FC931189

Overview
NameFC931189
Unique NameFC931189
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11394 contig Ccv1_Contig11394:887..1520. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931189 vs. ExPASy Swiss-Prot
Match: AMT2_ARATH (Ammonium transporter 2 OS=Arabidopsis thaliana GN=AMT2 PE=1 SV=2)

HSP 1 Score: 283.493 bits (724), Expect = 6.150e-76
Identity = 139/210 (66.19%), Postives = 164/210 (78.10%), Query Frame = 3
Query:    3 FPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQLCKLTLPEP-TRGAFYGGRGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPLRMPEEQL 629
            FPPNNV              SGFNGGAPYAA++ SSIA+LNTN++AATSLLVWT LDVIFFGKPSVIGA+QGM+TGL  +TPGAGL+Q+WAAI++G++SG+ PW +MMI+HKK +LLQ+VDDTLAVF+THAV           FA P LC L LP P TRGAFYGG GG Q LKQ+ GA F+  WN+VSTTIILLAIR+FIPLRM EE+L
Sbjct:  213 FPPNNVLLMLAGAGLLWMGWSGFNGGAPYAANLTSSIAVLNTNLSAATSLLVWTTLDVIFFGKPSVIGAIQGMVTGLAGVTPGAGLIQTWAAIIIGVVSGTAPWASMMIIHKKSALLQKVDDTLAVFYTHAVAGLLGGIMTGLFAHPDLCVLVLPLPATRGAFYGGNGGKQLLKQLAGAAFIAVWNVVSTTIILLAIRVFIPLRMAEEEL 422          
BLAST of FC931189 vs. ExPASy Swiss-Prot
Match: AMT31_ORYSJ (Ammonium transporter 3 member 1 OS=Oryza sativa subsp. japonica GN=AMT3-1 PE=2 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.049e-75
Identity = 141/212 (66.51%), Postives = 164/212 (77.36%), Query Frame = 3
Query:    3 FPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQLCKLTLP-EPTRGAFYGGR-GGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPLRMPEEQLA 632
            FPPNNV              +GFNGG PY+A+I SS+A+LNTN+ AATSLLVWTCLDVIFF KPSVIGAVQGM+TGLVCITPGAGLVQ WAAIVMGILSGSIPW TMM++HK+  LLQQVDDTL VFHTHAV           FAEP LC L LP   +RGAFY GR GG+QF++Q+ GALF+I WN+V T+++ LA+R  +PLRMPEE+LA
Sbjct:  236 FPPNNVLLMLTGAGILWMGWAGFNGGDPYSANIDSSLAVLNTNICAATSLLVWTCLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGILSGSIPWFTMMVVHKRSRLLQQVDDTLGVFHTHAVAGFLGGATTGLFAEPVLCSLFLPVTNSRGAFYPGRGGGLQFVRQVAGALFIICWNVVVTSLVCLAVRAVVPLRMPEEELA 447          
BLAST of FC931189 vs. ExPASy Swiss-Prot
Match: AMT32_ORYSJ (Ammonium transporter 3 member 2 OS=Oryza sativa subsp. japonica GN=AMT3-2 PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 2.047e-71
Identity = 128/210 (60.95%), Postives = 155/210 (73.81%), Query Frame = 3
Query:    3 FPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQLCKLTLP-EPTRGAFYGGRGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPLRMPEEQL 629
            FPPNN+              +GFNGG PYAA+  +S+A+LNTN+  A SL+VWTCLDVIFF KPSV+GAVQGM+TGLVCITP AG+VQ WAA+VMG+L+GSIPW TMMILHK+  +LQ+VDDTL VFHTH V           FAEP LC L LP   +RGAFYGG GG QF KQI G LFV+AWN+  T++I LAI + +PLRMP+++L
Sbjct:  232 FPPNNILFTLTGAGLLWMGWAGFNGGGPYAANSVASMAVLNTNICTAMSLIVWTCLDVIFFKKPSVVGAVQGMITGLVCITPAAGVVQGWAALVMGVLAGSIPWYTMMILHKRSKILQRVDDTLGVFHTHGVAGLLGGLLTGLFAEPTLCNLFLPVADSRGAFYGGAGGAQFGKQIAGGLFVVAWNVAVTSLICLAINLLVPLRMPDDKL 441          
BLAST of FC931189 vs. ExPASy Swiss-Prot
Match: AMT21_ORYSJ (Ammonium transporter 2 member 1 OS=Oryza sativa subsp. japonica GN=AMT2-1 PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 3.492e-71
Identity = 140/210 (66.67%), Postives = 157/210 (74.76%), Query Frame = 3
Query:    3 FPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQLCKLTLPEP-TRGAFYGGRGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPLRMPEEQL 629
            F PNN+              +GFNGGAPYAA+IA+S+A+LNTNV AATSLL+WTCLDVIFF KPSVIGAVQGMMTGLVCITPGAGLVQ+WAA+VMGI +GS+PW TMMILHKK +LL +VDDTLAVFHTHAV            A P+L  L    P  RGAFYGG G  Q  KQ+ GA FVIAWNLV TT ILL I +FIPLRMP+EQL
Sbjct:  220 FSPNNILLMIAGGGLLWMGWAGFNGGAPYAANIAASVAVLNTNVCAATSLLMWTCLDVIFFRKPSVIGAVQGMMTGLVCITPGAGLVQTWAAVVMGIFAGSVPWFTMMILHKKSALLMKVDDTLAVFHTHAVAGLLGGILTGLLATPELFSLESTVPGLRGAFYGG-GIKQIGKQLGGAAFVIAWNLVVTTAILLGIGLFIPLRMPDEQL 428          
BLAST of FC931189 vs. ExPASy Swiss-Prot
Match: AMT33_ORYSJ (Ammonium transporter 3 member 3 OS=Oryza sativa subsp. japonica GN=AMT3-3 PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 5.957e-71
Identity = 133/210 (63.33%), Postives = 158/210 (75.24%), Query Frame = 3
Query:    3 FPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQLCKLTLPEP-TRGAFYGGRGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPLRMPEEQL 629
            FPPNN+              +GFNGG PY+A+I SS+A+LNT++ A+TSLLVWT LDV FFGKPSVIGAVQGM+TGLVCITPGAGLVQ WAAIVMGILSGSIPW TMM+LHKK S +Q++DDTL VFHTHAV           FAEP LC L L  P ++GAFYGG GG QF KQI GALFV AWN+V T+II + I + +PLR+ +++L
Sbjct:  228 FPPNNILLVLAGAGLLWLGWTGFNGGDPYSANIDSSMAVLNTHICASTSLLVWTILDVFFFGKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGILSGSIPWYTMMVLHKKWSFMQRIDDTLGVFHTHAVAGFLGGATTGLFAEPILCSLFLSIPDSKGAFYGGPGGSQFGKQIAGALFVTAWNIVITSIICVIISLILPLRIADQEL 437          
BLAST of FC931189 vs. ExPASy Swiss-Prot
Match: AMT23_ORYSJ (Ammonium transporter 2 member 3 OS=Oryza sativa subsp. japonica GN=AMT2-3 PE=2 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 4.269e-69
Identity = 133/210 (63.33%), Postives = 155/210 (73.81%), Query Frame = 3
Query:    3 FPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQLCKLTLPEP-TRGAFYGGRGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPLRMPEEQL 629
            F PNN+              +GFNGGAPYA +I +SIA+LNTNV+AA SLL WTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLV +WAAI+MGI  GS+PW +MMILHK+ +LLQ+VDDTLAVFHTHAV           FA P L  +    P  RGAFYGG G  Q  KQI GALFV+ WN+V+TT+ILL + + +PLRMP+EQL
Sbjct:  229 FSPNNILLMIAGGGLLWLGWAGFNGGAPYAPNITASIAVLNTNVSAAASLLTWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVHTWAAILMGICGGSLPWFSMMILHKRSALLQKVDDTLAVFHTHAVAGLLGGFLTGLFALPDLTAVHTHIPGARGAFYGG-GIAQVGKQIAGALFVVVWNVVATTVILLGVGLVVPLRMPDEQL 437          
BLAST of FC931189 vs. ExPASy Swiss-Prot
Match: AMT22_ORYSJ (Ammonium transporter 2 member 2 OS=Oryza sativa subsp. japonica GN=AMT2-2 PE=2 SV=2)

HSP 1 Score: 253.832 bits (647), Expect = 5.218e-67
Identity = 127/210 (60.48%), Postives = 152/210 (72.38%), Query Frame = 3
Query:    3 FPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQLCKLTLPEPT-RGAFYGGRGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPLRMPEEQL 629
            F PNN+              +GFNGGAPYA ++ +++A+LNTNV+AATSLL WTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLV +W+A++MG+ +GS+PW TMMILHKK + L +VDDTLAVFHTHAV            A P+LC L  P P  RG FYG   G Q  KQ+ GALFV  WNL+ T+ ILL I +FIPLRM ++QL
Sbjct:  233 FSPNNILLMIAGGGLLWLGWAGFNGGAPYAPNVTATVAVLNTNVSAATSLLTWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVHTWSAMLMGMFAGSVPWFTMMILHKKSTFLMKVDDTLAVFHTHAVAGILGGVLTGLLATPELCALDCPIPNMRGVFYGSGIG-QLGKQLGGALFVTVWNLIVTSAILLCIGLFIPLRMSDDQL 441          
BLAST of FC931189 vs. ExPASy Swiss-Prot
Match: AMT41_ORYSJ (Putative ammonium transporter 4 member 1 OS=Oryza sativa subsp. japonica GN=AMT4-1 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.342e-30
Identity = 85/212 (40.09%), Postives = 110/212 (51.89%), Query Frame = 3
Query:    3 FPPNNVXXXXXXXXXXXXXX-SGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAV--XXXXXXXXXXXFAEPQLCKLTLPEPTR--GAFY------GGRGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIP 605
            FPPNNV               +GFNGGAPYAA++ +S+ ++NT++  ATSLLVW  LD   FG+ SVI AVQGM+TGLVC+TP A LV                      LHK+  LL +VDDTLAV HTH V              AEP+  +L   +  R  G  Y       G G  Q   Q+ G  FV+A N+  T+ + LA+R+ +P
Sbjct:   54 FPPNNVLLTLAGAGLLLWMGWTGFNGGAPYAANVDASVTVVNTHLCTATSLLVWLLLDSFVFGRLSVISAVQGMITGLVCVTPAARLV----------------------LHKRSRLLARVDDTLAVLHTHGVAGSLSGVLTGLLLLAEPRFARLFFGDDPRYVGLAYAVRDGRAGSGLRQVGVQLAGIAFVVALNVAVTSAVCLAVRVAVP 243          
BLAST of FC931189 vs. ExPASy Swiss-Prot
Match: AMT_AQUAE (Ammonia channel OS=Aquifex aeolicus GN=amt PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.163e-20
Identity = 63/206 (30.58%), Postives = 98/206 (47.57%), Query Frame = 3
Query:    9 PNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQLCKLTLPEPTRGAFYGGRGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPLRMPEEQ 626
            PNNV               GFN G+   A+ +++ A++NT VA +T+ L W   + +  GKP+V+G   G++ GLV ITP AG V    +I +G ++    +  + ++  K       DD L VF  H V           FA+P +        T G  YG     Q L QI G +  I ++ + T +ILL ++  + LR+ EE+
Sbjct:  214 PNNVPLVALGAGILWFGWFGFNAGSALGANESAAWAMINTTVATSTAALAWMFTEWLHVGKPTVVGISSGIVAGLVAITPAAGFVNLIGSIFIGAIASVCAYFMVALVKPKFG----YDDALDVFGIHGVRGIVGAVLTGVFADPNV------GGTPGLLYG--NPKQVLIQIEGVIATILYSAILTAVILLVLKAVVGLRVSEEE 407          
BLAST of FC931189 vs. ExPASy Swiss-Prot
Match: NRGA_BACSU (Ammonium transporter nrgA OS=Bacillus subtilis GN=nrgA PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.641e-18
Identity = 59/187 (31.55%), Postives = 89/187 (47.59%), Query Frame = 3
Query:   66 GFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQLCKLTLPEPTRGAFYGGRGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPLRMPEEQ 626
            GFN G+       +  A +NTN AAA  +  W  ++ I   KP+++GAV G + GLV ITP AG V  +A+I++GI+ G++ +  +  L KK       DD L  F  H +           FA   +          G FYG    +   KQIV       +  + T +I+  + +F+PLR  EE+
Sbjct:  209 GFNVGSALTLDGVAMYAFINTNTAAAAGIAGWILVEWIINKKPTMLGAVSGAIAGLVAITPAAGFVTPFASIIIGIIGGAVCFWGVFSLKKKFG----YDDALDAFGLHGIGGTWGGIATGLFATTSVNS----AGADGLFYGDASLI--WKQIVAIAATYVFVFIVTFVIIKIVSLFLPLRATEEE 385          
The following BLAST results are available for this feature:
BLAST of FC931189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
AMT2_ARATH6.150e-7666.19Ammonium transporter 2 OS=Arabidopsis thaliana GN=... [more]
AMT31_ORYSJ1.049e-7566.51Ammonium transporter 3 member 1 OS=Oryza sativa su... [more]
AMT32_ORYSJ2.047e-7160.95Ammonium transporter 3 member 2 OS=Oryza sativa su... [more]
AMT21_ORYSJ3.492e-7166.67Ammonium transporter 2 member 1 OS=Oryza sativa su... [more]
AMT33_ORYSJ5.957e-7163.33Ammonium transporter 3 member 3 OS=Oryza sativa su... [more]
AMT23_ORYSJ4.269e-6963.33Ammonium transporter 2 member 3 OS=Oryza sativa su... [more]
AMT22_ORYSJ5.218e-6760.48Ammonium transporter 2 member 2 OS=Oryza sativa su... [more]
AMT41_ORYSJ1.342e-3040.09Putative ammonium transporter 4 member 1 OS=Oryza ... [more]
AMT_AQUAE8.163e-2030.58Ammonia channel OS=Aquifex aeolicus GN=amt PE=1 SV... [more]
NRGA_BACSU7.641e-1831.55Ammonium transporter nrgA OS=Bacillus subtilis GN=... [more]

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Properties
Property NameValue
Genbank descriptionC34102D10EF PostHarvP1 Citrus clementina cDNA clone C34102D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931189 ID=FC931189; Name=FC931189; organism=Citrus clementina; type=EST; length=634bp
GGTTTCCTCCGAATAATGTGCTGCTCATGCTTGCGGGAGCCGGGCTGCTG
TGGATGGGATGGTCGGGTTTCAACGGTGGGGCTCCTTATGCTGCTCATAT
CGCCTCTTCGATCGCTATTCTAAACACAAATGTAGCGGCGGCCACGAGCC
TTCTTGTTTGGACATGTCTTGATGTTATCTTCTTTGGGAAGCCTTCAGTT
ATCGGAGCTGTTCAGGGCATGATGACTGGCCTTGTTTGCATCACCCCAGG
AGCTGGGCTGGTACAATCATGGGCGGCTATTGTAATGGGCATTCTTTCTG
GTAGCATTCCATGGGTAACTATGATGATTCTTCACAAGAAGTGTAGTCTT
CTTCAACAGGTGGATGACACACTGGCTGTGTTTCACACGCACGCGGTGAC
TGGGCTGTTGGGCGGGCTACTGACCGGGCTATTTGCGGAGCCACAACTGT
GCAAGCTCACACTACCAGAGCCCACAAGAGGAGCATTCTACGGGGGGAGA
GGCGGGGTGCAATTTCTGAAGCAGATTGTTGGGGCTCTGTTTGTTATCGC
CTGGAATTTAGTTTCCACAACAATCATTCTCCTGGCAATAAGGATATTCA
TTCCATTGAGAATGCCTGAAGAGCAGCTCGCGAT
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