FC931147

Overview
NameFC931147
Unique NameFC931147
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15321 contig Ccv1_Contig15321:3..688. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931147 vs. ExPASy Swiss-Prot
Match: R10A3_ARATH (60S ribosomal protein L10a-3 OS=Arabidopsis thaliana GN=RPL10AC PE=2 SV=1)

HSP 1 Score: 343.969 bits (881), Expect = 4.481e-94
Identity = 174/208 (83.65%), Postives = 184/208 (88.46%), Query Frame = 1
Query:   61 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDRRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVXMSVNFLVSLLKKNWQNVRCLYLKS 684
            MSKLQS+A+REAISSI+ + KET  RNFTETIELQIGLKNYDPQKD+RFSGSVKLPH+PRPKMK+CMLGDAQHVEEAEKIGL+ MDVE                  +HAFLASESVIKQIPRLLGPGLNKAGKFPTLV+HQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNV MSVNFLVSLLKKNWQNVRCLYLKS
Sbjct:    1 MSKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPRPKMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKS 208          
BLAST of FC931147 vs. ExPASy Swiss-Prot
Match: R10A1_ARATH (60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=2 SV=1)

HSP 1 Score: 333.183 bits (853), Expect = 7.909e-91
Identity = 172/208 (82.69%), Postives = 181/208 (87.02%), Query Frame = 1
Query:   61 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDRRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVXMSVNFLVSLLKKNWQNVRCLYLKS 684
            MSKLQS+A+REAI++I   S E  KRNF ETIELQIGLKNYDPQKD+RFSGSVKLPHIPRPKMK+CMLGDAQHVEEAEK+GL+ MDVE                  YHAFLASESVIKQIPRLLGPGLNKAGKFPTLV+HQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNV MSVNFLVSLLKKNWQNVRCLYLKS
Sbjct:    1 MSKLQSEAVREAITTITGKS-EAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKMGLENMDVESLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKS 207          
BLAST of FC931147 vs. ExPASy Swiss-Prot
Match: R10A2_ARATH (60S ribosomal protein L10a-2 OS=Arabidopsis thaliana GN=RPL10AB PE=2 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 8.744e-90
Identity = 169/208 (81.25%), Postives = 181/208 (87.02%), Query Frame = 1
Query:   61 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDRRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVXMSVNFLVSLLKKNWQNVRCLYLKS 684
            MSKLQS+A+REAI++I   S+E  KRNF ET+ELQIGLKNYDPQKD+RFSGSVKLPHIPRPKMK+CMLGDAQHVEEAEK+GL  MDVE                  YHAFLASESVIKQIPRLLGPGLNKAGKFPTLV+HQESLE+KVNETKATVKFQLKKVLCMGVAVGNLSMEEKQ+FQNV MSVNFLVSLLKKNWQNVRCLYLKS
Sbjct:    1 MSKLQSEAVREAITTIKGKSEE-KKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQNVQMSVNFLVSLLKKNWQNVRCLYLKS 207          
BLAST of FC931147 vs. ExPASy Swiss-Prot
Match: R10AB_DROME (60S ribosomal protein L10a-2 OS=Drosophila melanogaster GN=RpL10Ab PE=1 SV=2)

HSP 1 Score: 253.832 bits (647), Expect = 6.098e-67
Identity = 124/207 (59.90%), Postives = 157/207 (75.85%), Query Frame = 1
Query:   64 SKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDRRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVXMSVNFLVSLLKKNWQNVRCLYLKS 684
            SK+  D L E ++ +++ S +  KR F ET+ELQIGLKNYDPQKD+RFSG+VKL HIPRPKMKVC+LGD QH +EA+   +D+MD E                  Y AFLASES+IKQIPRLLGPGLNKAGKFP L++HQES+  K+ E K+T+KFQ+KKVLC+ VAVG++ M+  ++ QNV +S+NFLVSLLKKNWQNVR L++KS
Sbjct:    3 SKVSRDTLYEGVNGLLEASAK-KKRGFLETVELQIGLKNYDPQKDKRFSGTVKLKHIPRPKMKVCILGDQQHCDEAKANNVDFMDAEALKKLNKNKKLVKKLAKSYDAFLASESLIKQIPRLLGPGLNKAGKFPALLSHQESMIGKIEEVKSTIKFQMKKVLCLSVAVGHVGMKSDELAQNVNLSINFLVSLLKKNWQNVRSLHVKS 208          
BLAST of FC931147 vs. ExPASy Swiss-Prot
Match: RL10A_SPOFR (60S ribosomal protein L10a OS=Spodoptera frugiperda GN=RpL10A PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.358e-66
Identity = 124/207 (59.90%), Postives = 159/207 (76.81%), Query Frame = 1
Query:   64 SKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDRRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVXMSVNFLVSLLKKNWQNVRCLYLKS 684
            SK+  D L E +++++Q SK+  KRNF ET+ELQIGLKNYDPQKD+RFSG+VKL +IPRPKM+VC+LGD QH +EA+ + +  MD E                  Y AFLASES+IKQIPRLLGPGLNKAGKFP L++HQES+  K++E KAT+KFQ+KKVLC+ VAVG++ M   ++ QNV +S+NFLVSLLKK+WQNVR L++KS
Sbjct:    3 SKVSRDTLYECVNAVLQASKD-KKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKSLTVPCMDAEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKATIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKS 208          
BLAST of FC931147 vs. ExPASy Swiss-Prot
Match: RL10A_XENLA (60S ribosomal protein L10a OS=Xenopus laevis GN=rpl10a PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 7.454e-65
Identity = 119/207 (57.49%), Postives = 156/207 (75.36%), Query Frame = 1
Query:   64 SKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDRRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVXMSVNFLVSLLKKNWQNVRCLYLKS 684
            SK+  D L EA+  ++Q SK+  KR F ET+ELQI LKNYDPQKD+RFSG+V+L   PRPK  +C+LGD QH +EA+ + L +MD+E                  Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E+L +KV+E K+T+KFQ+KKVLC+ VAVG++ + E+++  N+ +S+NFLVSLLKKNWQNVR LY+KS
Sbjct:    3 SKVSRDTLYEAVREVLQGSKK-KKRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSLCVLGDQQHCDEAKAVDLPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENLVAKVDEVKSTIKFQMKKVLCLAVAVGHVKLTEEELVYNIHLSINFLVSLLKKNWQNVRALYIKS 208          
BLAST of FC931147 vs. ExPASy Swiss-Prot
Match: RL10A_DANRE (60S ribosomal protein L10a OS=Danio rerio GN=rpl10a PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.833e-64
Identity = 121/208 (58.17%), Postives = 152/208 (73.08%), Query Frame = 1
Query:   61 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDRRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVXMSVNFLVSLLKKNWQNVRCLYLKS 684
            MSK+  D L EA+   VQ      KR F ET+ELQI LKNYDPQKD+RFSG+V+L   PRPK  VC+LGD QH +EA+   L +MD+E                  Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E+L +KV+E K+T+KFQ+KKVLC+ VAVG++ M E+++  N+ ++VNFLVSLLKKNWQNVR LY+KS
Sbjct:    1 MSKVSRDTLYEAVKE-VQAGSRRKKRKFLETVELQISLKNYDPQKDKRFSGTVRLKTTPRPKFSVCVLGDQQHCDEAKAAELPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENLGTKVDEVKSTIKFQMKKVLCLAVAVGHVKMSEEELVYNIHLAVNFLVSLLKKNWQNVRALYIKS 207          
BLAST of FC931147 vs. ExPASy Swiss-Prot
Match: RL10A_NEUCR (60S ribosomal protein L10a OS=Neurospora crassa GN=rpl-10a PE=3 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.076e-63
Identity = 114/208 (54.81%), Postives = 155/208 (74.52%), Query Frame = 1
Query:   61 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDRRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVXMSVNFLVSLLKKNWQNVRCLYLKS 684
            MSK+   A+R+ ++ +++YS ET KRNF ET+ELQIGLKNYDPQ+D+RFSG+++LP IPRP M +C+LGD   ++ A+  G+D M V+                  Y AF+ASE++IKQIPRLLGPGL+KAGKFPT V+H + L  K+NE K+T+KFQLKKVLCMGVAVGN+ M ++Q+  N+ +++N+LVSLLKK WQNV  L +K+
Sbjct:    1 MSKISVAAVRQHVTDLLEYSNETKKRNFLETVELQIGLKNYDPQRDKRFSGTIRLPSIPRPNMSICILGDQHDIDRAKHGGVDAMSVDDLKKLNKNKKLIKKLARKYDAFVASEALIKQIPRLLGPGLSKAGKFPTPVSHSDDLTGKLNEVKSTIKFQLKKVLCMGVAVGNVGMTQEQLVGNIMLAINYLVSLLKKGWQNVGSLTIKA 208          
BLAST of FC931147 vs. ExPASy Swiss-Prot
Match: RL10A_ICTPU (60S ribosomal protein L10a OS=Ictalurus punctatus GN=rpl10a PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.398e-63
Identity = 119/208 (57.21%), Postives = 152/208 (73.08%), Query Frame = 1
Query:   61 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDRRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVXMSVNFLVSLLKKNWQNVRCLYLKS 684
            MSK+  D L EA+   VQ    + +R F ET+ELQI LKNYDPQKD+RFSG+V+L   PRPK  VC+LGD QH +EA+   + +MD+E                  Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E+L +KV+E K+T+KFQ+KKVLC+ VAVG++ M E ++  N+ ++VNFLVSLLKKNWQNVR LY+KS
Sbjct:    1 MSKVSRDTLYEAVRE-VQAGSISKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKTTPRPKFSVCVLGDQQHCDEAKAAEIPHMDIEALKKLNKNKKMVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENLNTKVDEVKSTIKFQMKKVLCLAVAVGHVRMSEDELVYNIHLAVNFLVSLLKKNWQNVRALYIKS 207          
BLAST of FC931147 vs. ExPASy Swiss-Prot
Match: RL10A_RAT (60S ribosomal protein L10a OS=Rattus norvegicus GN=Rpl10a PE=1 SV=2)

HSP 1 Score: 240.35 bits (612), Expect = 6.977e-63
Identity = 114/207 (55.07%), Postives = 153/207 (73.91%), Query Frame = 1
Query:   64 SKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDRRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVXMSVNFLVSLLKKNWQNVRCLYLKS 684
            SK+  D L EA+  ++ +  +  +R F ET+ELQI LKNYDPQKD+RFSG+V+L   PRPK  VC+LGD QH +EA+ + + +MD+E                  Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E++ +KV+E K+T+KFQ+KKVLC+ VAVG++ M + ++  N+ ++VNFLVSLLKKNWQNVR LY+KS
Sbjct:    3 SKVSRDTLYEAVREVL-HGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKS 208          
The following BLAST results are available for this feature:
BLAST of FC931147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
R10A3_ARATH4.481e-9483.6560S ribosomal protein L10a-3 OS=Arabidopsis thalia... [more]
R10A1_ARATH7.909e-9182.6960S ribosomal protein L10a-1 OS=Arabidopsis thalia... [more]
R10A2_ARATH8.744e-9081.2560S ribosomal protein L10a-2 OS=Arabidopsis thalia... [more]
R10AB_DROME6.098e-6759.9060S ribosomal protein L10a-2 OS=Drosophila melanog... [more]
RL10A_SPOFR1.358e-6659.9060S ribosomal protein L10a OS=Spodoptera frugiperd... [more]
RL10A_XENLA7.454e-6557.4960S ribosomal protein L10a OS=Xenopus laevis GN=rp... [more]
RL10A_DANRE2.833e-6458.1760S ribosomal protein L10a OS=Danio rerio GN=rpl10... [more]
RL10A_NEUCR1.076e-6354.8160S ribosomal protein L10a OS=Neurospora crassa GN... [more]
RL10A_ICTPU2.398e-6357.2160S ribosomal protein L10a OS=Ictalurus punctatus ... [more]
RL10A_RAT6.977e-6355.0760S ribosomal protein L10a OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionC34102A03EF PostHarvP1 Citrus clementina cDNA clone C34102A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931147 ID=FC931147; Name=FC931147; organism=Citrus clementina; type=EST; length=685bp
AGGGTTTCTTTTTCGTCTTCGACGAAAAAAAATCTGTAAAGGACTCCAAG
CGCTTCAATCATGAGCAAGCTTCAGAGTGATGCACTGAGAGAGGCCATCT
CTAGTATTGTGCAATACTCTAAGGAGACAAATAAGAGGAACTTCACCGAG
ACTATTGAGCTTCAGATTGGTCTCAAGAACTATGATCCACAAAAGGACAG
GCGTTTCAGTGGCTCTGTTAAGTTGCCTCACATTCCCCGCCCCAAGATGA
AGGTCTGCATGCTTGGTGATGCTCAACATGTTGAAGAGGCCGAGAAGATT
GGTTTGGACTACATGGATGTTGAAGGATTGAAAAAATTGAACAAGAACAA
GAAATTGGTGAAGAAACTTGCCAAGAAATATCATGCTTTCTTGGCATCAG
AGTCTGTCATCAAGCAGATTCCTCGTTTGTTGGGTCCTGGTCTCAACAAG
GCAGGAAAGTTCCCTACCCTTGTTACTCACCAAGAATCCCTGGAGTCCAA
AGTCAACGAGACTAAGGCAACAGTGAAGTTCCAATTGAAGAAGGTGCTTT
GCATGGGAGTTGCTGTCGGAAACCTTTCAATGGAGGAGAAGCAGATCTTC
CAGAATGTTNCAATGAGTGTTAACTTCCTTGTCTCATTGTTGAAGAAAAA
CTGGCAGAATGTCAGGTGCCTCTATCTGAAGAGTA
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