MEYRTV+GVAGPLVILDKVKGPKY EIVNIRLGDG+ RRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKT+NL
Sbjct:    1 MVETSIDMEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGSTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTENL 194          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB1_GOSHI (V-type proton ATPase subunit B 1 OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 363.229 bits (931), Expect = 7.137e-100
Identity = 183/196 (93.37%), Postives = 189/196 (96.43%), Query Frame = 2
Query:   98 MGVAQNNVDMEEGTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNL 685
            MG+A+N   MEEGTLE+ MEYRTV+GVAGPLVILDKVKGPKY EIVNIRLGDGT RRGQVLEVDGEKAVVQVFEGTSGIDNK+TTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKT +L
Sbjct:    1 MGMAENTNGMEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTGDL 196          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB2_ARATH (V-type proton ATPase subunit B2 OS=Arabidopsis thaliana GN=VHA-B2 PE=2 SV=1)

HSP 1 Score: 362.844 bits (930), Expect = 9.321e-100
Identity = 183/196 (93.37%), Postives = 191/196 (97.45%), Query Frame = 2
Query:   98 MGVAQNNVDMEEGTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNL 685
            MG A+NN++ME GTLE+ MEYRTV+GVAGPLVIL+KVKGPKY EIVNIRLGDGT RRGQVLEVDGEKAVVQVFEGTSGIDNK+TTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEK+DNL
Sbjct:    1 MGAAENNLEME-GTLEIGMEYRTVSGVAGPLVILEKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNL 195          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB1_HORVU (V-type proton ATPase subunit B 1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 359.377 bits (921), Expect = 1.031e-98
Identity = 180/192 (93.75%), Postives = 185/192 (96.35%), Query Frame = 2
Query:   98 MGVAQNNVDMEEGTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEK 673
            MG+ +   DMEEGTLE+ MEYRTV+GVAGPLVILDKVKGPKY EIVNIRLGDGT RRGQVLEVDGEKAVVQVFEGTSGIDNK+TTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEK
Sbjct:    1 MGLVKEGADMEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEK 192          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB1_ARATH (V-type proton ATPase subunit B1 OS=Arabidopsis thaliana GN=VHA-B1 PE=2 SV=2)

HSP 1 Score: 358.221 bits (918), Expect = 2.296e-98
Identity = 180/191 (94.24%), Postives = 187/191 (97.91%), Query Frame = 2
Query:  113 NNVDMEEGTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNL 685
            N++D+EEGTLE+ MEYRTV+GVAGPLVILDKVKGPKY EIVNIRLGDG+ RRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKT +L
Sbjct:    4 NDLDIEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGSTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTVDL 194          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB2_HORVU (V-type proton ATPase subunit B 2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 351.673 bits (901), Expect = 2.149e-96
Identity = 176/185 (95.14%), Postives = 182/185 (98.38%), Query Frame = 2
Query:  122 DMEEGTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKT 676
            +MEEGTLE+ MEYRTV+GVAGPLVILDKVKGPKY EIVNIRLGDGT RRGQVLEVDGEKAVVQVFEGTSGIDNK+TTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLE++
Sbjct:    4 EMEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEQS 188          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB1_ACEAT (V-type proton ATPase subunit B 1 OS=Acetabularia acetabulum PE=2 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 2.387e-79
Identity = 146/174 (83.91%), Postives = 160/174 (91.95%), Query Frame = 2
Query:  143 EVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKR 664
            E  +EYRTV GV+GPLV+++ VK PK+ EIVNIRLG+GT RRGQVLEVDG +AVVQVFEGTSGIDN+ TT+QFTGEVL TPVS DMLGR+FNGSGKPID GPP+L EAYLDI GSSINPSERTYPEEMIQTG+STIDVMNSIARGQKIPLFSAAGLPHN+IAAQICRQAGLVKR
Sbjct:   21 EPRIEYRTVGGVSGPLVVVELVKRPKFAEIVNIRLGNGTSRRGQVLEVDGNRAVVQVFEGTSGIDNRNTTLQFTGEVLSTPVSKDMLGRVFNGSGKPIDGGPPVLAEAYLDIQGSSINPSERTYPEEMIQTGVSTIDVMNSIARGQKIPLFSAAGLPHNDIAAQICRQAGLVKR 194          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB2_ACEAT (V-type proton ATPase subunit B 2 OS=Acetabularia acetabulum PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 6.500e-77
Identity = 142/174 (81.61%), Postives = 158/174 (90.80%), Query Frame = 2
Query:  143 EVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKR 664
            E  +EYRTV GV+GPLV+++ VK PK+ EIVNIRLG+GT RRGQVLEVDG +AVVQVFEGTSGIDN+ TT+QFTGEVL TPVS DMLGR+FNGSGKPID GP +L EAYLDI GSSINPSERTYPEEM QTG+STIDVMNSIARGQKIPLFSAAGLPHN+IAAQICRQAGLV++
Sbjct:   21 EPRIEYRTVGGVSGPLVVVELVKRPKFAEIVNIRLGNGTSRRGQVLEVDGNRAVVQVFEGTSGIDNRNTTLQFTGEVLSTPVSKDMLGRVFNGSGKPIDGGPTVLAEAYLDIQGSSINPSERTYPEEMSQTGVSTIDVMNSIARGQKIPLFSAAGLPHNDIAAQICRQAGLVRQ 194          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB_CYACA (V-type proton ATPase subunit B OS=Cyanidium caldarium PE=3 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.164e-72
Identity = 130/169 (76.92%), Postives = 148/169 (87.57%), Query Frame = 2
Query:  152 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLV 658
            +EYRTV+ V GPL+IL  VK P++ EIVN+ LGDG++RRGQVLE++ +KAVVQ+FEGT+GIDNK T  QFTGE+LKTPVSLDMLGR+FNGSGKPID GPPILPEAYLDI G  INP  RTYPEEM +TGIS+IDVMNSIARGQKIPLFS AGLPHNE+AAQICRQ  LV
Sbjct:   21 LEYRTVSAVNGPLIILQNVKSPRFAEIVNVTLGDGSVRRGQVLEINQDKAVVQIFEGTTGIDNKKTVCQFTGEILKTPVSLDMLGRVFNGSGKPIDGGPPILPEAYLDIQGQPINPQSRTYPEEMFETGISSIDVMNSIARGQKIPLFSGAGLPHNEVAAQICRQVCLV 189          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB_DROME (V-type proton ATPase subunit B OS=Drosophila melanogaster GN=Vha55 PE=1 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 3.455e-70
Identity = 132/170 (77.65%), Postives = 146/170 (85.88%), Query Frame = 2
Query:  152 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVK 661
            + Y+TV+GV GPLVILD+VK PK+ EIV +RL DGT+R GQVLEV G KAVVQVFEGTSGID K T  +FTG++L+TPVS DMLGR+FNGSGKPID GPPIL E +LDI G  INP  R YPEEMIQTGIS IDVMNSIARGQKIP+FSAAGLPHNEIAAQICRQAGLVK
Sbjct:   24 LTYKTVSGVNGPLVILDEVKFPKFAEIVQLRLADGTVRSGQVLEVSGSKAVVQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVK 193          
The following BLAST results are available for this feature:
BLAST of FC931138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
VATB3_ARATH7.137e-10093.30V-type proton ATPase subunit B3 OS=Arabidopsis tha... [more]
VATB1_GOSHI7.137e-10093.37V-type proton ATPase subunit B 1 OS=Gossypium hirs... [more]
VATB2_ARATH9.321e-10093.37V-type proton ATPase subunit B2 OS=Arabidopsis tha... [more]
VATB1_HORVU1.031e-9893.75V-type proton ATPase subunit B 1 OS=Hordeum vulgar... [more]
VATB1_ARATH2.296e-9894.24V-type proton ATPase subunit B1 OS=Arabidopsis tha... [more]
VATB2_HORVU2.149e-9695.14V-type proton ATPase subunit B 2 OS=Hordeum vulgar... [more]
VATB1_ACEAT2.387e-7983.91V-type proton ATPase subunit B 1 OS=Acetabularia a... [more]
VATB2_ACEAT6.500e-7781.61V-type proton ATPase subunit B 2 OS=Acetabularia a... [more]
VATB_CYACA2.164e-7276.92V-type proton ATPase subunit B OS=Cyanidium caldar... [more]
VATB_DROME3.455e-7077.65V-type proton ATPase subunit B OS=Drosophila melan... [more]

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Properties
Property NameValue
Genbank descriptionC34101H05EF PostHarvP1 Citrus clementina cDNA clone C34101H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931138 ID=FC931138; Name=FC931138; organism=Citrus clementina; type=EST; length=686bp
GCATCTCTCATTGCCCCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCA
CTCACAGAGATCACAAGAAAGACCAAAAAAAAAGAAAAAAATTGAAAATG
GGTGTGGCACAAAACAATGTTGACATGGAGGAGGGTACTCTGGAAGTCGC
CATGGAGTACAGAACGGTCACCGGAGTTGCTGGGCCTCTAGTTATCCTTG
ATAAAGTCAAGGGACCCAAATATTATGAGATTGTCAATATTCGGTTGGGA
GATGGAACAATGCGACGTGGTCAGGTCCTAGAAGTTGATGGAGAGAAAGC
TGTTGTTCAGGTCTTTGAAGGGACATCCGGAATTGACAATAAATTTACAA
CTGTGCAGTTTACAGGGGAGGTTCTGAAGACTCCTGTCTCATTGGATATG
CTTGGGCGCATTTTTAATGGTTCTGGGAAACCCATTGATAATGGTCCCCC
AATTTTGCCAGAGGCTTACTTGGATATATCCGGAAGTTCTATCAACCCTA
GTGAGAGAACCTATCCTGAAGAGATGATACAGACAGGGATTTCTACCATT
GATGTGATGAACTCCATTGCTAGAGGACAAAAGATCCCTCTTTTTTCTGC
TGCCGGTCTTCCCCATAATGAAATTGCTGCTCAGATTTGTCGCCAGGCTG
GTTTAGTCAAGCGATTGGAGAAGACTGATAATCTTC
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