FC931188

Overview
NameFC931188
Unique NameFC931188
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931188 vs. ExPASy Swiss-Prot
Match: RTNLL_ARATH (Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.419e-40
Identity = 90/210 (42.86%), Postives = 123/210 (58.57%), Query Frame = 1
Query:   97 MGSSSDRLFKRQRTIHEILGGGLVDGLSVWFRS*C*SLFKLITAADVILWRRKNVTVGILLVTLAAWVVFERSGYTXXXXXXXXXXXXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYXILGYRKLRQLYVK 726
            M SSSD+LF R RTIHEILGGG+V                    ADV+LWR+KNV+VGI+ VT+A+W+VFE   YT                          NRP+PPLPE  +SE M  E +  +R  VN  L VS D+A+ ++S L+ +VA+ L+L+S +G L DF TL +TS+++V+T+PA YERYED+I         K R+LY++
Sbjct:    1 MSSSSDKLFNRDRTIHEILGGGIV--------------------ADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLLLLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDSELYTKVAVSLFLLSLIGSLMDFQTLCHTSVLVVMTVPAFYERYEDYIVGSIEFICNKTRELYLR 190          
BLAST of FC931188 vs. ExPASy Swiss-Prot
Match: RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.511e-29
Identity = 72/208 (34.62%), Postives = 109/208 (52.40%), Query Frame = 1
Query:  100 GSSSD-RLFKRQRTIHEILGGGLVDGLSVWFRS*C*SLFKLITAADVILWRRKNVTVGILLVTLAAWVVFERSGYTXXXXXXXXXXXXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYXILGYRKLRQLY 720
            GSSSD RL  RQ T+H+ +GGG                     AAD++LWRR+++++G+++++  AW++FE SG                            NR    LPEL LSEEMVN  AA  R ++N  L ++ D+ +G + RLFF+V + LWL+S +G      TL Y   ++ +T+PALY +Y+  +DK     +R+L   Y
Sbjct:   18 GSSSDYRLLGRQITVHQFMGGG--------------------KAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHY 205          
BLAST of FC931188 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.873e-25
Identity = 63/211 (29.86%), Postives = 106/211 (50.24%), Query Frame = 1
Query:   88 SSKMGSSSDRLFKRQRTIHEILGGGLVDGLSVWFRS*C*SLFKLITAADVILWRRKNVTVGILLVTLAAWVVFERSGYTXXXXXXXXXXXXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYXILGYRKLRQLY 720
            SS   S   RLF R++ +H++LGGG                      AD+ LWR K V+ G+L    A+WV+FE   Y                           ++  P +PE+H+ E+ + ++ + +R  +N  L++ +++A GK+ + F  V   LW++S +G   +FLTL YT+ V++ T+P LYE+YED +D Y     R++++ Y
Sbjct:   42 SSSFKSKIYRLFGREKPVHKVLGGG--------------------KPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQY 232          
BLAST of FC931188 vs. ExPASy Swiss-Prot
Match: RTNLJ_ARATH (Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.207e-23
Identity = 58/168 (34.52%), Postives = 92/168 (54.76%), Query Frame = 1
Query:  223 TAADVILWRRKNVTVGILLVTLAAWVVFERSGYTXXXXXXXXXXXXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYXILGYRKLRQLYVK 726
            + AD+I+W+ +     +L  T   W +FE+ GY+                          NRP P LP L ++EE V  VA  IR  +N  L+V++++ +G+N++  FRV++ LW +SFVG   +FLT+ Y  +V+ L +P LYERY+D ID+   L +R ++  Y K
Sbjct:   13 SVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVILFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSLTHRVIQTQYRK 180          
BLAST of FC931188 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.689e-23
Identity = 62/211 (29.38%), Postives = 103/211 (48.82%), Query Frame = 1
Query:   88 SSKMGSSSDRLFKRQRTIHEILGGGLVDGLSVWFRS*C*SLFKLITAADVILWRRKNVTVGILLVTLAAWVVFERSGYTXXXXXXXXXXXXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYXILGYRKLRQLY 720
            SS M S   RLF R++ +H++LGGG                      AD+ +W+ K ++ G+L    AAWVVFE   Y                           N+  P +PE+H+ EE + ++A+ +R  +N   S  +++A G++ + F      LW++S +GG  +FLTL Y +LV++ T+P  Y++YED +D        +L++ Y
Sbjct:   63 SSSMKSKVYRLFGREQPVHKVLGGG--------------------KPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQY 253          
BLAST of FC931188 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.586e-23
Identity = 63/203 (31.03%), Postives = 99/203 (48.77%), Query Frame = 1
Query:  115 RLFKRQRTIHEILGGGLVDGLSVWFRS*C*SLFKLITAADVILWRRKNVTVGILLVTLAAWVVFERSGYTXXXXXXXXXXXXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYXILGYRKLRQLYV 723
            R+F R++ +H++LGGG                      ADV LWR K ++  +L V  A WV+FE   Y                           N+ +P +PE+H+ EE    VA+ +R  +N    + + +ALG++ + F  V + LW+IS VG   +FLTL Y   VI+ T+P LYE++ED +D       ++L++ YV
Sbjct:   51 RMFGREKPVHKVLGGG--------------------KPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYV 233          
BLAST of FC931188 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.823e-23
Identity = 61/203 (30.05%), Postives = 97/203 (47.78%), Query Frame = 1
Query:  115 RLFKRQRTIHEILGGGLVDGLSVWFRS*C*SLFKLITAADVILWRRKNVTVGILLVTLAAWVVFERSGYTXXXXXXXXXXXXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYXILGYRKLRQLYV 723
            RLF R++ +H++LGGGL                     ADV LWR K ++  +L V  A WV+FE   Y                           N+  P +PE+H+ EE    + + +R  +N    + + +ALG++ + F  V   LW+IS VG   +FLTL Y   V++ T+P LYE++ED +D       ++L++ Y+
Sbjct:   51 RLFGREKPVHKVLGGGL--------------------PADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTLVYICFVVLHTVPMLYEKHEDKVDPVAEKTLKELKKHYM 233          
BLAST of FC931188 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.743e-22
Identity = 59/213 (27.70%), Postives = 106/213 (49.77%), Query Frame = 1
Query:   88 SSKMGSSSDRLFKRQRTIHEILGGGLVDGLSVWFRS*C*SLFKLITAADVILWRRKNVTVGILLVTLAAWVVFERSGYTXXXXXXXXXXXXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYXILGYRKLRQLYVK 726
            S+ + +   RLF R++ +H++ GGG                      AD+ LWR K V+ G+L     +W++FE   Y                           ++    +PE+H+ E++V ++A+ +R  +N   +V +D+A G++ + F  V   LW++S VG   +FLTL Y + V++ T+P LYE+YED +D +     R++++ YV+
Sbjct:   38 SASLKTKIYRLFGREQPLHKLFGGG--------------------KPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVDDFGEKAMREIKKQYVE 230          
BLAST of FC931188 vs. ExPASy Swiss-Prot
Match: RTNLK_ARATH (Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.276e-22
Identity = 51/153 (33.33%), Postives = 83/153 (54.25%), Query Frame = 1
Query:  223 TAADVILWRRKNVTVGILLVTLAAWVVFERSGYTXXXXXXXXXXXXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDK 681
            + AD++LWR +   V +L+ +   W +FER+GY                           NRP PP+P + + EE  N+ A  +R  +N  LS++ D+ + +N     +V+L LW IS+VG L + LTL Y  +++ L+ P +YE+Y+DHID+
Sbjct:   21 SVADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLWAKSATVLNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVSLVLWAISYVGTLINSLTLVYIGVLLSLSFPIVYEKYQDHIDE 173          
BLAST of FC931188 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.071e-22
Identity = 56/202 (27.72%), Postives = 98/202 (48.51%), Query Frame = 1
Query:  115 RLFKRQRTIHEILGGGLVDGLSVWFRS*C*SLFKLITAADVILWRRKNVTVGILLVTLAAWVVFERSGYTXXXXXXXXXXXXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYXILGYRKLRQLY 720
            RLF R+R +H++LGGG                      AD+ +W+ K ++ G+      AWV+FE   Y                           ++  P +PE+H+ EE + ++A+ +R  +N  +S  +++A G++ + F      LW++S +GG   FLTL Y +LV++ T+P  Y++YED +D Y      +L++ Y
Sbjct:   68 RLFGRERPVHKVLGGG--------------------KPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQY 249          
The following BLAST results are available for this feature:
BLAST of FC931188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RTNLL_ARATH1.419e-4042.86Reticulon-like protein B12 OS=Arabidopsis thaliana... [more]
RTNLP_ARATH2.511e-2934.62Reticulon-like protein B16 OS=Arabidopsis thaliana... [more]
RTNLD_ARATH2.873e-2529.86Reticulon-like protein B4 OS=Arabidopsis thaliana ... [more]
RTNLJ_ARATH1.207e-2334.52Reticulon-like protein B10 OS=Arabidopsis thaliana... [more]
RTNLA_ARATH2.689e-2329.38Reticulon-like protein B1 OS=Arabidopsis thaliana ... [more]
RTNLE_ARATH4.586e-2331.03Reticulon-like protein B5 OS=Arabidopsis thaliana ... [more]
RTNLF_ARATH7.823e-2330.05Reticulon-like protein B6 OS=Arabidopsis thaliana ... [more]
RTNLC_ARATH1.743e-2227.70Reticulon-like protein B3 OS=Arabidopsis thaliana ... [more]
RTNLK_ARATH2.276e-2233.33Reticulon-like protein B11 OS=Arabidopsis thaliana... [more]
RTNLB_ARATH5.071e-2227.72Reticulon-like protein B2 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionC34102D09EF PostHarvP1 Citrus clementina cDNA clone C34102D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931188 ID=FC931188; Name=FC931188; organism=Citrus clementina; type=EST; length=728bp
ACTTTTCTCTTTTCTGAGAGATCATCAAAACTACTTGTTACACGGGTTTT
AGAGATCTGGTCTGGATTCAAGATTCTGTTTTTAGTATCTTCTAAAATGG
GTTCATCTTCCGATCGATTGTTTAAAAGACAAAGAACTATTCATGAAATC
CTCGGAGGAGGTCTTGTTGATGGATTGAGTGTTTGGTTCAGGAGTTGATG
TTGATCTTTGTTCAAACTTATAACAGCTGCAGATGTGATTCTTTGGAGGC
GAAAAAATGTAACTGTGGGAATATTGTTGGTAACATTAGCTGCTTGGGTG
GTGTTTGAGAGATCTGGTTACACTTTGTTGTCGCTTGTCTCTAGTGTTCT
ACTACTCCTCATTGCCATTTTGTTTATTTGGGCCAAAGCTGCTGCAATTC
TTAATCGGCCTGCACCACCCCTGCCAGAGTTGCATCTATCAGAAGAAATG
GTAAATGAAGTTGCAGCTTTGATTCGCACTCGTGTAAATGATTTCCTCTC
AGTTTCTCAGGACATGGCCCTGGGCAAGAACTCGAGATTGTTCTTCAGAG
TAGCTCTATACTTGTGGCTGATCTCCTTTGTTGGTGGCTTGACAGATTTT
CTTACATTAGGCTACACCAGCCTTGTTATTGTTCTGACACTTCCAGCCTT
ATATGAGAGATACGAAGATCATATTGATAAATATGNCATATTGGGCTACC
GGAAACTTCGACAGCTGTATGTGAAAAT
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