FC931190

Overview
NameFC931190
Unique NameFC931190
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931190 vs. ExPASy Swiss-Prot
Match: EBF1_ARATH (EIN3-binding F-box protein 1 OS=Arabidopsis thaliana GN=EBF1 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.860e-49
Identity = 47/78 (60.26%), Postives = 62/78 (79.49%), Query Frame = 3
Query:  414 TDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSRCSEVSNKSMPALKKLGKTLVGLNLQYCYSI 647
            TDASLV+I  NC  LS LD+SKCAI+D GI AL+ +++L LQ+LS++ CS V++KS+PA+  LG TL+GLNLQ C SI
Sbjct:  532 TDASLVSIAANCQILSDLDISKCAISDSGIQALASSDKLKLQILSVAGCSMVTDKSLPAIVGLGSTLLGLNLQQCRSI 609          

HSP 2 Score: 77.7962 bits (190), Expect = 2.860e-49
Identity = 37/71 (52.11%), Postives = 50/71 (70.42%), Query Frame = 1
Query:    1 NRVSQSWILGVVSYSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQ 213
            +RV+Q    G +     KLK+ +LV C+ I+D+ T +P  S   +LRSLSIRNCPGFG+A+LA +GKLCPQ
Sbjct:  398 HRVTQFGFFGSLLNCGEKLKAFSLVNCLSIRDLTTGLPASSHCSALRSLSIRNCPGFGDANLAAIGKLCPQ 468          

HSP 3 Score: 63.929 bits (154), Expect = 2.860e-49
Identity = 32/69 (46.38%), Postives = 44/69 (63.77%), Query Frame = 2
Query:  197 GSCAHSVQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHRETLELLNLDGC 403
            G     ++ +DL GL GIT+ G   L++S    LVK+N SGC NLTD V+ A+   +  TLE+LN+DGC
Sbjct:  463 GKLCPQLEDIDLCGLKGITESGFLHLIQS---SLVKINFSGCSNLTDRVISAITARNGWTLEVLNIDGC 528          
BLAST of FC931190 vs. ExPASy Swiss-Prot
Match: EBF2_ARATH (EIN3-binding F-box protein 2 OS=Arabidopsis thaliana GN=EBF2 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.924e-47
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 2
Query:  197 GSCAHSVQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHRETLELLNLDGCRKM 412
            G   H +Q V+L GL G+TD G+  LL+S   GLVKVNLS C+N++D  V A++  H  TLE LNLDGC+ +
Sbjct:  454 GKFCHQLQDVELCGLNGVTDAGVRELLQSNNVGLVKVNLSECINVSDNTVSAISVCHGRTLESLNLDGCKNI 525          

HSP 2 Score: 76.6406 bits (187), Expect = 1.924e-47
Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 1
Query:    1 NRVSQSWILGVVSYSASKLKSLTLVKCMGIKDMATEMPMLSPNCS-LRSLSIRNCPGFGNASLAMLGKLCPQ 213
            +R++Q  ++G +    SKLK+ +L  C+GI D  +E  + SP+CS LRSLSIR CPGFG+ASLA LGK C Q
Sbjct:  388 HRINQFGLMGFLMNCGSKLKAFSLANCLGISDFNSESSLPSPSCSSLRSLSIRCCPGFGDASLAFLGKFCHQ 459          

HSP 3 Score: 76.6406 bits (187), Expect = 1.924e-47
Identity = 38/76 (50.00%), Postives = 54/76 (71.05%), Query Frame = 3
Query:  414 TDASLVAIGNNCMFLSYLDVSKCAITDMGISAL-SHAEQLNLQVLSLSRCSEVSNKSMPALKKLGKTLVGLNLQYC 638
            T+ASLVA+  NC  ++ LD+S   ++D GI AL S    LNLQVLS+  CS +++KS   ++KLG+TL+GLN+Q C
Sbjct:  526 TNASLVAVAKNCYSVNDLDISNTLVSDHGIKALASSPNHLNLQVLSIGGCSSITDKSKACIQKLGRTLLGLNIQRC 601          
BLAST of FC931190 vs. ExPASy Swiss-Prot
Match: FBL5_ARATH (F-box/LRR-repeat protein 5 OS=Arabidopsis thaliana GN=FBL5 PE=2 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 8.608e-11
Identity = 30/78 (38.46%), Postives = 43/78 (55.13%), Query Frame = 2
Query:  170 LEMLALPCWGSCAHSVQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHRETLELLNLDGC 403
            LE  A+    +  H +Q +DLS    ITD  ++ L   C   L K+NLSGC + +D  +  L R  R+ L++LNL GC
Sbjct:  104 LEDNAVEAIANHCHELQDLDLSKSSKITDHSLYSLARGC-TNLTKLNLSGCTSFSDTALAHLTRFCRK-LKILNLCGC 179          

HSP 2 Score: 38.891 bits (89), Expect = 8.608e-11
Identity = 27/79 (34.18%), Postives = 44/79 (55.70%), Query Frame = 3
Query:  414 TDASLVAIGNNCMFLSYLDVSKCA-ITDMGISALSHAEQLNLQVLSLSRCSEVSNKSMPALKKLGKTLVGLNLQYCYSI 647
            +D +L AIG NC  L  L++  C  I+D G+ +L++    +L+ L L  C  ++++S+ AL      L  L L YC +I
Sbjct:  184 SDNTLQAIGENCNQLQSLNLGWCENISDDGVMSLAYGCP-DLRTLDLCSCVLITDESVVALANRCIHLRSLGLYYCRNI 261          
The following BLAST results are available for this feature:
BLAST of FC931190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
EBF1_ARATH2.860e-4960.26EIN3-binding F-box protein 1 OS=Arabidopsis thalia... [more]
EBF2_ARATH1.924e-4751.39EIN3-binding F-box protein 2 OS=Arabidopsis thalia... [more]
FBL5_ARATH8.608e-1138.46F-box/LRR-repeat protein 5 OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionC34102D11EF PostHarvP1 Citrus clementina cDNA clone C34102D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931190 ID=FC931190; Name=FC931190; organism=Citrus clementina; type=EST; length=649bp
AACAGGGTTAGCCAATCATGGATCCTTGGTGTTGTATCCTACAGTGCATC
AAAGTTGAAATCTCTCACCCTCGTGAAGTGTATGGGGATTAAGGATATGG
CAACGGAAATGCCTATGCTCTCTCCTAACTGTTCTCTTCGTTCCTTGTCC
ATACGAAACTGCCCTGGATTTGGAAATGCTAGCCTTGCCATGTTGGGGAA
GCTGTGCCCACAGCGTTCAGCATGTAGACTTGAGTGGGCTATATGGAATA
ACAGATGTTGGGATTTTCCCACTTTTGGAAAGTTGCAAAGCAGGACTTGT
GAAGGTGAATCTTAGTGGGTGCTTGAATCTGACAGATGAAGTAGTTTTGG
CCTTGGCTAGGCTACACAGAGAAACCCTCGAACTGTTGAACCTTGATGGT
TGCAGGAAGATGTACAGATGCAAGTTTGGTTGCAATTGGAAACAACTGTA
TGTTCCTCAGTTATCTGGATGTCTCGAAGTGTGCAATCACTGATATGGGC
ATTTCTGCCCTATCTCATGCAGAGCAGCTCAATTTACAAGTCCTTTCCTT
GTCAAGATGCTCTGAAGTATCAAACAAGAGCATGCCTGCCTTGAAGAAAT
TAGGCAAGACTCTGGTGGGATTAAATCTCCAATACTGCTACTCAATTAA
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