FC931196

Overview
NameFC931196
Unique NameFC931196
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931196 vs. ExPASy Swiss-Prot
Match: AGO4B_ORYSJ (Protein argonaute 4B OS=Oryza sativa subsp. japonica GN=AGO4B PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.787e-77
Identity = 76/106 (71.70%), Postives = 94/106 (88.68%), Query Frame = 3
Query:    3 LSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLSN 320
            LS++ C EQMFSL+Q+N   ++G+V E+E+TVYDYFV N+ I+LRYSG+LPCINVGKPKRPTY P+ELC L+ LQRYTKAL+ LQR+SLVEKSRQKPQERMSVL++
Sbjct:  326 LSDRNCNEQMFSLRQRN--GNNGDVDEVEVTVYDYFVKNKGIELRYSGNLPCINVGKPKRPTYFPIELCSLIPLQRYTKALSTLQRSSLVEKSRQKPQERMSVLND 429          

HSP 2 Score: 149.443 bits (376), Expect = 1.787e-77
Identity = 68/104 (65.38%), Postives = 85/104 (81.73%), Query Frame = 2
Query:  404 ALKLSKYDNEPMLRSFGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARCDIRSLVRDLIKCGENEGILIDQPFDVF 715
            AL+ S YD++PMLR+ GISI+ NF QVEGRVL  P+LK GNGED  PRNGRWNFNNKKL+Q   +++WAVVNFSARCD+R+L+RDLI+    +GI + +PFDVF
Sbjct:  430 ALRHSNYDSDPMLRASGISIAQNFTQVEGRVLQPPKLKAGNGEDIFPRNGRWNFNNKKLIQTCSVDKWAVVNFSARCDVRNLIRDLIRNASAKGIQMAEPFDVF 533          
BLAST of FC931196 vs. ExPASy Swiss-Prot
Match: AGO4A_ORYSJ (Protein argonaute 4A OS=Oryza sativa subsp. japonica GN=AGO4A PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.796e-77
Identity = 78/107 (72.90%), Postives = 92/107 (85.98%), Query Frame = 3
Query:    3 LSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLSNV 323
            LSE+ C EQMF+LKQ+N    DGE + +E++VY+YFV NR I+LRYSGD PCINVGKPKRPTY P+ELC LV LQRYTKAL+ LQR+SLVEKSRQKP+ERMSVLS+V
Sbjct:  319 LSERNCYEQMFTLKQRN---GDGEPEGVEVSVYEYFVKNRGIELRYSGDFPCINVGKPKRPTYFPIELCSLVPLQRYTKALSTLQRSSLVEKSRQKPEERMSVLSDV 422          

HSP 2 Score: 148.288 bits (373), Expect = 8.796e-77
Identity = 70/107 (65.42%), Postives = 83/107 (77.57%), Query Frame = 2
Query:  392 VFLKALKLSKYDNEPMLRSFGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARCDIRSLVRDLIKCGENEGILIDQPFDV 712
            V    LK S YD+EPML S GISI+  F QV GRVL AP+LK GNGED   RNGRWNFNNK+L++ + IE+WAVVNFSARC+IR LVRD+IKCG  +GI ++ PFDV
Sbjct:  418 VLSDVLKRSNYDSEPMLNSCGISIARGFTQVAGRVLQAPKLKAGNGEDLFARNGRWNFNNKRLIKASSIEKWAVVNFSARCNIRDLVRDIIKCGGMKGIKVEDPFDV 524          
BLAST of FC931196 vs. ExPASy Swiss-Prot
Match: AGO15_ORYSJ (Protein argonaute 15 OS=Oryza sativa subsp. japonica GN=AGO15 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.883e-58
Identity = 64/107 (59.81%), Postives = 77/107 (71.96%), Query Frame = 3
Query:    3 LSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLSNV 323
            LSE  C  Q F +K+KN       V+E  +TV++Y+  N  IDL+ S   PC+NVGKPKRPTYIPLELC LV LQRY KAL+ LQR++LVE+SRQ PQERM VLS V
Sbjct:  309 LSEDTCYSQTFQIKRKNGNGGSDTVEE--VTVFEYYRKNWKIDLKGSAHFPCLNVGKPKRPTYIPLELCHLVPLQRYKKALSTLQRSTLVERSRQNPQERMFVLSGV 413          

HSP 2 Score: 120.939 bits (302), Expect = 1.883e-58
Identity = 57/109 (52.29%), Postives = 74/109 (67.89%), Query Frame = 2
Query:  389 FVFLKALKLSKYDNEPMLRSFGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARCDIRSLVRDLIKCGENEGILIDQPFDVF 715
            FV    L+ S Y++ PMLR  GISI+  F QV  RVLPAP+LK G+GED   RNGRWNFN  +L+QP +++RW VVNFSA+C+   L + LI CG  +G+ +D    VF
Sbjct:  408 FVLSGVLRDSDYNSVPMLRECGISIAQEFTQVAARVLPAPKLKSGDGEDIFARNGRWNFNKNRLIQPKRVQRWVVVNFSAQCNAHHLAQRLIHCGNLKGLPVDPEDHVF 516          
BLAST of FC931196 vs. ExPASy Swiss-Prot
Match: AGO16_ORYSJ (Protein argonaute 16 OS=Oryza sativa subsp. japonica GN=AGO16 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 7.719e-57
Identity = 58/105 (55.24%), Postives = 76/105 (72.38%), Query Frame = 2
Query:  392 VFLKALKLSKYDNEPMLRSFGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARCDIRSLVRDLIKCGENEGILIDQPF 706
            V   A+K ++YD++P+L S GI I     +V+GRVL AP L  GN ED  P  GRWN+NNK+L +P KIERWA+VNFSARCD+  + RDLI CG  +GI+I++PF
Sbjct:  396 VVTDAVKNNRYDDDPILSSCGIKIEKQLTRVDGRVLSAPTLVVGNSEDCIPNRGRWNYNNKRLFEPVKIERWAIVNFSARCDMSRISRDLINCGRTKGIIIERPF 500          

HSP 2 Score: 112.464 bits (280), Expect = 7.719e-57
Identity = 58/106 (54.72%), Postives = 80/106 (75.47%), Query Frame = 3
Query:    3 LSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLSN 320
            LS++ C  Q F +K   V++   E + +EITV +YF  ++ +DL     LPC++VGKPKRP Y+P+ELC +VSLQRYTKAL++ QRA+LVEKSRQKPQERM V+++
Sbjct:  299 LSDEPCSRQTFPMK---VRNGSSEGETVEITVQEYF-KSKQVDLTMPY-LPCLDVGKPKRPNYVPIELCHMVSLQRYTKALSSQQRATLVEKSRQKPQERMRVVTD 399          
BLAST of FC931196 vs. ExPASy Swiss-Prot
Match: AGO1B_ORYSJ (Protein argonaute 1B OS=Oryza sativa subsp. japonica GN=AGO1B PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 1.906e-24
Identity = 33/79 (41.77%), Postives = 45/79 (56.96%), Query Frame = 2
Query:  398 LKALKLSKYDNEPMLRSFGISISTNFAQVEGRVLPAPRLKF---GNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFS 625
            L+ +  + Y  +   + FGI I    A VE RVLP PRLK+   G  +D  PR G+WN  NKK+V   ++  WA +NFS
Sbjct:  602 LRTVSHNAYHEDQYAQEFGIKIDERLASVEARVLPPPRLKYHDSGREKDVLPRVGQWNMMNKKMVNGGRVNNWACINFS 680          

HSP 2 Score: 64.6994 bits (156), Expect = 1.906e-24
Identity = 32/81 (39.51%), Postives = 51/81 (62.96%), Query Frame = 3
Query:   60 DDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQER 302
            DD G V+    TV  YF+      ++++  LPC+ VG  +RP Y+P+E+C++V  QRY+K L   Q  +L++ + Q+PQER
Sbjct:  522 DDRGTVK----TVVQYFLETYGFSIQHT-TLPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNEKQITALLKVTCQRPQER 597          
BLAST of FC931196 vs. ExPASy Swiss-Prot
Match: AGO1A_ORYSJ (Protein argonaute 1A OS=Oryza sativa subsp. japonica GN=AGO1A PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.039e-23
Identity = 36/94 (38.30%), Postives = 49/94 (52.13%), Query Frame = 2
Query:  398 LKALKLSKYDNEPMLRSFGISISTNFAQVEGRVLPAPRLKF---GNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARCD---IRSLVRDL 661
            L+ +  + Y  +P  + FGI I    A VE RVLP P LK+   G  +D  PR G+WN  NKK+V   ++  W  +NFS        RS  R+L
Sbjct:  565 LQTVHHNAYHQDPYAQEFGIRIDERLASVEARVLPPPWLKYHDSGREKDVLPRIGQWNMMNKKMVNGGRVNNWTCINFSRHVQDNAARSFCREL 658          

HSP 2 Score: 63.1586 bits (152), Expect = 2.039e-23
Identity = 33/89 (37.08%), Postives = 55/89 (61.80%), Query Frame = 3
Query:   60 DDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQER-MSVLSNV 323
            D+ G V+    TV  YF      +++++  LPC+ VG  +RP Y+P+E+C++V  QRY+K L   Q  +L++ + Q+PQER + +L  V
Sbjct:  485 DNHGTVK----TVVQYFQETYGFNIKHT-TLPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNEKQITALLKVTCQRPQERELDILQTV 568          
BLAST of FC931196 vs. ExPASy Swiss-Prot
Match: PINH_ARATH (Protein PINHEAD OS=Arabidopsis thaliana GN=At5g43810 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.458e-23
Identity = 34/79 (43.04%), Postives = 50/79 (63.29%), Query Frame = 2
Query:  398 LKALKLSKYDNEPMLRSFGISISTNFAQVEGRVLPAPRLKF---GNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFS 625
            L+ ++ + YD +P  + FG++IS   A VE R+LPAP LK+   G  +D  P+ G+WN  NKK++    + RWA VNFS
Sbjct:  483 LRTVQHNAYDQDPYAKEFGMNISEKLASVEARILPAPWLKYHENGKEKDCLPQVGQWNMMNKKMINGMTVSRWACVNFS 561          

HSP 2 Score: 55.4546 bits (132), Expect = 3.458e-23
Identity = 25/70 (35.71%), Postives = 45/70 (64.29%), Query Frame = 3
Query:   93 TVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQER 302
            +V +YF       ++++  LPC+ VG  K+ +Y+P+E C++V  QRYTK L   Q  +L++ + Q+P++R
Sbjct:  410 SVIEYFQEMYGFTIQHT-HLPCLQVGNQKKASYLPMEACKIVEGQRYTKRLNEKQITALLKVTCQRPRDR 478          
BLAST of FC931196 vs. ExPASy Swiss-Prot
Match: AGOL_ARATH (Argonaute-like protein At2g27880 OS=Arabidopsis thaliana GN=At2g27880 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.498e-23
Identity = 35/93 (37.63%), Postives = 54/93 (58.06%), Query Frame = 2
Query:  398 LKALKLSKYDNEPMLRSFGISISTNFAQVEGRVLPAPRLKF---GNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARCDIRSLVRDLIK 667
            +K L +    N+ + + FG+S++T  A +E RVLP P LK+   G  +  +PR G+WN  +KK+V   K+  W  V+FS R D R L ++  K
Sbjct:  502 IKNLVVKNNYNDDLSKEFGMSVTTQLASIEARVLPPPMLKYHDSGKEKMVNPRLGQWNMIDKKMVNGAKVTSWTCVSFSTRID-RGLPQEFCK 593          

HSP 2 Score: 61.2326 bits (147), Expect = 4.498e-23
Identity = 34/101 (33.66%), Postives = 53/101 (52.48%), Query Frame = 3
Query:   21 KEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLSNV 323
            +E  F+L+ K+ K           TV  YF    N  ++Y   LP I  G   RP Y+P+ELC++   QRYTK L   Q  +L++ + Q+P +R + + N+
Sbjct:  417 RELRFTLEDKSEK-----------TVVQYFAEKYNYRVKYQA-LPAIQTGSDTRPVYLPMELCQIDEGQRYTKRLNEKQVTALLKATCQRPPDRENSIKNL 505          
BLAST of FC931196 vs. ExPASy Swiss-Prot
Match: AGO1D_ORYSJ (Protein argonaute 1D OS=Oryza sativa subsp. japonica GN=AGO1D PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.288e-22
Identity = 33/73 (45.21%), Postives = 44/73 (60.27%), Query Frame = 2
Query:  416 SKYDNEPMLRSFGISISTNFAQVEGRVLPAPRLKF---GNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFS 625
            + Y  +P  + FGI IS   A VE R+LPAPRLK+   G  +D  PR G+WN  NKK+V   ++  W  VNF+
Sbjct:  531 NSYHEDPYAKEFGIKISERLALVEARILPAPRLKYNETGREKDCLPRVGQWNMMNKKMVNGGRVRSWICVNFA 603          

HSP 2 Score: 57.3806 bits (137), Expect = 1.288e-22
Identity = 26/70 (37.14%), Postives = 45/70 (64.29%), Query Frame = 3
Query:   93 TVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQER 302
            +V  YF       ++++  LPC+ VG  +RP Y+P+E+C++V  QRY+K L   Q  +L+E++ Q+P +R
Sbjct:  452 SVVQYFQETYGFAIQHTY-LPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNQNQIRALLEETCQRPHDR 520          
BLAST of FC931196 vs. ExPASy Swiss-Prot
Match: PNH1_ORYSJ (Protein argonaute PNH1 OS=Oryza sativa subsp. japonica GN=PHN1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.250e-22
Identity = 32/79 (40.51%), Postives = 49/79 (62.03%), Query Frame = 2
Query:  398 LKALKLSKYDNEPMLRSFGISISTNFAQVEGRVLPAPRLKF---GNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFS 625
            L+ ++ + Y+ +P  + FGI+IS     VE RVLPAP LK+   G  ++  P+ G+WN  NKK++   K+  WA +NFS
Sbjct:  478 LQTVQQNGYEQDPYAKEFGINISEKLTSVEARVLPAPWLKYHDTGKEKECLPQVGQWNMVNKKVINGCKVNHWACINFS 556          

HSP 2 Score: 55.4546 bits (132), Expect = 6.250e-22
Identity = 28/79 (35.44%), Postives = 48/79 (60.76%), Query Frame = 3
Query:   93 TVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQER-MSVLSNVK 326
            +V +YF       +++   LPC+ VG  K+  Y+P+E C++V  QRYTK L   Q  SL++ + ++P+E+ M +L  V+
Sbjct:  405 SVVEYFKEMYGFTIQHP-HLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITSLLKVTCRRPREQEMDILQTVQ 482          
The following BLAST results are available for this feature:
BLAST of FC931196 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
AGO4B_ORYSJ1.787e-7771.70Protein argonaute 4B OS=Oryza sativa subsp. japoni... [more]
AGO4A_ORYSJ8.796e-7772.90Protein argonaute 4A OS=Oryza sativa subsp. japoni... [more]
AGO15_ORYSJ1.883e-5859.81Protein argonaute 15 OS=Oryza sativa subsp. japoni... [more]
AGO16_ORYSJ7.719e-5755.24Protein argonaute 16 OS=Oryza sativa subsp. japoni... [more]
AGO1B_ORYSJ1.906e-2441.77Protein argonaute 1B OS=Oryza sativa subsp. japoni... [more]
AGO1A_ORYSJ2.039e-2338.30Protein argonaute 1A OS=Oryza sativa subsp. japoni... [more]
PINH_ARATH3.458e-2343.04Protein PINHEAD OS=Arabidopsis thaliana GN=At5g438... [more]
AGOL_ARATH4.498e-2337.63Argonaute-like protein At2g27880 OS=Arabidopsis th... [more]
AGO1D_ORYSJ1.288e-2245.21Protein argonaute 1D OS=Oryza sativa subsp. japoni... [more]
PNH1_ORYSJ6.250e-2240.51Protein argonaute PNH1 OS=Oryza sativa subsp. japo... [more]

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Properties
Property NameValue
Genbank descriptionC34102E06EF PostHarvP1 Citrus clementina cDNA clone C34102E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931196 ID=FC931196; Name=FC931196; organism=Citrus clementina; type=EST; length=716bp
GACTGAGTGAGAAACTGTGTAAAGAGCAAATGTTTTCACTGAAGCAGAAG
AATGTTAAGGATGATGATGGTGAAGTGCAGGAACTGGAAATAACTGTTTA
TGACTATTTTGTTAATAATCGCAATATAGATTTGCGATATTCTGGAGATC
TACCATGCATCAATGTTGGTAAACCAAAGCGGCCGACCTATATTCCTCTT
GAGCTTTGTGAATTGGTGTCCTTACAACGTTACACGAAAGCCCTGACCAA
TCTACAGAGAGCATCACTAGTGGAGAAGTCAAGGCAGAAGCCACAAGAAA
GGATGAGTGTTTTGTCTAATGTTAAGTGTCTTTTCAAGCTATTGACTTTT
CAGTCGCAATGTTTCTTTGTCTGCTGAAGCTTACAGCATTTGTTTTCTTG
AAGGCTCTGAAACTTAGCAAGTATGATAATGAGCCAATGCTGCGTTCATT
TGGCATTTCTATCAGTACTAACTTTGCTCAAGTGGAAGGTCGTGTGCTAC
CAGCTCCTCGGTTAAAATTTGGCAACGGAGAAGATTTTTCCCCACGAAAT
GGGCGGTGGAATTTCAATAACAAGAAATTAGTGCAGCCAACTAAGATAGA
ACGTTGGGCCGTGGTAAACTTTTCTGCACGTTGTGACATTCGTAGCCTTG
TCCGAGATCTGATCAAATGTGGGGAAAATGAAGGAATTCTCATAGATCAG
CCATTTGATGTGTTTG
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