FC931198

Overview
NameFC931198
Unique NameFC931198
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15287 contig Ccv1_Contig15287:1..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931198 vs. ExPASy Swiss-Prot
Match: YKM8_SCHPO (Zinc-type alcohol dehydrogenase-like protein PB24D3.08c OS=Schizosaccharomyces pombe GN=SPAPB24D3.08c PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 8.488e-51
Identity = 111/224 (49.55%), Postives = 147/224 (65.62%), Query Frame = 2
Query:   20 QEYIAFGEQELVRIQKLDNPLGIEDIRVFLGPLGMPGLTAYSSLYEIGKPKKGETIFVSAASGAVGQLVGQLAKHEGLRVIGSVGSDEKLEYITKTLNFDGGFNYKTEKPADALARLAPEGIDIYYENVGGEHLDAALDAMNNFGRVVVCGLISQYNS-DPYPIKKINNVLVKRITMRGFIVTDKGFADVYSKEHQEKVQKWIKDGSFKVLIHETVGIDTLPRA 688
            +EY    +Q L  +Q ++NP  +  I  F+G LGMP  TAY  L  IGKPK GETI++SAASGAVGQ+ GQLAK  GL V+GSVGSDEK + I     +D  FNYK E P  AL RL P+GIDIY+ENVGGE +DA L+ MN  GR++ CG ISQYN+ +PY +K +  VLVK +T++GFIV +      Y +++ E++ K I +G  K       G+++ P A
Sbjct:  110 EEYTFVSKQALGFLQPINNPYKLPLID-FVGSLGMPSQTAYCGLKHIGKPKAGETIYISAASGAVGQMAGQLAKAMGLHVVGSVGSDEKFK-ICLDSGYDSVFNYKKESPFKALPRLCPKGIDIYFENVGGETMDAVLENMNLQGRIIFCGAISQYNNPNPYRVKNLGMVLVKSLTIQGFIVAN--ILPQYQEQYFEEMPKLIAEGKIKYKCDVYDGLESAPEA 329          
BLAST of FC931198 vs. ExPASy Swiss-Prot
Match: P1_ARATH (Probable NADP-dependent oxidoreductase P1 OS=Arabidopsis thaliana GN=P1 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.090e-45
Identity = 103/213 (48.36%), Postives = 134/213 (62.91%), Query Frame = 2
Query:   56 RIQKLDNPLGIEDIRVFLGPLGMPGLTAYSSLYEIGKPKKGETIFVSAASGAVGQLVGQLAKHEGLRVIGSVGSDEKLEYITKTLNFDGGFNYKTEKP-ADALARLAPEGIDIYYENVGGEHLDAALDAMNNFGRVVVCGLISQYN-SDPYPIKKINNVLVKRITMRGFIVTDKGFADVYSKEHQEKVQKWIKDGSFKVLIHETVGIDTLPRA 688
            +IQ  D PL       + G LGMPG+TAY+  YE+  PK+GET++VSAASGAVGQLVGQLAK  G  V+GS GS EK++ +     FD  FNYK E     AL R  P GIDIY+ENVGG+ LDA L  MN  GR+ VCG+ISQYN  +   +  ++N++ KRI ++GF+V+D  F D YSK   E V   I++G    +     G++  P A
Sbjct:  121 KIQHTDVPLSY-----YTGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVGGKMLDAVLVNMNMHGRIAVCGMISQYNLENQEGVHNLSNIIYKRIRIQGFVVSD--FYDKYSK-FLEFVLPHIREGKITYVEDVADGLEKAPEA 325          
BLAST of FC931198 vs. ExPASy Swiss-Prot
Match: P2_ARATH (Probable NADP-dependent oxidoreductase P2 OS=Arabidopsis thaliana GN=P2 PE=2 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 3.454e-44
Identity = 102/213 (47.89%), Postives = 133/213 (62.44%), Query Frame = 2
Query:   56 RIQKLDNPLGIEDIRVFLGPLGMPGLTAYSSLYEIGKPKKGETIFVSAASGAVGQLVGQLAKHEGLRVIGSVGSDEKLEYITKTLNFDGGFNYKTEKP-ADALARLAPEGIDIYYENVGGEHLDAALDAMNNFGRVVVCGLISQYN-SDPYPIKKINNVLVKRITMRGFIVTDKGFADVYSKEHQEKVQKWIKDGSFKVLIHETVGIDTLPRA 688
            +IQ  D PL       + G LGMPG+TAY+  YE+  PKKGET++VSAASGAVGQLVGQ AK  G  V+GS GS EK++ +     FD  FNYK E   + AL R  P+GID+Y+ENVGG+ LDA L  MN  GR+ VCG+ISQYN  +   +  ++N++ KRI ++GF+V D  F D Y K   E V   IK+G    +     G++  P A
Sbjct:  119 KIQHTDVPLSY-----YTGLLGMPGMTAYAGFYEVCSPKKGETVYVSAASGAVGQLVGQFAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLSAALKRCFPKGIDMYFENVGGKMLDAVLLNMNPHGRIAVCGMISQYNLENQEGVHNLSNIIYKRIRIQGFVVAD--FYDKYPK-FLELVLPRIKEGKITYVEDVADGLEKAPEA 323          
BLAST of FC931198 vs. ExPASy Swiss-Prot
Match: YFMJ_BACSU (Putative NADP-dependent oxidoreductase yfmJ OS=Bacillus subtilis GN=yfmJ PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.963e-41
Identity = 97/234 (41.45%), Postives = 143/234 (61.11%), Query Frame = 2
Query:    2 IGQVPIQEYIAFGEQELVRIQKLDNPLGIEDIRVFLGPLGMPGLTAYSSLYEIGKPKKGETIFVSAASGAVGQLVGQLAKHEGLRVIGSVGSDEKLEYITKTLNFDGGFNYKT-EKPADALARLAPEGIDIYYENVGGEHLDAALDAMNNFGRVVVCGLISQYNSDPYPI---KKINNVLVK-RITMRGFIVTDKGFADVYSKEHQEKVQKWIKDGSFKVLIHETVGIDTLPRA 688
            IG +  QE+ A  E  L   +K+D  L       +LG LGM GLTAY  L +IG+PK+GET+ VS A+GAVG  VGQ+AK +G RV+G  GSDEK++Y+ + L FD   NYKT +    AL    P+G+D+Y++NVGG   DA ++ +N F R+ VCG IS YN++        ++ + L+K +  M+GFIV+D  ++D +S E  +++ +W+K G        T G + +P A
Sbjct:   93 IGNLSWQEFSAVSESAL---RKIDTSLA--PASAYLGILGMTGLTAYFGLLDIGRPKEGETVVVSGAAGAVGSTVGQIAKIKGARVVGIAGSDEKIDYLKQELQFDEAINYKTADDIQKALQNACPDGVDVYFDNVGGPISDAVMNLLNEFARIPVCGAISSYNAESEADDMGPRVQSKLIKTKSLMQGFIVSD--YSDRFS-EGAKQLAEWLKAGKLHYEETITEGFENIPDA 318          
BLAST of FC931198 vs. ExPASy Swiss-Prot
Match: PTGR1_CAVPO (Prostaglandin reductase 1 OS=Cavia porcellus GN=Ptgr1 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.310e-38
Identity = 85/197 (43.15%), Postives = 124/197 (62.94%), Query Frame = 2
Query:  107 LGPLGMPGLTAYSSLYEIGKPKKGETIFVSAASGAVGQLVGQLAKHEGLRVIGSVGSDEKLEYITKTLNFDGGFNYKT-EKPADALARLAPEGIDIYYENVGGEHLDAALDAMNNFGRVVVCGLISQYN--SDPYPIKKINNVLVKRITMRGFIVTDKGFADVYSKEHQEKVQKWIKDGSFKVLIHETVGIDTLPRA 688
            LG +GMPGLTAY  L E+   K GET+ VSAA+GAVG +VGQ+AK +G +V+G+ GSDEK+ Y+ K + FD  FNYKT     +AL + +P+G D Y++NVGGE L+  L  M +FG++ +CG IS YN      P     +++ K++ + GFIV  +   DV  K  ++ + KW+ +G  +   H T G + +P A
Sbjct:  119 LGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL-KQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVY-RWQGDVREKALRD-LMKWVLEGKIQYHEHVTKGFENMPAA 312          
BLAST of FC931198 vs. ExPASy Swiss-Prot
Match: PTGR1_MOUSE (Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1 PE=2 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.190e-36
Identity = 88/197 (44.67%), Postives = 125/197 (63.45%), Query Frame = 2
Query:  107 LGPLGMPGLTAYSSLYEIGKPKKGETIFVSAASGAVGQLVGQLAKHEGLRVIGSVGSDEKLEYITKTLNFDGGFNYKTEKP-ADALARLAPEGIDIYYENVGGEHLDAALDAMNNFGRVVVCGLISQYN-SDPYPIKKINNVLV-KRITMRGFIVTDKGFADVYSKEHQEKVQKWIKDGSFKVLIHETVGIDTLPRA 688
            LG +GMPGLTAY  L +I   K GET+ VSAA+GAVG +VGQ+AK +G +V+G+ GSDEK+ Y+ K L FD  FNYKT K   +AL   +P+G D Y++NVGGE  +A +  M  FGR+ +CG ISQYN + P P      V++ +++ M GFIV ++   +V  K   E +  W+ +G  +   + T G + +P A
Sbjct:  119 LGTVGMPGLTAYFGLLDICGVKGGETVMVSAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKVAYL-KKLGFDVAFNYKTVKSLEEALRTASPDGYDCYFDNVGGEFSNAVILQMKTFGRIAICGAISQYNRTGPCPQGPAPEVVIYQQLRMEGFIV-NRWQGEVRQKALTE-LMNWVSEGKVQCHEYVTEGFEKMPAA 312          
BLAST of FC931198 vs. ExPASy Swiss-Prot
Match: YNCB_ECOLI (Putative NADP-dependent oxidoreductase yncB OS=Escherichia coli (strain K12) GN=yncB PE=3 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 2.030e-36
Identity = 82/199 (41.21%), Postives = 118/199 (59.30%), Query Frame = 2
Query:  107 LGPLGMPGLTAYSSLYEIGKPKKGETIFVSAASGAVGQLVGQLAKHEGLRVIGSVGSDEKLEYITKTLNFDGGFNYKTEKPADALARLAPEGIDIYYENVGGEHLDAALDAMNNFGRVVVCGLISQYNSDPYPIKK------INNVLVKRITMRGFIVTDKGFADVYSKEHQEKVQKWIKDGSFKVLIHETVGIDTLPR 685
            LG LGMPG TAY  L +IG+PK+GET+ V+AA+G VG  VGQ+ K +G RV+G  G  EK  + T+ L FD   ++  +  A+ LA+  P+GIDIYYENVGG+  DA L  +N   R+ VCGL+S YN+   P         +  VL KRI ++GFI+       ++  E Q ++ +W+K+         T G++  P+
Sbjct:  127 LGVLGMPGFTAYMGLLDIGQPKEGETLVVAAATGPVGATVGQIGKLKGCRVVGVAGGAEKCRHATEVLGFDVCLDHHADDFAEQLAKACPKGIDIYYENVGGKVFDAVLPLLNTSARIPVCGLVSSYNATELPPGPDRLPLLMATVLKKRIRLQGFIIAQDYGHRIH--EFQREMGQWVKEDKIHYREEITDGLENAPQ 323          
BLAST of FC931198 vs. ExPASy Swiss-Prot
Match: PTGR1_RAT (Prostaglandin reductase 1 OS=Rattus norvegicus GN=Ptgr1 PE=2 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 5.906e-36
Identity = 86/197 (43.65%), Postives = 124/197 (62.94%), Query Frame = 2
Query:  107 LGPLGMPGLTAYSSLYEIGKPKKGETIFVSAASGAVGQLVGQLAKHEGLRVIGSVGSDEKLEYITKTLNFDGGFNYKTEKP-ADALARLAPEGIDIYYENVGGEHLDAALDAMNNFGRVVVCGLISQYN-SDPYPIKKINNVLV-KRITMRGFIVTDKGFADVYSKEHQEKVQKWIKDGSFKVLIHETVGIDTLPRA 688
            LG +GMPGLTAY  L +I   K GET+ V+AA+GAVG +VGQ+AK +G +V+G+ GSDEK+ Y+ K L FD  FNYKT K   +AL   +P+G D Y++NVGGE  +  +  M  FGR+ +CG ISQYN + P P      V++ +++ M GFIVT +   +V  K   + +  W+ +G  +   + T G + +P A
Sbjct:  119 LGTVGMPGLTAYFGLLDICGLKGGETVLVNAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKVAYL-KKLGFDVAFNYKTVKSLEEALRTASPDGYDCYFDNVGGEFSNTVILQMKTFGRIAICGAISQYNRTGPCPPGPSPEVIIYQQLRMEGFIVT-RWQGEVRQKALTD-LMNWVSEGKIRYHEYITEGFEKMPAA 312          
BLAST of FC931198 vs. ExPASy Swiss-Prot
Match: PTGR1_BOVIN (Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.906e-36
Identity = 86/199 (43.22%), Postives = 123/199 (61.81%), Query Frame = 2
Query:  107 LGPLGMPGLTAYSSLYEIGKPKKGETIFVSAASGAVGQLVGQLAKHEGLRVIGSVGSDEKLEYITKTLNFDGGFNYKTEKP-ADALARLAPEGIDIYYENVGGEHLDAALDAMNNFGRVVVCGLISQYNS----DPYPIKKINNVLVKRITMRGFIVTDKGFADVYSKEHQEKVQKWIKDGSFKVLIHETVGIDTLPRA 688
            LG +GMPGLTAY  L +I   K GET+ VSAA+GAVG +VGQ+AK +G +V+G+ GSDEK+ ++ K   FD   NYKT K   +AL   APEG D Y++NVGGE  + A+  M  FGR+ +CG IS YN      P P  +I  ++ K + ++GF+V  +   +V  K  ++ + KW+ +G  +   H T G + +P A
Sbjct:  119 LGTVGMPGLTAYFGLLDICGVKGGETVLVSAAAGAVGSIVGQIAKLKGCKVVGTAGSDEKVAWLKKH-GFDVALNYKTVKSLEEALKEAAPEGYDCYFDNVGGEFSNVAITQMKKFGRIAICGAISVYNRTSPLSPGPSPEI--IIFKELHLQGFVVY-RWQGEVRQKALRD-LLKWVSEGKIQYHEHVTEGFENMPAA 312          
BLAST of FC931198 vs. ExPASy Swiss-Prot
Match: PTGR1_PIG (Prostaglandin reductase 1 OS=Sus scrofa GN=PTGR1 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.244e-35
Identity = 85/197 (43.15%), Postives = 119/197 (60.41%), Query Frame = 2
Query:  107 LGPLGMPGLTAYSSLYEIGKPKKGETIFVSAASGAVGQLVGQLAKHEGLRVIGSVGSDEKLEYITKTLNFDGGFNYKT-EKPADALARLAPEGIDIYYENVGGEHLDAALDAMNNFGRVVVCGLISQYN--SDPYPIKKINNVLVKRITMRGFIVTDKGFADVYSKEHQEKVQKWIKDGSFKVLIHETVGIDTLPRA 688
            LG +GMPGLTAY  L +I   K GET+ V+AA+GAVG +VGQ+AK +G +V+G+ GSDEK+  + K   FD  FNYKT E   + L + +PEG D Y++NVGGE  +A    M  FGR+ +CG IS YN    P P      V+   +  +GFIVT +   +V  K  ++ + KW+ +G  +   H T G + +P A
Sbjct:  119 LGTVGMPGLTAYFGLLDICGLKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVACL-KKYGFDVAFNYKTIESLEETLKKASPEGYDCYFDNVGGEFSNAVTSQMKKFGRIAICGAISTYNRTGPPPPGPPPEVVIYNELCFQGFIVT-RWQGEVRQKALRD-LLKWVSEGKIQYHEHITEGFENMPAA 312          
The following BLAST results are available for this feature:
BLAST of FC931198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
YKM8_SCHPO8.488e-5149.55Zinc-type alcohol dehydrogenase-like protein PB24D... [more]
P1_ARATH9.090e-4548.36Probable NADP-dependent oxidoreductase P1 OS=Arabi... [more]
P2_ARATH3.454e-4447.89Probable NADP-dependent oxidoreductase P2 OS=Arabi... [more]
YFMJ_BACSU7.963e-4141.45Putative NADP-dependent oxidoreductase yfmJ OS=Bac... [more]
PTGR1_CAVPO6.310e-3843.15Prostaglandin reductase 1 OS=Cavia porcellus GN=Pt... [more]
PTGR1_MOUSE1.190e-3644.67Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1... [more]
YNCB_ECOLI2.030e-3641.21Putative NADP-dependent oxidoreductase yncB OS=Esc... [more]
PTGR1_RAT5.906e-3643.65Prostaglandin reductase 1 OS=Rattus norvegicus GN=... [more]
PTGR1_BOVIN5.906e-3643.22Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 P... [more]
PTGR1_PIG2.244e-3543.15Prostaglandin reductase 1 OS=Sus scrofa GN=PTGR1 P... [more]

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Properties
Property NameValue
Genbank descriptionC34102E08EF PostHarvP1 Citrus clementina cDNA clone C34102E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931198 ID=FC931198; Name=FC931198; organism=Citrus clementina; type=EST; length=707bp
CATTGGTCAGGTTCCAATCCAGGAGTACATCGCCTTCGGCGAGCAGGAAC
TGGTCCGCATCCAAAAGCTTGACAACCCCCTCGGCATCGAGGACATTCGT
GTCTTCCTGGGTCCCCTGGGCATGCCCGGTTTGACCGCATACTCATCTTT
GTACGAGATTGGAAAGCCCAAGAAGGGTGAGACCATTTTCGTCTCCGCTG
CCAGTGGAGCCGTCGGCCAGCTGGTCGGCCAGCTCGCCAAGCACGAGGGT
CTGCGCGTCATTGGATCCGTCGGCTCGGACGAGAAGCTCGAGTACATCAC
CAAGACTCTCAACTTCGACGGCGGCTTCAACTACAAGACCGAGAAGCCCG
CCGATGCTCTTGCTCGCCTCGCTCCCGAGGGTATTGACATTTACTACGAG
AACGTCGGTGGAGAGCACCTCGATGCCGCCCTTGATGCCATGAACAACTT
CGGTCGTGTTGTTGTCTGCGGTCTGATCTCCCAGTACAACTCTGACCCTT
ACCCCATCAAGAAAATCAACAATGTCCTCGTCAAGCGTATTACTATGCGC
GGCTTCATCGTCACTGACAAGGGCTTTGCCGATGTTTACTCCAAGGAACA
CCAGGAGAAAGTGCAGAAGTGGATCAAGGATGGCTCGTTCAAGGTGCTCA
TCCACGAAACTGTTGGCATTGACACGCTGCCGAGGGCTTAGTTGGCATCT
TCTACGG
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