FC931204

Overview
NameFC931204
Unique NameFC931204
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length772
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931204 vs. ExPASy Swiss-Prot
Match: FNTA_PEA (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Pisum sativum GN=FTA PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 3.038e-60
Identity = 108/165 (65.45%), Postives = 132/165 (80.00%), Query Frame = 1
Query:    1 GWEDELDYCQILLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRISSVCLKVLSTKSNYVFALSTLLDLICHGFRPSEEFREAINALNTPDSGPLDSDLGRAICRVLECVDPLRCNYWLWRKSKLP 495
            GWEDEL YC  LL EDIFNNSAWNQRYFV+TRSP+LGGL AMR+SEV FT+EAI+  PENES WRYLRGL+KD++  ++ND ++SS+CLK+L TKSNY+FALSTLLDL     +P+E+FR+AI AL        DSD+   IC +LE VDP+R NYW+WRKS+LP
Sbjct:  166 GWEDELSYCSELLAEDIFNNSAWNQRYFVITRSPVLGGLKAMRESEVLFTVEAIISYPENESSWRYLRGLFKDESTLYVNDAQVSSLCLKILKTKSNYLFALSTLLDLSASVIQPNEDFRDAIEALRLQILIKQDSDIAITICSILEQVDPIRVNYWVWRKSRLP 330          
BLAST of FC931204 vs. ExPASy Swiss-Prot
Match: FNTA_ARATH (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Arabidopsis thaliana GN=FTA PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.725e-55
Identity = 102/165 (61.82%), Postives = 128/165 (77.58%), Query Frame = 1
Query:    1 GWEDELDYCQILLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRISSVCLKVLS-TKSNYVFALSTLLDLICHGFRPSEEFREAINALNTPDSGPLDSDLGRAICRVLECVDPLRCNYWLWRKSKL 492
            GWEDELDYC  LL  D+FNNSAWNQRY+V+T+SPLLGGL AMR+SEV++TI+AIL NP NES WRYL+ LYKDD ESWI+DP +SSVCL VLS T   + FALSTLLDL+C G RP+ E ++++ AL   +    +++L   +C +L  VDP+R NYW WRKSK+
Sbjct:  174 GWEDELDYCHELLEADVFNNSAWNQRYYVITQSPLLGGLEAMRESEVSYTIKAILTNPANESSWRYLKALYKDDKESWISDPSVSSVCLNVLSRTDCFHGFALSTLLDLLCDGLRPTNEHKDSVRALANEEP---ETNLANLVCTILGRVDPVRANYWAWRKSKI 335          
BLAST of FC931204 vs. ExPASy Swiss-Prot
Match: FNTA_SOLLC (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Solanum lycopersicum GN=FTA PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.236e-53
Identity = 98/162 (60.49%), Postives = 126/162 (77.78%), Query Frame = 1
Query:    1 GWEDELDYCQILLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRISSVCLKVLSTKSNYVFALSTLLDLICHGFRPSEEFREAINALNTPDSGPLDSDLGRAICRVLECVDPLRCNYWLWRKS 486
            GWEDEL YCQ LL +DI+NNSAWNQRYFVVTRSPLLGGL+AMR+ EVN+T++AI  +PENESPWRYLRGLYK+DT+S + D +++SV   VL++++++V AL  LLDL+CH   PS+E + A++ L TP S   D  L + IC +LE  DP+R  YW WRKS
Sbjct:  164 GWEDELAYCQQLLEDDIYNNSAWNQRYFVVTRSPLLGGLVAMRELEVNYTVQAIRASPENESPWRYLRGLYKNDTQSLVQDSQVASVLWDVLTSQNSHVHALRFLLDLLCHDLEPSQELKSAVDVL-TPQSCSPDLALTKKICSILEHADPMRVKYWNWRKS 324          
BLAST of FC931204 vs. ExPASy Swiss-Prot
Match: FNTA_DICDI (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Dictyostelium discoideum GN=fntA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.171e-11
Identity = 53/171 (30.99%), Postives = 81/171 (47.37%), Query Frame = 1
Query:    4 WEDELDYCQILLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRISSVCLKVLSTKSNYVFALSTLLDLICHGFRPSEEFREAINALNTPDSGPLDSDLGRAICRVL-ECVDPLRCNYWLWRKSKLPLTVSSQ 513
            W  EL     LL  D  NNS WN R+FV++        +++ + EV F    I  +P NESPW YL+GL+K    S I  P +  + L++   KS Y+   S +  +I   ++         N+LN              IC++L E +DP+  NYW ++ +    T+S Q
Sbjct:  170 WNGELAMVDKLLSLDHRNNSVWNHRFFVISNLNPSPFPLSLIEREVEFAFNHIRHSPNNESPWSYLKGLFKGQKISTIY-PSLLDILLEM---KSKYI-GCSHVNSIILDIYQEQNTKISLENSLN--------------ICKLLSETIDPIHKNYWNFKYN----TISDQ 317          
BLAST of FC931204 vs. ExPASy Swiss-Prot
Match: FNTA_HUMAN (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Homo sapiens GN=FNTA PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.608e-11
Identity = 33/72 (45.83%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    4 WEDELDYCQILLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 219
            W++EL Y   LL ED+ NNS WNQRYFV++ +       A+ + EV +T+E I   P NES W YL+G+ +D
Sbjct:  216 WDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR-AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD 286          
BLAST of FC931204 vs. ExPASy Swiss-Prot
Match: FNTA_BOVIN (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Bos taurus GN=FNTA PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.608e-11
Identity = 33/72 (45.83%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    4 WEDELDYCQILLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 219
            W++EL Y   LL ED+ NNS WNQRYFV++ +       A+ + EV +T+E I   P NES W YL+G+ +D
Sbjct:  212 WDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR-AILEREVQYTLEMIKLVPHNESAWNYLKGILQD 282          
BLAST of FC931204 vs. ExPASy Swiss-Prot
Match: FNTA_RAT (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Rattus norvegicus GN=Fnta PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.911e-11
Identity = 32/72 (44.44%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    4 WEDELDYCQILLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 219
            W++EL Y   LL ED+ NNS WNQR+FV++ +       A+ + EV +T+E I   P NES W YL+G+ +D
Sbjct:  216 WDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDR-AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD 286          
BLAST of FC931204 vs. ExPASy Swiss-Prot
Match: FNTA_MOUSE (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Mus musculus GN=Fnta PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.911e-11
Identity = 32/72 (44.44%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    4 WEDELDYCQILLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 219
            W++EL Y   LL ED+ NNS WNQR+FV++ +       A+ + EV +T+E I   P NES W YL+G+ +D
Sbjct:  216 WDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDR-AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD 286          
The following BLAST results are available for this feature:
BLAST of FC931204 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
FNTA_PEA3.038e-6065.45Protein farnesyltransferase/geranylgeranyltransfer... [more]
FNTA_ARATH1.725e-5561.82Protein farnesyltransferase/geranylgeranyltransfer... [more]
FNTA_SOLLC1.236e-5360.49Protein farnesyltransferase/geranylgeranyltransfer... [more]
FNTA_DICDI1.171e-1130.99Protein farnesyltransferase/geranylgeranyltransfer... [more]
FNTA_HUMAN2.608e-1145.83Protein farnesyltransferase/geranylgeranyltransfer... [more]
FNTA_BOVIN2.608e-1145.83Protein farnesyltransferase/geranylgeranyltransfer... [more]
FNTA_RAT9.911e-1144.44Protein farnesyltransferase/geranylgeranyltransfer... [more]
FNTA_MOUSE9.911e-1144.44Protein farnesyltransferase/geranylgeranyltransfer... [more]
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Properties
Property NameValue
Genbank descriptionC34102F03EF PostHarvP1 Citrus clementina cDNA clone C34102F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931204 ID=FC931204; Name=FC931204; organism=Citrus clementina; type=EST; length=772bp
GGGTGGGAAGATGAGCTTGACTATTGTCAGATACTCCTTGGAGAAGATAT
ATTTAATAATTCTGCATGGAATCAGAGATACTTTGTAGTAACCAGATCTC
CCTTACTTGGAGGCCTAATAGCAATGAGAGATTCTGAAGTTAATTTTACC
ATTGAAGCAATTTTGGGTAACCCTGAGAATGAGAGTCCTTGGAGATACCT
TCGAGGCCTTTACAAGGATGACACCGAGTCTTGGATTAATGATCCTAGGA
TCTCCTCAGTGTGTTTGAAAGTTTTGAGTACCAAAAGCAACTATGTTTTT
GCTCTGAGCACACTTTTAGATCTTATTTGCCATGGTTTTCGGCCAAGTGA
AGAGTTCAGAGAAGCAATAAATGCTTTGAATACTCCAGACTCAGGACCAC
TGGATTCTGACTTGGGGAGGGCTATTTGTCGAGTTTTAGAGTGTGTTGAT
CCACTAAGATGTAACTATTGGTTGTGGCGCAAGAGCAAGCTTCCTCTGAC
TGTCTCGAGTCAATAAGAGATAGGATGTTGTCCAGTTTAGGTCATGCTGA
TGGATGCATGGTCAAACCTACATCCTTTTCACATGCAGAAGACTGTTTGT
TCGATCTTGACTAATTTATTTTAATCAAAGGGAGCAACCAATAGCTAGTT
GAGTGATTTCTTTGAGTGAGCAGCGCCATTTGTCGTAGAGCTCCAGATGT
TGTGCCAAATACATGTTCCCCTCAGCTGTATCATAGAGTGGAATCTACTG
GGAGAATTGATGGATCCCATGA
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