FC931139

Overview
NameFC931139
Unique NameFC931139
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB1_PEA (Aspartate carbamoyltransferase 1, chloroplastic OS=Pisum sativum GN=PYRB1 PE=2 SV=1)

HSP 1 Score: 357.451 bits (916), Expect = 3.882e-98
Identity = 181/208 (87.02%), Postives = 195/208 (93.75%), Query Frame = 3
Query:   48 AIETQSTPSFTIGKKFQLDDVIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGVVK 671
            A++ +S P F++G+KFQLDDVIEAQQFDR+ L+AIFEVAR ME I  NS GSQ+LKGYLMATLFYEPSTRTRLSFESAMKRLGG+VLTTENAREFS AAKGETLEDTIRTVEGYSDIIV+RHFESGAARRAA TA IPVINAGDGPGQHP+QALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKY+DVK+YFVSP VVK
Sbjct:   63 ALQVESAPLFSVGQKFQLDDVIEAQQFDRETLSAIFEVARSMENIRGNSSGSQMLKGYLMATLFYEPSTRTRLSFESAMKRLGGDVLTTENAREFSSAAKGETLEDTIRTVEGYSDIIVLRHFESGAARRAAATANIPVINAGDGPGQHPSQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYRDVKLYFVSPNVVK 270          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB2_PEA (Aspartate carbamoyltransferase 2, chloroplastic OS=Pisum sativum GN=PYRB2 PE=2 SV=1)

HSP 1 Score: 357.066 bits (915), Expect = 5.070e-98
Identity = 186/223 (83.41%), Postives = 201/223 (90.13%), Query Frame = 3
Query:    3 KQTQQLPSRNSIQCWAIETQSTPSFTIGKKFQLDDVIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGVVK 671
            K+T+Q   R+ I C          F+ G+KFQLDDV+EAQQFDRDILNAIFEVAR+MEKIE+NSP SQILKGYLMATLFYEPSTRTRLSFESAM+RLGGEVLTTENAREFS AAKGETLEDTIRTVEGYSD+IV+RHFESGAARRAAT A IP++NAGDGPGQHP+QALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSL YLLAKY+DVKIYFVSP VVK
Sbjct:   60 KKTRQ---RDGIHC----------FSEGQKFQLDDVVEAQQFDRDILNAIFEVARDMEKIERNSPESQILKGYLMATLFYEPSTRTRLSFESAMRRLGGEVLTTENAREFSSAAKGETLEDTIRTVEGYSDLIVLRHFESGAARRAATIAGIPIVNAGDGPGQHPSQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLTYLLAKYKDVKIYFVSPEVVK 269          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB3_PEA (Aspartate carbamoyltransferase 3, chloroplastic OS=Pisum sativum GN=PYRB3 PE=2 SV=1)

HSP 1 Score: 354.369 bits (908), Expect = 3.286e-97
Identity = 179/199 (89.95%), Postives = 191/199 (95.98%), Query Frame = 3
Query:   75 FTIGKKFQLDDVIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGVVK 671
            F+ G+KFQLDDVIEAQQFDRDILNAIFE+AR+ME IE+NSP SQILKGYLMATLFYEPSTRTRLSFESAM+RLGGEVLTTENAREFS AAKGETLEDTIRTVEGYSD+IV+RHFESGAARRAA  A IP++NAGDGPGQHP+QALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKY+DVKIYFVSP VVK
Sbjct:   77 FSEGQKFQLDDVIEAQQFDRDILNAIFEIARDMENIERNSPESQILKGYLMATLFYEPSTRTRLSFESAMRRLGGEVLTTENAREFSSAAKGETLEDTIRTVEGYSDLIVLRHFESGAARRAAAIAGIPIVNAGDGPGQHPSQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYKDVKIYFVSPEVVK 275          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_ARATH (Aspartate carbamoyltransferase, chloroplastic OS=Arabidopsis thaliana GN=PYRB PE=2 SV=2)

HSP 1 Score: 333.954 bits (855), Expect = 4.596e-91
Identity = 170/195 (87.18%), Postives = 184/195 (94.36%), Query Frame = 3
Query:   87 KKFQLDDVIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGVVK 671
            KKF+L DVIE +QFDR++L+AIF+VAREMEKIEK+S  S+ILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFS AAKGETLEDTIRTVEGYSDIIVMRHFESGAAR+AA TA IPVINAGDGPG+HPTQALLDVYTI+ EIGKLDGI V LVGDLANGRTVRSLAYLLAK++DVKIYFVSP +VK
Sbjct:   80 KKFELSDVIEGKQFDREMLSAIFDVAREMEKIEKSSSQSEILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSSAAKGETLEDTIRTVEGYSDIIVMRHFESGAARKAAATANIPVINAGDGPGEHPTQALLDVYTIQSEIGKLDGISVALVGDLANGRTVRSLAYLLAKFKDVKIYFVSPEIVK 274          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_METJA (Aspartate carbamoyltransferase OS=Methanocaldococcus jannaschii GN=pyrB PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 7.932e-51
Identity = 100/184 (54.35%), Postives = 137/184 (74.46%), Query Frame = 3
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            +I  +   ++ +  I + AR+ME++       ++L+G ++AT+FYEPSTRTRLSFE+AMKRLGGEV+T  + +  S  AKGE+L DTIR + GY+DIIV+RH   GAAR A+  + +P+INAGDG  QHPTQ LLD+YTI REIG++DGIK+  VGDL  GRTV SL Y L+ +++V++YFVSP
Sbjct:    4 LISMKDIGKEEILEILDEARKMEELLNTKRPLKLLEGKILATVFYEPSTRTRLSFETAMKRLGGEVITMTDLKSSS-VAKGESLIDTIRVISGYADIIVLRHPSEGAARLASEYSQVPIINAGDGSNQHPTQTLLDLYTIMREIGRIDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSP 186          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_PYRFU (Aspartate carbamoyltransferase OS=Pyrococcus furiosus GN=pyrB PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 8.769e-50
Identity = 104/189 (55.03%), Postives = 133/189 (70.37%), Query Frame = 3
Query:  105 DVIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGVVK 671
            DVI  + F ++ +  +   A  +EK  K     +  +G ++ATLF+EPSTRTRLSFESAM RLGG V+    A   S   KGE+L DTI+TVE YSD+IV+RH + GAAR AA  A IPVINAGDG  QHPTQ LLD+YTI +E GK+DG+K+GL+GDL  GRTV SLA  LA Y DV++Y +SP +++
Sbjct:    7 DVISIRDFSKEDIEIVLSTAERLEKELKEKGQLEYARGKILATLFFEPSTRTRLSFESAMHRLGGAVIGFAEASTSS-VKKGESLADTIKTVEQYSDVIVIRHPKEGAARLAAEVAEIPVINAGDGSNQHPTQTLLDLYTIRKEFGKIDGLKIGLLGDLKYGRTVHSLAEALA-YYDVELYLISPELLR 193          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_PYRHO (Aspartate carbamoyltransferase OS=Pyrococcus horikoshii GN=pyrB PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.145e-49
Identity = 104/189 (55.03%), Postives = 133/189 (70.37%), Query Frame = 3
Query:  105 DVIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGVVK 671
            DVI  + F ++ +  +   A  +EK  K     +  KG ++ATLF+EPSTRTRLSFESAM RLGG V+    A   S   KGE+L DTI+TVE YSD+IV+RH + GAAR AA  A IPVINAGDG  QHPTQ LLD+YTI++E G +DG+K+GL+GDL  GRTV SLA  LA Y DV++Y +SP +++
Sbjct:    7 DVISIRDFSKEDIEVVLSTAERLEKEMKEKGQLEYAKGKILATLFFEPSTRTRLSFESAMHRLGGSVIGFAEASTSS-VKKGESLRDTIKTVEQYSDVIVIRHPKEGAARLAAEVADIPVINAGDGSNQHPTQTLLDLYTIKKEFGTIDGLKIGLLGDLKYGRTVHSLAEALAFY-DVELYLISPELLR 193          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_THEGJ (Aspartate carbamoyltransferase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=pyrB PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.266e-48
Identity = 102/189 (53.97%), Postives = 133/189 (70.37%), Query Frame = 3
Query:  105 DVIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGVVK 671
            DVI  + F +  +  + +VA  +E+  +     +  +G ++ATLF+EPSTRTRLSFESAM RLGG V+   +A   S   KGE+L DTIRTVE YSD+IV+RH   GAAR AA  A +PVINAGDG  QHPTQ LLD+YTI+R  GK+DG+ +GL+GDL  GRTV SLA  LA Y DV++Y +SP +++
Sbjct:    7 DVISIRDFSKSDIEFVLKVAERLEEELREKGSLEYARGKILATLFFEPSTRTRLSFESAMHRLGGSVIGFSSASSTS-VRKGESLADTIRTVEQYSDVIVIRHPMEGAARLAAEVAEVPVINAGDGSNQHPTQTLLDLYTIKRAFGKIDGLTIGLLGDLKYGRTVHSLAEALAFY-DVELYLISPELLR 193          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_PYRAB (Aspartate carbamoyltransferase OS=Pyrococcus abyssi GN=pyrB PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.821e-48
Identity = 100/189 (52.91%), Postives = 132/189 (69.84%), Query Frame = 3
Query:  105 DVIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGVVK 671
            DVI  + F ++ +  +   A  +E+  K     +  KG ++ATLF+EPSTRTRLSFESAM RLGG V+    A   S   KGE+L DTI+TVE Y D+IV+RH + GAAR AA  A +PVINAGDG  QHPTQ LLD+YTI++E G++DG+K+GL+GDL  GRTV SLA  L  Y DV++Y +SP +++
Sbjct:    7 DVISIRDFSKEDIETVLATAERLERELKEKGQLEYAKGKILATLFFEPSTRTRLSFESAMHRLGGAVIGFAEASTSS-VKKGESLRDTIKTVEQYCDVIVIRHPKEGAARLAAEVAEVPVINAGDGSNQHPTQTLLDLYTIKKEFGRIDGLKIGLLGDLKYGRTVHSLAEALTFY-DVELYLISPELLR 193          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_THEON (Aspartate carbamoyltransferase OS=Thermococcus onnurineus (strain NA1) GN=pyrB PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.684e-48
Identity = 100/189 (52.91%), Postives = 134/189 (70.90%), Query Frame = 3
Query:  105 DVIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGVVK 671
            DVI  + F ++ +  + ++A  +E+        +  +G ++ATLF+EPSTRTRLSFESAM RLGG V+   +A   S   KGE+L DTI+TVE YSD+IV+RH   GAAR AA  A IPVINAGDG  QHPTQ LLD+YTI+R  G++DG+++GL+GDL  GRTV SLA  LA Y DV++Y +SP +++
Sbjct:    7 DVISVRDFSKEDIEFVLKIAERLEERLNKKGHLEYARGKILATLFFEPSTRTRLSFESAMHRLGGSVIGFSSAASTS-VKKGESLADTIKTVEQYSDVIVIRHPMEGAARLAAEVAEIPVINAGDGSNQHPTQTLLDLYTIKRAFGRIDGLRIGLLGDLKYGRTVHSLAEALAFY-DVELYLISPELLR 193          
The following BLAST results are available for this feature:
BLAST of FC931139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PYRB1_PEA3.882e-9887.02Aspartate carbamoyltransferase 1, chloroplastic OS... [more]
PYRB2_PEA5.070e-9883.41Aspartate carbamoyltransferase 2, chloroplastic OS... [more]
PYRB3_PEA3.286e-9789.95Aspartate carbamoyltransferase 3, chloroplastic OS... [more]
PYRB_ARATH4.596e-9187.18Aspartate carbamoyltransferase, chloroplastic OS=A... [more]
PYRB_METJA7.932e-5154.35Aspartate carbamoyltransferase OS=Methanocaldococc... [more]
PYRB_PYRFU8.769e-5055.03Aspartate carbamoyltransferase OS=Pyrococcus furio... [more]
PYRB_PYRHO1.145e-4955.03Aspartate carbamoyltransferase OS=Pyrococcus horik... [more]
PYRB_THEGJ1.266e-4853.97Aspartate carbamoyltransferase OS=Thermococcus gam... [more]
PYRB_PYRAB2.821e-4852.91Aspartate carbamoyltransferase OS=Pyrococcus abyss... [more]
PYRB_THEON3.684e-4852.91Aspartate carbamoyltransferase OS=Thermococcus onn... [more]

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Properties
Property NameValue
Genbank descriptionC34101H07EF PostHarvP1 Citrus clementina cDNA clone C34101H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931139 ID=FC931139; Name=FC931139; organism=Citrus clementina; type=EST; length=685bp
GGAAGCAGACCCAGCAGTTGCCCTCAAGGAATTCAATCCAGTGCTGGGCA
ATAGAAACTCAAAGTACCCCCTCATTTACCATCGGGAAGAAGTTTCAACT
TGATGACGTGATTGAAGCACAACAGTTTGATAGAGACATTCTTAATGCTA
TATTTGAAGTTGCGCGTGAAATGGAGAAGATAGAAAAGAATTCACCTGGA
AGCCAAATTCTTAAAGGTTACCTAATGGCTACTCTGTTTTATGAGCCCTC
TACTAGAACTAGGCTTTCATTTGAGTCTGCTATGAAGCGGTTAGGTGGGG
AAGTTTTGACTACAGAAAATGCTAGGGAATTTTCATTTGCAGCAAAGGGG
GAGACACTGGAAGACACTATAAGGACTGTTGAGGGGTACTCTGATATAAT
AGTTATGCGGCATTTTGAAAGCGGAGCTGCCAGAAGAGCTGCAACAACAG
CTGTCATTCCTGTCATAAATGCTGGAGATGGTCCTGGACAGCATCCAACT
CAGGCTCTTTTAGATGTCTATACTATTGAAAGAGAGATAGGCAAGCTGGA
TGGCATTAAAGTTGGGCTTGTGGGAGATCTAGCTAATGGAAGAACAGTCC
GCTCGCTTGCTTACTTGCTTGCCAAATACCAAGATGTGAAGATCTACTTT
GTCTCTCCTGGTGTAGTAAAATGAAGGATGATATC
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