FC931187

Overview
NameFC931187
Unique NameFC931187
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931187_ssr81 microsatellite FC931187_ssr81:81..95. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig7227 contig Ccv1_Contig7227:196..887. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931187 vs. ExPASy Swiss-Prot
Match: CCS_CITSI (Capsanthin/capsorubin synthase, chromoplast OS=Citrus sinensis GN=CCS PE=3 SV=1)

HSP 1 Score: 462.225 bits (1188), Expect = 1.149e-129
Identity = 218/230 (94.78%), Postives = 219/230 (95.22%), Query Frame = 2
Query:    2 QIIDSTXXXXXXXXXXGRQNACSRKADHHHHHRIRTSKFGNFLELTPESVPEFLDFDLPWFHPSDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRPYGRVSRNILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSFVEYDKPRHHGYHIAHGIL 691
            QIIDST          GRQNACSRKADHHHHHRIRTSKFGNFLELTPESVPEFLDFDLPWFHPSDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRPYGRVSRNILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSFVEYDKPR+HGY IAHGIL
Sbjct:   18 QIIDSTSSPSFSLFPLGRQNACSRKADHHHHHRIRTSKFGNFLELTPESVPEFLDFDLPWFHPSDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRPYGRVSRNILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSFVEYDKPRNHGYQIAHGIL 247          
BLAST of FC931187 vs. ExPASy Swiss-Prot
Match: NXS_SOLTU (Neoxanthin synthase, chloroplastic OS=Solanum tuberosum GN=NXS PE=1 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 9.228e-79
Identity = 142/213 (66.67%), Postives = 166/213 (77.93%), Query Frame = 2
Query:   59 NACSRKADHHHHHRIRTSK-FGNFLELTPESVPEFLDFDLPWFHP-SDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRPYGRVSRNILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSFVEYDKPRHHGYHIAHGIL 691
            N  ++K     H R  +SK F +FL+L P S PE  D ++    P S R ++DVIIIG GPAGLRLAE VS ++ +KVCCVDPSPLS WPNNYGVWVDEFE++GL DCLD  WPMTCV INDHKTKYL RPYGRVSR  LK +LL +CV N VKF+KAKVW V H+EFESSIVCDDG +I+ SL+VDASGFAS F+EYDKPR+HGY IAHG+L
Sbjct:   31 NPTTKKKSRKCHFRNESSKLFCSFLDLAPISKPESFDVNISLVDPNSGRAQFDVIIIGAGPAGLRLAEHVS-KYGIKVCCVDPSPLSMWPNNYGVWVDEFENLGLEDCLDHKWPMTCVHINDHKTKYLGRPYGRVSRKKLKLRLLNSCVENRVKFYKAKVWKVEHEEFESSIVCDDGKKIRGSLVVDASGFASDFIEYDKPRNHGYQIAHGVL 242          
BLAST of FC931187 vs. ExPASy Swiss-Prot
Match: CCS_CAPAN (Capsanthin/capsorubin synthase, chromoplast OS=Capsicum annuum GN=CCS PE=2 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 7.812e-78
Identity = 141/213 (66.20%), Postives = 165/213 (77.46%), Query Frame = 2
Query:   59 NACSRKADHHHHHRIRTSK-FGNFLELTPESVPEFLDFDLPWFHPS-DRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRPYGRVSRNILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSFVEYDKPRHHGYHIAHGIL 691
            N   +K     H+R ++S  F +FL+L P S PE LD ++ W     D   +DVIIIGTGPAGLRLAEQVS ++ +KVCCVDPSPLS WPNNYGVWVDEFE +GL DCLD  WP++CV I+DHKTKYLDRPYGRVSR  LK KLL +CV N VKF+KAKV  V H+EFESSIVCDDG +I  SLIVDASG+AS F+EYDKPR+HGY +AHGIL
Sbjct:   31 NPTKQKDSRKFHYRNKSSTHFCSFLDLAPTSKPESLDVNISWVDTDLDGAEFDVIIIGTGPAGLRLAEQVS-KYGIKVCCVDPSPLSMWPNNYGVWVDEFEKLGLEDCLDHKWPVSCVHISDHKTKYLDRPYGRVSRKKLKLKLLNSCVENRVKFYKAKVLKVKHEEFESSIVCDDGRKISGSLIVDASGYASDFIEYDKPRNHGYQVAHGIL 242          
BLAST of FC931187 vs. ExPASy Swiss-Prot
Match: LCYB_CAPAN (Lycopene beta cyclase, chloroplastic/chromoplastic OS=Capsicum annuum GN=LCY1 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.773e-56
Identity = 100/188 (53.19%), Postives = 140/188 (74.47%), Query Frame = 2
Query:  128 LELTPESVPEFLDFDLPWFHPSDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRPYGRVSRNILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSFVEYDKPRHHGYHIAHGIL 691
            LEL PE+  E LDF+LP + PS  +  D+ ++G GPAGL +A+QVS    + VC +DP+P   WPNNYGVWVDEFE + L+DCLD TW    V+I+D  TK L+RPYGRV+R  LK+K+++ C+ NGVKFH+AKV  V H+E +S ++C+DG  I+A++++DA+GF+ S V+YDKP + GY +A+GIL
Sbjct:   56 LELVPETKKENLDFELPMYDPSKGVVVDLAVVGGGPAGLAVAQQVSEA-GLSVCSIDPNPKLIWPNNYGVWVDEFEAMDLLDCLDATWSGAAVYIDDKTTKDLNRPYGRVNRKQLKSKMMQKCILNGVKFHQAKVIKVIHEESKSMLICNDGITIQATVVLDATGFSRSLVQYDKPYNPGYQVAYGIL 242          
BLAST of FC931187 vs. ExPASy Swiss-Prot
Match: LCYB_TOBAC (Lycopene beta cyclase, chloroplastic OS=Nicotiana tabacum GN=LCY1 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.098e-55
Identity = 102/194 (52.58%), Postives = 140/194 (72.16%), Query Frame = 2
Query:  110 SKFGNFLELTPESVPEFLDFDLPWFHPSDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRPYGRVSRNILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSFVEYDKPRHHGYHIAHGIL 691
            +K    LEL PE+  E LDF+LP + PS  +  D+ ++G GPAGL +A+QVS    + V  +DPSP   WPNNYGVWVDEFE + L+DCLD TW  T V+I+D+ TK LDRPYGRV+R  LK+K+++ C+ NGVKFH AKV  V H+E +S ++C+DG  I+A++++DA+GF+   V+YDKP   GY +A+GIL
Sbjct:   52 AKSSALLELVPETKKENLDFELPMYDPSKGLVVDLAVVGGGPAGLAVAQQVSEA-GLSVVSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDATWSGTVVYIDDNTTKDLDRPYGRVNRKQLKSKMMQKCILNGVKFHHAKVIKVIHEEAKSMLICNDGVTIQATVVLDATGFSRCLVQYDKPYKPGYQVAYGIL 244          
BLAST of FC931187 vs. ExPASy Swiss-Prot
Match: LCYB_SOLLC (Lycopene beta cyclase, chloroplastic OS=Solanum lycopersicum GN=LCY1 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.098e-55
Identity = 99/188 (52.66%), Postives = 139/188 (73.94%), Query Frame = 2
Query:  128 LELTPESVPEFLDFDLPWFHPSDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRPYGRVSRNILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSFVEYDKPRHHGYHIAHGIL 691
            LEL PE+  E LDF+LP + PS  +  D+ ++G GPAGL +A+QVS    + VC +DP+P   WPNNYGVWVDEFE + L+DCLD TW    V+I+D+  K L RPYGRV+R  LK+K+++ C+ NGVKFH+AKV  V H+E +S ++C+DG  I+A++++DA+GF+ S V+YDKP + GY +A+GIL
Sbjct:   58 LELVPETKKENLDFELPMYDPSKGVVVDLAVVGGGPAGLAVAQQVSEA-GLSVCSIDPNPKLIWPNNYGVWVDEFEAMDLLDCLDATWSGAAVYIDDNTAKDLHRPYGRVNRKQLKSKMMQKCIMNGVKFHQAKVIKVIHEESKSMLICNDGITIQATVVLDATGFSRSLVQYDKPYNPGYQVAYGIL 244          
BLAST of FC931187 vs. ExPASy Swiss-Prot
Match: LCYB_ARATH (Lycopene beta cyclase, chloroplastic OS=Arabidopsis thaliana GN=LCY1 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.289e-53
Identity = 97/188 (51.60%), Postives = 137/188 (72.87%), Query Frame = 2
Query:  128 LELTPESVPEFLDFDLPWFHPSDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRPYGRVSRNILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSFVEYDKPRHHGYHIAHGIL 691
            L+L PE+  E LDF+LP +  S     D+ I+G GPAGL +A+QVS    + VC +DPSP   WPNNYGVWVDEFE + L+DCLD TW    V++++   K L RPYGRV+R  LK+K+L+ C++NGVKFH++KV +V H+E  S++VC DG +I+AS+++DA+GF+   V+YDKP + GY +A+GI+
Sbjct:   57 LDLVPETKKENLDFELPLYDTSKSQVVDLAIVGGGPAGLAVAQQVSEA-GLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVYVDEGVKKDLSRPYGRVNRKQLKSKMLQKCITNGVKFHQSKVTNVVHEEANSTVVCSDGVKIQASVVLDATGFSRCLVQYDKPYNPGYQVAYGIV 243          
BLAST of FC931187 vs. ExPASy Swiss-Prot
Match: LCYB_NARPS (Lycopene beta cyclase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=LCY1 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.697e-48
Identity = 88/188 (46.81%), Postives = 125/188 (66.49%), Query Frame = 2
Query:  128 LELTPESVPEFLDFDLPWFHPSDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRPYGRVSRNILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSFVEYDKPRHHGYHIAHGIL 691
            L+L PE   E L+FDLP + PS  +  D+ ++G GP     +  +     + V  +DP+P   WPNNYGVWVDEFED+ L+DCLD TW    V+++D  TK L RPY RV+R  LK+K+++ CVSNGV+FH+A V    H+E +S ++C DG  I A +++DA+GF+   V+YDKP + GY +A+GIL
Sbjct:   62 LDLVPEIKKEHLEFDLPLYDPSKALTLDLAVVGGGPLARSCSTSLGG--GLSVVSIDPNPKLIWPNNYGVWVDEFEDMDLLDCLDATWSGAIVYVDDRSTKNLSRPYARVNRKNLKSKMMKKCVSNGVRFHQATVVKAMHEEEKSYLICSDGVTIDARVVLDATGFSRCLVQYDKPYNPGYQVAYGIL 247          
BLAST of FC931187 vs. ExPASy Swiss-Prot
Match: LCYE_ARATH (Lycopene epsilon cyclase, chloroplastic OS=Arabidopsis thaliana GN=LUT2 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.498e-23
Identity = 61/142 (42.96%), Postives = 83/142 (58.45%), Query Frame = 2
Query:  209 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRPYGRVSRNILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIV-CDDGNEIKASLIVDASGFAS 631
            D+++IG GPAGL LA + S++  +KV  + P    T  NNYGVW DEF D+GL  C++  W  T V+++D K   + R YGRVSR +L  +LL  CV +GV +  +KV  +        +V CDD N I   L   ASG AS
Sbjct:  110 DLVVIGCGPAGLALAAE-SAKLGLKVGLIGPDLPFT--NNYGVWEDEFNDLGLQKCIEHVWRETIVYLDDDKPITIGRAYGRVSRRLLHEELLRRCVESGVSYLSSKVDSITEASDGLRLVACDDNNVIPCRLATVASGAAS 248          
BLAST of FC931187 vs. ExPASy Swiss-Prot
Match: LCYE_SOLLC (Lycopene epsilon cyclase, chloroplastic OS=Solanum lycopersicum GN=CRTL-E-1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.336e-20
Identity = 59/149 (39.60%), Postives = 87/149 (58.39%), Query Frame = 2
Query:  209 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRPYGRVSRNILKTKLLENCVSNGVKFHKAKVWH-VNHQEFESSIVCDDGNEIKASLIVDASGFAS-SFVEYD 649
            D+++IG GPAGL LA + S++  + V  V P    T  NNYGVW DEF+D+GL  C++  W  T V+++D +   + R YGRVSR+ L  +LL+ CV  GV +  +KV   V     +S + C+    I    +  ASG AS  F++Y+
Sbjct:  107 DLVVIGCGPAGLALAAE-SAKLGLNVGLVGPDLPFT--NNYGVWEDEFKDLGLQACIEHVWRDTIVYLDDDEPILIGRAYGRVSRHFLHEELLKRCVEAGVLYLNSKVDRIVEATNGQSLVECEGDVVIPCRFVTVASGAASGKFLQYE 252          
The following BLAST results are available for this feature:
BLAST of FC931187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
CCS_CITSI1.149e-12994.78Capsanthin/capsorubin synthase, chromoplast OS=Cit... [more]
NXS_SOLTU9.228e-7966.67Neoxanthin synthase, chloroplastic OS=Solanum tube... [more]
CCS_CAPAN7.812e-7866.20Capsanthin/capsorubin synthase, chromoplast OS=Cap... [more]
LCYB_CAPAN3.773e-5653.19Lycopene beta cyclase, chloroplastic/chromoplastic... [more]
LCYB_TOBAC1.098e-5552.58Lycopene beta cyclase, chloroplastic OS=Nicotiana ... [more]
LCYB_SOLLC1.098e-5552.66Lycopene beta cyclase, chloroplastic OS=Solanum ly... [more]
LCYB_ARATH2.289e-5351.60Lycopene beta cyclase, chloroplastic OS=Arabidopsi... [more]
LCYB_NARPS1.697e-4846.81Lycopene beta cyclase, chloroplastic/chromoplastic... [more]
LCYE_ARATH5.498e-2342.96Lycopene epsilon cyclase, chloroplastic OS=Arabido... [more]
LCYE_SOLLC3.336e-2039.60Lycopene epsilon cyclase, chloroplastic OS=Solanum... [more]

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Properties
Property NameValue
Genbank descriptionC34102D08EF PostHarvP1 Citrus clementina cDNA clone C34102D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931187 ID=FC931187; Name=FC931187; organism=Citrus clementina; type=EST; length=692bp
GCAAATAATTGATTCAACATCATCACCTTCATTTTCCCTATTTCCATTAG
GCCGCCAAAATGCATGTTCAAGAAAGGCGGATCATCATCATCATCACAGG
ATCCGGACAAGCAAGTTTGGTAACTTCCTAGAGTTGACACCGGAGTCGGT
ACCTGAATTCTTAGACTTTGATCTCCCCTGGTTTCATCCGTCCGATCGTA
TTCGATATGACGTGATCATCATTGGCACTGGACCAGCCGGCCTCCGTCTA
GCTGAGCAAGTCTCATCGCGTCATAGTGTCAAGGTATGTTGTGTTGATCC
TTCACCTCTTTCTACGTGGCCTAACAACTATGGAGTTTGGGTTGATGAGT
TTGAAGACATAGGACTTGTAGACTGTTTGGACAAAACTTGGCCGATGACT
TGTGTTTTTATTAATGATCACAAGACCAAGTATCTAGACAGGCCCTACGG
TCGTGTTAGTAGAAATATTTTGAAGACAAAGTTATTAGAGAATTGTGTTT
CAAATGGAGTTAAGTTTCATAAGGCTAAAGTTTGGCACGTGAATCATCAG
GAGTTCGAGTCTTCGATTGTTTGTGATGATGGGAATGAGATTAAGGCTAG
CTTGATTGTTGATGCTAGTGGCTTTGCTAGTAGTTTTGTTGAGTATGATA
AGCCAAGACACCATGGATACCACATTGCTCATGGGATTTTAG
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