FC931200

Overview
NameFC931200
Unique NameFC931200
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8171 contig Ccv1_Contig8171:505..1225. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931200 vs. ExPASy Swiss-Prot
Match: CSN1_ARATH (COP9 signalosome complex subunit 1 OS=Arabidopsis thaliana GN=CSN1 PE=1 SV=2)

HSP 1 Score: 417.927 bits (1073), Expect = 2.664e-116
Identity = 202/240 (84.17%), Postives = 223/240 (92.92%), Query Frame = 1
Query:    1 ENELNAYRTNLIKESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRCAAGLAHLEARKYKLAARKFLEVGPDLGNSYNEVIAAQDVATYGGLCALASFDRAELKSKVIDNVNFRNFLELVPEVRELINDFYSSRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNIALIQYTHPFVSVDLHMMXNAF 720
            ENEL++YRTNLIKESIRMGYNDFGDFYYA G LGDAFK+Y+RTRDYCTT+KHIIHMCM+AILVSIEMGQFTHVTSYV+KAEQ PE LEP+  AKLRCA+GLAHLE +KYKLAARKFL+V P+LGNSYNEVIA QD+ATYGGLCALASFDR+ELK KVIDN+NFRNFLELVP+VRELINDFYSSRYASCL+YL +LK+NLLLDIHLHDHV+TLYDQIR  ALIQYT PFVSVDL  M +AF
Sbjct:  123 ENELSSYRTNLIKESIRMGYNDFGDFYYACGMLGDAFKNYIRTRDYCTTTKHIIHMCMNAILVSIEMGQFTHVTSYVNKAEQNPETLEPMVNAKLRCASGLAHLELKKYKLAARKFLDVNPELGNSYNEVIAPQDIATYGGLCALASFDRSELKQKVIDNINFRNFLELVPDVRELINDFYSSRYASCLEYLASLKSNLLLDIHLHDHVDTLYDQIRKKALIQYTLPFVSVDLSRMADAF 362          
BLAST of FC931200 vs. ExPASy Swiss-Prot
Match: CSN1_DICDI (COP9 signalosome complex subunit 1 OS=Dictyostelium discoideum GN=csn1 PE=1 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 3.083e-72
Identity = 129/240 (53.75%), Postives = 181/240 (75.42%), Query Frame = 1
Query:    1 ENELNAYRTNLIKESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRCAAGLAHLEARKYKLAARKFLEVGPDLGNSYNEVIAAQDVATYGGLCALASFDRAELKSKVIDNVNFRNFLELVPEVRELINDFYSSRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNIALIQYTHPFVSVDLHMMXNAF 720
            E +LN  ++N++K+SIR   ND G+FYY  G   +A K ++RTRDYCTTSKH++ MC + I + ++   +TH  SY++KAEQ+P+ L+ V+ AKLR   GL +L+  +YKLAARKF+E   +  N ++++I+ QD+A YGGLCALA+FDR ELK KVID+  F+N+LELVPE+RELINDFY+++Y SCL YL  +K  LLLDIHL+ HVE LY +IR+ AL+QY  P+ SVD+++M +AF
Sbjct:  112 EQDLNTAKSNMVKDSIRFAQNDLGEFYYKIGDHQNALKCFIRTRDYCTTSKHVLAMCFNIIKLGVDTQNYTHAPSYIAKAEQSPD-LDNVSNAKLRSVNGLYNLDGSRYKLAARKFIETPFEQSNVFSDIISPQDIAYYGGLCALATFDRNELKKKVIDDPMFKNYLELVPELRELINDFYNTKYGSCLKYLDKMKPILLLDIHLYKHVEILYQRIRSKALVQYFSPYQSVDMNIMASAF 350          
BLAST of FC931200 vs. ExPASy Swiss-Prot
Match: CSN1_RAT (COP9 signalosome complex subunit 1 OS=Rattus norvegicus GN=Gps1 PE=1 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.366e-64
Identity = 130/249 (52.21%), Postives = 169/249 (67.87%), Query Frame = 1
Query:    1 ENELNAYRTNLIKESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEP---------VTIAKLRCAAGLAHLEARKYKLAARKFLEVGPDLGNSYNEVIAAQDVATYGGLCALASFDRAELKSKVIDNVNFRNFLELVPEVRELINDFYSSRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNIALIQYTHPFVSVDLHMMXNAF 720
            + +L  Y+ N IKESIR G++D GD Y   G L +A K Y R RDYCT++KH+I+MC++ I VS+ +  ++HV SYVSKAE TPE  E            + KL+CAAGLA L ARKYK AA+ FL    D  + + E+++  +VA YGGLCALA+FDR EL+  VI + +F+ FLEL P+VR++I  FY S+YASCL  L  +K NLLLD++L  HV TLY QIRN ALIQY  P+VS D+H M  AF
Sbjct:  126 DTDLKNYKGNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTSAKHVINMCLNVIKVSVYLQNWSHVLSYVSKAESTPEIAEQRGERDSQTQAILTKLKCAAGLAELAARKYKQAAKCFLLASFDHCD-FPELLSPSNVAVYGGLCALATFDRQELQRNVISSSSFKLFLELEPQVRDIIFKFYESKYASCLKMLDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHKMAAAF 373          
BLAST of FC931200 vs. ExPASy Swiss-Prot
Match: CSN1_MOUSE (COP9 signalosome complex subunit 1 OS=Mus musculus GN=Gps1 PE=1 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.366e-64
Identity = 130/249 (52.21%), Postives = 169/249 (67.87%), Query Frame = 1
Query:    1 ENELNAYRTNLIKESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEP---------VTIAKLRCAAGLAHLEARKYKLAARKFLEVGPDLGNSYNEVIAAQDVATYGGLCALASFDRAELKSKVIDNVNFRNFLELVPEVRELINDFYSSRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNIALIQYTHPFVSVDLHMMXNAF 720
            + +L  Y+ N IKESIR G++D GD Y   G L +A K Y R RDYCT++KH+I+MC++ I VS+ +  ++HV SYVSKAE TPE  E            + KL+CAAGLA L ARKYK AA+ FL    D  + + E+++  +VA YGGLCALA+FDR EL+  VI + +F+ FLEL P+VR++I  FY S+YASCL  L  +K NLLLD++L  HV TLY QIRN ALIQY  P+VS D+H M  AF
Sbjct:  126 DTDLKNYKGNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTSAKHVINMCLNVIKVSVYLQNWSHVLSYVSKAESTPEIAEQRGERDSQTQAILTKLKCAAGLAELAARKYKQAAKCFLLASFDHCD-FPELLSPSNVAVYGGLCALATFDRQELQRNVISSSSFKLFLELEPQVRDIIFKFYESKYASCLKMLDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHKMAAAF 373          
BLAST of FC931200 vs. ExPASy Swiss-Prot
Match: CSN1_XENLA (COP9 signalosome complex subunit 1 OS=Xenopus laevis GN=csn1 PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 5.272e-64
Identity = 129/249 (51.81%), Postives = 169/249 (67.87%), Query Frame = 1
Query:    1 ENELNAYRTNLIKESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEP---------VTIAKLRCAAGLAHLEARKYKLAARKFLEVGPDLGNSYNEVIAAQDVATYGGLCALASFDRAELKSKVIDNVNFRNFLELVPEVRELINDFYSSRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNIALIQYTHPFVSVDLHMMXNAF 720
            + +L  Y+ N IKESIR G++D GD Y   G L +A K Y R RDYCT++KH+I+MC++ I VS+ +  ++HV SYVSKAE TPE  E            + KL+CAAGLA L ARKYK AA+ FL    D  + + E+++  +VA YGGLCALA+FDR EL+  VI + +F+ FLEL P+VR++I  FY S+YASCL  L  +K NLLLD++L  HV TLY QIRN ALIQY  P+VS D++ M  AF
Sbjct:  142 DTDLKNYKGNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTSAKHVINMCLNVIKVSVYLQNWSHVLSYVSKAESTPEIAEQRGERDSQTQAVLTKLKCAAGLAELAARKYKQAAKCFLLASFDHCD-FPELLSPSNVAVYGGLCALATFDRQELQRNVISSSSFKLFLELEPQVRDIIFKFYESKYASCLKMLDEIKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMYKMATAF 389          
BLAST of FC931200 vs. ExPASy Swiss-Prot
Match: CSN1_HUMAN (COP9 signalosome complex subunit 1 OS=Homo sapiens GN=GPS1 PE=1 SV=4)

HSP 1 Score: 242.662 bits (618), Expect = 1.534e-63
Identity = 129/249 (51.81%), Postives = 168/249 (67.47%), Query Frame = 1
Query:    1 ENELNAYRTNLIKESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEP---------VTIAKLRCAAGLAHLEARKYKLAARKFLEVGPDLGNSYNEVIAAQDVATYGGLCALASFDRAELKSKVIDNVNFRNFLELVPEVRELINDFYSSRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNIALIQYTHPFVSVDLHMMXNAF 720
            + +L  Y+ N IKESIR G++D GD Y   G L +A K Y R RDYCT++KH+I+MC++ I VS+ +  ++HV SYVSKAE TPE  E            + KL+CAAGLA L ARKYK AA+  L    D  + + E+++  +VA YGGLCALA+FDR EL+  VI + +F+ FLEL P+VR++I  FY S+YASCL  L  +K NLLLD++L  HV TLY QIRN ALIQY  P+VS D+H M  AF
Sbjct:  146 DTDLKNYKGNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTSAKHVINMCLNVIKVSVYLQNWSHVLSYVSKAESTPEIAEQRGERDSQTQAILTKLKCAAGLAELAARKYKQAAKCLLLASFDHCD-FPELLSPSNVAIYGGLCALATFDRQELQRNVISSSSFKLFLELEPQVRDIIFKFYESKYASCLKMLDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHRMAAAF 393          
BLAST of FC931200 vs. ExPASy Swiss-Prot
Match: CSN1_DROME (COP9 signalosome complex subunit 1b OS=Drosophila melanogaster GN=CSN1b PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.875e-61
Identity = 121/246 (49.19%), Postives = 169/246 (68.70%), Query Frame = 1
Query:    1 ENELNAYRTNLIKESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIA------KLRCAAGLAHLEARKYKLAARKFLEVGPDLGNSYNEVIAAQDVATYGGLCALASFDRAELKSKVIDNVNFRNFLELVPEVRELINDFYSSRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNIALIQYTHPFVSVDLHMMXNAF 720
            +++L  Y++N IKESIR G++D  D Y + G L +A K Y R RDYCT+ KH+++MC++ I VSI +  + HV SY+SKAE TP+  E    A      +L CAAGLA L+ +KYK+AA+ FL    D  + + E+I+  +VA YGGLCALA+FDR ELK  VI + +F+ FLEL P++R++I  FY S+YASCL  L  ++ NLL+D+++  HV TLY +IRN ALIQY  P++S D+H M  AF
Sbjct:  178 DSDLKNYKSNSIKESIRRGHDDLADHYLSCGDLTNALKCYSRARDYCTSGKHVVNMCLNVIKVSIYLQNWAHVMSYISKAESTPDFAEGSKEANAQVHTRLECAAGLAELQQKKYKVAAKHFLNANFDHCD-FPEMISTSNVAVYGGLCALATFDRQELKRLVIASTSFKLFLELEPQLRDIIFKFYESKYASCLTLLDEIRDNLLVDMYIAPHVTTLYTKIRNRALIQYFSPYMSADMHKMAMAF 422          
BLAST of FC931200 vs. ExPASy Swiss-Prot
Match: CSN1_EMENI (COP9 signalosome complex subunit 1 OS=Emericella nidulans GN=csnA PE=1 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 6.046e-52
Identity = 111/243 (45.68%), Postives = 148/243 (60.91%), Query Frame = 1
Query:    1 ENELNAYRTNLIKESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQT---PEALEPVTIAKLRCAAGLAHLEARKYKLAARKFLEVGPDLGNSYNEVIAAQDVATYGGLCALASFDRAELKSKVIDNVNFRNFLELVPEVRELINDFYSSRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNIALIQYTHPFVSVDLHMMXNAF 720
            E+EL  Y+ NLIKESIRMG  + G  Y+  G L  AFK+Y R RD+CTT  HI  M    I V+IE G + +V S V +       PE  +     K+  A GL+ L +  Y  AA  F+   P LG+++NEV+ + DVA YGGLCALAS DR EL+ +V+DN +FRNFLEL P +R  I+ F +S++  CL+ L   +A+ LLDIHL  HV+ LY++IR  ++ QY  PF  V L  M   F
Sbjct:  140 EHELRGYKNNLIKESIRMGNEELGQHYHRIGDLTSAFKAYSRMRDFCTTPSHIASMLFKIINVAIERGDWLNVQSNVHRLRSQGGKPEE-QAKHQPKISAAMGLSQLHSGSYLEAANSFIATDPSLGDTFNEVLTSNDVAVYGGLCALASMDRNELQRRVLDNSSFRNFLELEPHIRRAISFFCNSKFRPCLEILEAYRADYLLDIHLQRHVQVLYNRIRTKSIQQYLIPFNRVSLESMAKIF 381          
BLAST of FC931200 vs. ExPASy Swiss-Prot
Match: CSN1_NEUCR (COP9 signalosome complex subunit 1 OS=Neurospora crassa GN=csn-1 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.650e-36
Identity = 91/246 (36.99%), Postives = 141/246 (57.32%), Query Frame = 1
Query:    7 ELNAYRTNLIKESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYV----SKAEQTPEALEPVTIAKLRCAAGLAHLEARKYKLAARKFLE----VGPDLGNSYNEVIAAQDVATYGGLCALASFDRAELKSKVIDNVNFRNFLELVPEVRELINDFYSSRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNIALIQYTHPFVSVDLHMMXNAF 720
            EL  Y+ NLIKESIRMG  D G  + A G +  A  S+ + R   ++++ ++ +    + V+IE   +  + +++    S  +  P+A    T +K+  A G+A L   +YK AA  F+E    V P++   YN++ +  DVA YGGL ALA+ DR EL++ ++DN +FR FL+  P +R  I  F + RYA+C++ L + + + LLDI+L  HV  LY  IR  +++QY  PF  V L  M  AF
Sbjct:  101 ELQGYKNNLIKESIRMGNEDLGKHFEAIGDVEAAMDSFWKMRTEVSSTEQLVDLGKLLVRVAIERRDWKSIGNHLKPLNSVNDSDPKAKALKTYSKI--ANGIAALGQERYKEAAFCFVEASSGVPPEI---YNQIASPNDVAIYGGLLALATMDRHELQANLLDNDSFREFLQREPHIRRAITQFVNGRYAACIEILESYRPDYLLDIYLQKHVPKLYADIRTKSIVQYLKPFSCVRLDTMQKAF 341          
BLAST of FC931200 vs. ExPASy Swiss-Prot
Match: CSN1_SCHPO (COP9 signalosome complex subunit 1 OS=Schizosaccharomyces pombe GN=csn1 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.499e-26
Identity = 74/243 (30.45%), Postives = 122/243 (50.21%), Query Frame = 1
Query:    7 ELNAYRTNLIKESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRCAAGLAHLEARKYKLAARKFLEVGPDLGNSYNEVIAAQDVATYGGLCALASFDRAELKSKVIDNVNFRNFLELVPEVRELINDFYSSRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNIALIQYTHPF-------VSVDLHMMXN 714
            EL AY+ NLI+ESIR    D   F+   G    A +SY + R+YCT +  I H+ +  + +SI +G ++HV ++ S+A+ T  A   +T + +    GLA+     Y+ A   FL+V  D  +    +I   D++ Y  LCALA +D   L  ++  N  F    +L P +R  +    + +Y+  LD L     +  LD++L   +  L+  IR  +L+ Y  P+       ++VD H+  N
Sbjct:   98 ELKAYKNNLIRESIRAAQLDLASFFADVGQFDSALRSYAKVREYCTNAGQIAHLSLELMRISIWIGNYSHVLAFGSRAKSTVSAAMELT-SPIYAYCGLANFCLGDYEEALAHFLKVETDTSDG---IITKTDISVYISLCALACWDHKRLIQELERNEEFNALSDLDPSLRRCLQAKCNRKYSLLLDTLQQNAQDYSLDMYLAPQLTNLFSLIRERSLLDYLIPYSALPFSKIAVDFHIDEN 336          
The following BLAST results are available for this feature:
BLAST of FC931200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
CSN1_ARATH2.664e-11684.17COP9 signalosome complex subunit 1 OS=Arabidopsis ... [more]
CSN1_DICDI3.083e-7253.75COP9 signalosome complex subunit 1 OS=Dictyosteliu... [more]
CSN1_RAT2.366e-6452.21COP9 signalosome complex subunit 1 OS=Rattus norve... [more]
CSN1_MOUSE2.366e-6452.21COP9 signalosome complex subunit 1 OS=Mus musculus... [more]
CSN1_XENLA5.272e-6451.81COP9 signalosome complex subunit 1 OS=Xenopus laev... [more]
CSN1_HUMAN1.534e-6351.81COP9 signalosome complex subunit 1 OS=Homo sapiens... [more]
CSN1_DROME1.875e-6149.19COP9 signalosome complex subunit 1b OS=Drosophila ... [more]
CSN1_EMENI6.046e-5245.68COP9 signalosome complex subunit 1 OS=Emericella n... [more]
CSN1_NEUCR4.650e-3636.99COP9 signalosome complex subunit 1 OS=Neurospora c... [more]
CSN1_SCHPO1.499e-2630.45COP9 signalosome complex subunit 1 OS=Schizosaccha... [more]

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Properties
Property NameValue
Genbank descriptionC34102E11EF PostHarvP1 Citrus clementina cDNA clone C34102E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931200 ID=FC931200; Name=FC931200; organism=Citrus clementina; type=EST; length=721bp
GAGAACGAACTCAATGCTTATAGGACAAATTTGATCAAAGAAAGTATAAG
AATGGGATATAATGATTTTGGAGACTTTTACTATGCTCATGGTGCACTTG
GGGATGCTTTTAAAAGTTATGTTCGCACTCGTGATTATTGCACTACATCA
AAGCATATTATTCATATGTGTATGAGTGCAATTCTGGTCAGCATTGAGAT
GGGTCAATTTACTCATGTGACAAGCTATGTCAGCAAAGCAGAACAAACAC
CTGAGGCTCTTGAACCTGTTACGATTGCAAAACTACGTTGTGCTGCAGGA
TTGGCTCATTTGGAGGCTAGAAAGTACAAGCTTGCTGCTCGTAAGTTCTT
GGAAGTGGGTCCTGATCTGGGAAATTCCTATAATGAGGTGATTGCTGCTC
AAGATGTTGCAACATACGGGGGACTTTGTGCACTTGCAAGTTTTGATCGG
GCTGAGCTTAAGAGCAAAGTTATAGATAATGTCAACTTCCGAAATTTCTT
AGAGCTGGTTCCTGAAGTTAGGGAGCTTATTAACGATTTCTACTCCAGCC
GTTATGCATCATGTCTGGATTACCTTGGAAATCTTAAGGCAAACCTGTTG
CTTGATATCCATTTGCACGACCATGTTGAGACGTTGTATGATCAAATACG
TAACATAGCCCTCATCCAGTATACACACCCATTTGTGTCTGTTGATTTGC
ACATGATGGNCAATGCTTTCA
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