FC931207

Overview
NameFC931207
Unique NameFC931207
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11767 contig Ccv1_Contig11767:1123..1826. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931207 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 3.866e-88
Identity = 147/235 (62.55%), Postives = 193/235 (82.13%), Query Frame = 1
Query:    1 EGVNLPPPKQEGFWNTLLPRLVKAIEDT-GDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIY 702
            +GV LP  ++ GF ++++PRL++ + D+ GD ILLF+TP  + +DKF W RDEEF+R+TLAG+NPY+I L+ E+PLKS LDP +YGP ESAIT +L+E+++  +++VEEAI QK+LF+LD+HDLFLPYV K+R LK TT+YGSRTIFFLT  GTLR +AIELTRP    +PQW+QVF PS  +T+ WLW++AKAHV AHDAG+H+L++HWLRTHC  EPY+IA NRQLS MHPIY
Sbjct:  390 DGVELPGVEKLGFLHSIVPRLLELLRDSPGDKILLFDTPANVQKDKFAWLRDEEFARETLAGINPYAIELVREFPLKSKLDPAVYGPAESAITADLLEEQMRRVMTVEEAISQKRLFMLDFHDLFLPYVHKIRSLKHTTMYGSRTIFFLTDDGTLRLLAIELTRPASPSQPQWRQVFTPSTDTTKSWLWRMAKAHVRAHDAGHHELITHWLRTHCAVEPYIIAANRQLSEMHPIY 624          
BLAST of FC931207 vs. ExPASy Swiss-Prot
Match: LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 3.866e-88
Identity = 148/234 (63.25%), Postives = 184/234 (78.63%), Query Frame = 1
Query:    1 EGVNLPPPKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIY 702
            EG+ LP  K  G    LLPR++KA+ +  D+IL F+ P  ++RD+F W RD+EF+RQTLAGLNPYSI+L+ EWPL S LDP +YG P S IT E++E+E+ G ++V+EA+K K+LF+LDYHDL LPYV KVR+L +TTLY SRT+FFL+   TLRP+AIELT PP   KPQWKQVF P + +T CWLW LAK H ++HDAGYHQL+SHWLRTH CTEPY+IA NRQLS MHPIY
Sbjct:  350 EGIQLP--KDAGLL-PLLPRIIKALGEAQDDILQFDAPVLINRDRFSWLRDDEFARQTLAGLNPYSIQLVEEWPLISKLDPAVYGDPTSLITWEIVEREVKGNMTVDEALKNKRLFVLDYHDLLLPYVNKVRELNNTTLYASRTLFFLSDDSTLRPVAIELTCPPNINKPQWKQVFTPGYDATSCWLWNLAKTHAISHDAGYHQLISHWLRTHACTEPYIIAANRQLSAMHPIY 580          
BLAST of FC931207 vs. ExPASy Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 4.725e-86
Identity = 143/220 (65.00%), Postives = 180/220 (81.82%), Query Frame = 1
Query:   43 NTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIY 702
            N ++PR+V+ IEDT +++L FE PE ++RD+F WFRDEEF+RQTLAGLNP  IR +TE+P+ S LDP +YGP ESA++ E++EK + G ++VEEA+++K+LF+LDYHD+FLPYV +VR+L  TTLYGSRT+FFL+  GTL P+AIELTRP    KPQWK+ F     +TE WLWKLAKAHVL HD GYHQLVSHWLRTH C EPY+IATNRQLS MHP+Y
Sbjct:  363 NDVIPRVVQMIEDTTEHVLRFEVPEMLERDRFSWFRDEEFARQTLAGLNPICIRRLTEFPIVSKLDPAVYGPAESALSKEILEKMMNGRMTVEEAMEKKRLFLLDYHDVFLPYVHRVRELPDTTLYGSRTVFFLSDEGTLMPLAIELTRPQSPTKPQWKRAFTHGSDATESWLWKLAKAHVLTHDTGYHQLVSHWLRTHACVEPYIIATNRQLSRMHPVY 582          
BLAST of FC931207 vs. ExPASy Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2)

HSP 1 Score: 311.227 bits (796), Expect = 3.386e-84
Identity = 142/235 (60.43%), Postives = 186/235 (79.15%), Query Frame = 1
Query:    1 EGVNLPPPKQEGFWNTLLPRLVKAIEDT-GDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIY 702
            +GV LP   +  F  +++PRL++ + DT  + IL FETP  + +DKF W RDEEF+R+TLAG+NPY+I L+ E+PLKS LDP +YGP ESAIT +L+E+++  +++VEEAI QK+LF+LD+HDLFLPYV K+R L  TT+YGSRT+FFLT  GTL+ +AIELTRP    +PQW+QVF PS  +T  WLW++AKAHV AHDAG+H+L++HWLRTHC  EPY+IA NRQLS MHPIY
Sbjct:  373 DGVELPGVDKLNFLESVVPRLLEHLRDTPAEKILRFETPANIQKDKFAWLRDEEFARETLAGINPYAIELVREFPLKSKLDPAVYGPAESAITADLLEEQMRRVMTVEEAISQKRLFMLDFHDLFLPYVHKIRSLDHTTMYGSRTVFFLTDDGTLQLLAIELTRPASPSQPQWRQVFTPSTDATMSWLWRMAKAHVRAHDAGHHELITHWLRTHCAVEPYIIAANRQLSEMHPIY 607          
BLAST of FC931207 vs. ExPASy Swiss-Prot
Match: LOX21_HORVU (Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1)

HSP 1 Score: 295.434 bits (755), Expect = 1.923e-79
Identity = 137/205 (66.83%), Postives = 164/205 (80.00%), Query Frame = 1
Query:   94 ILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHS--TECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIY 702
            +  FETPE  DRDKF WFRDEEF+RQT+AG+NP SI+L+TE+P+KS LD   YGP +S IT E++E++I  +++ +EA++ KKLF+LDYHDL LPYV KVR+L  TTLYGSR +FFLT  GTLRPIAIELTRP    KPQW+QVF P      T  WLW+LAKAH+LAHDAG HQLVSHWLRTH CTEPY+IA NRQLS MHP+Y
Sbjct:  409 VFKFETPEIHDRDKFAWFRDEEFARQTIAGMNPMSIQLVTEFPIKSNLDEATYGPADSLITKEVVEEQIRRVMTADEAVQNKKLFMLDYHDLLLPYVHKVRKLDGTTLYGSRALFFLTADGTLRPIAIELTRPKSKKKPQWRQVFTPGCDGSVTGSWLWQLAKAHILAHDAGVHQLVSHWLRTHACTEPYIIAANRQLSQMHPVY 613          
BLAST of FC931207 vs. ExPASy Swiss-Prot
Match: LOX22_HORVU (Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare GN=LOX2.2 PE=1 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 3.753e-75
Identity = 136/207 (65.70%), Postives = 158/207 (76.33%), Query Frame = 1
Query:   94 ILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLP----SWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIY 702
            +  FETPE  D DK  WFRDEEF+RQTLAG+NP SI+L+TE P+ S LD   YGP +S IT ELIEK+I  +++ EEA+ QKKLF+LDYHDL LPYV +VR+L + T+YGSRT+FFL   GTLRPIAIELTRP    K QW++VF P    S   T  W W+LAK HVL+HD GYHQLVSHWLRTHCC EPYVIA NRQLS MHPIY
Sbjct:  408 VFKFETPEIHDMDKLAWFRDEEFARQTLAGMNPLSIQLVTELPIVSKLDELKYGPADSLITKELIEKQINRIMTAEEAVAQKKLFMLDYHDLLLPYVHRVRKLDNKTMYGSRTLFFLADDGTLRPIAIELTRPKSPHKQQWRKVFTPGSGYSGSVTGSWEWQLAKIHVLSHDTGYHQLVSHWLRTHCCVEPYVIAANRQLSQMHPIY 614          
BLAST of FC931207 vs. ExPASy Swiss-Prot
Match: LOX5_ORYSJ (Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2)

HSP 1 Score: 242.662 bits (618), Expect = 1.479e-63
Identity = 111/214 (51.87%), Postives = 158/214 (73.83%), Query Frame = 1
Query:   64 VKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPM-NGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIY 702
            V+ I++  + +L ++TP+ + +DKF W RD+EF+RQ LAG+NP +I  +  +P  S LDP +YGPPESAIT E I   + GM SV+EA++  +L++LDYHD+FLP+++++        YG+R +FFLT AGTL+PIAIEL  PPM +G  + K+VF P   +T  WLW+LAKAHV ++DAG HQL++HWLRTH C EP++IA +RQ+S MHPI+
Sbjct:  373 VRKIQENSEGLLRYDTPDIIKKDKFAWLRDDEFARQALAGINPVNIERLQAFPPVSKLDPAVYGPPESAITEEHIIGHLDGM-SVQEAVEGSRLYMLDYHDIFLPFLDRINAQDGRKAYGTRAVFFLTAAGTLKPIAIELCLPPMTDGCKRAKRVFTPPADATSNWLWQLAKAHVCSNDAGVHQLINHWLRTHACMEPFIIAAHRQMSAMHPIF 585          
BLAST of FC931207 vs. ExPASy Swiss-Prot
Match: LOX6_ORYSJ (Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2)

HSP 1 Score: 231.876 bits (590), Expect = 2.611e-60
Identity = 110/235 (46.81%), Postives = 163/235 (69.36%), Query Frame = 1
Query:    1 EGVNLPPPKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMN-GKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIY 702
            EG+ L    QE  +  +   LV+ I+++ + +L ++TP  + +DKF W RD+EF+RQ +AG+NP +I  +  +P  S LDP IYGPPES+IT   I   + G+ +V++A+ + KLFI+DYHD +LP+++++  +     Y +RTIFFLT AGTL+PIAIEL+ PP   G+P+  +V  P + +T  WLW LAKAHV ++DAG HQLV+HWLRTH   EP+++A +R +S MHPI+
Sbjct:  368 EGLRLKLGLQEHLFQKI--PLVQKIQESSEGMLRYDTPSILSKDKFAWLRDDEFARQAVAGINPVNIERLQVFPPVSKLDPAIYGPPESSITETHIAGHLNGL-TVQQAMDEAKLFIVDYHDAYLPFLDRINAIDGRKAYATRTIFFLTEAGTLKPIAIELSLPPAKPGEPRPSKVLTPPYDATSNWLWMLAKAHVSSNDAGVHQLVNHWLRTHATMEPFILAAHRHMSAMHPIF 599          
BLAST of FC931207 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.770e-59
Identity = 103/218 (47.25%), Postives = 157/218 (72.02%), Query Frame = 1
Query:   52 LPRLV-KAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIY 702
            LP++V   ++++   +L ++TP+ + +DK  W RD+EF+RQ +AG+NP +I  +  +P  S LDP+IYGP  SA+T + I   + G  SV++A+++ +L++LDYHD+FLP+++++  L     Y +RTIFFLT  GTL+P+AIEL+ PP   K + K+V  P   +T  W+W+LAKAHV ++DAG HQLV+HWLRTH C EP+++A +RQLS MHPI+
Sbjct:  388 LPKVVVDTLQESTKGLLKYDTPKILSKDKNAWLRDDEFARQAIAGINPVNIERVKTFPPVSNLDPKIYGPQHSALTDDHIIGHLDGF-SVQQALEENRLYMLDYHDIFLPFLDRINALDGRKAYATRTIFFLTRLGTLKPVAIELSLPPHGPKHRSKRVLTPPVDATSNWMWQLAKAHVSSNDAGVHQLVNHWLRTHACLEPFILAAHRQLSAMHPIF 604          
BLAST of FC931207 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 6.431e-59
Identity = 110/230 (47.83%), Postives = 155/230 (67.39%), Query Frame = 1
Query:   22 PKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGM-ISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTT--LYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIY 702
            PK  G     +   +  I +  + +L ++TP  +  D+F W RD EF RQ LAG+NP +I L+ E P++S LDP +YGP ES +T E+I +E+     ++E+A+++K+LF++DYHD+ LP+VEK+  +K      Y SRTIFF +  G LRP+AIEL+ PP   + + K V+     +T  W+WKLAKAHV ++DAG HQLV+HWLRTH   EPY+IATNRQLS MHP+Y
Sbjct:  374 PKDTGLGG-FIGGFMNGILNVTETLLKYDTPAVIKWDRFAWLRDNEFGRQALAGVNPVNIELLKELPIRSNLDPALYGPQESVLTEEIIAREVEHYGTTIEKALEEKRLFLVDYHDILLPFVEKINSIKEDPRKTYASRTIFFYSKNGALRPLAIELSLPP-TAESENKFVYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLRTHASMEPYIIATNRQLSTMHPVY 601          
The following BLAST results are available for this feature:
BLAST of FC931207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
LOXC2_ORYSJ3.866e-8862.55Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
LOX2_ARATH3.866e-8863.25Lipoxygenase 2, chloroplastic OS=Arabidopsis thali... [more]
LOX23_HORVU4.725e-8665.00Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare... [more]
LOXC1_ORYSJ3.386e-8460.43Lipoxygenase 7, chloroplastic OS=Oryza sativa subs... [more]
LOX21_HORVU1.923e-7966.83Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare... [more]
LOX22_HORVU3.753e-7565.70Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare... [more]
LOX5_ORYSJ1.479e-6351.87Putative lipoxygenase 5 OS=Oryza sativa subsp. jap... [more]
LOX6_ORYSJ2.611e-6046.81Probable lipoxygenase 6 OS=Oryza sativa subsp. jap... [more]
LOX3_ARATH3.770e-5947.25Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOX6_ARATH6.431e-5947.83Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionC34102F06EF PostHarvP1 Citrus clementina cDNA clone C34102F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931207 ID=FC931207; Name=FC931207; organism=Citrus clementina; type=EST; length=704bp
GAAGGAGTCAACTTGCCTCCACCCAAACAGGAAGGTTTTTGGAACACACT
GCTTCCCAGATTGGTTAAGGCAATTGAGGATACAGGAGATAATATTTTGC
TGTTTGAGACGCCAGAAACAATGGACAGAGACAAATTCTTTTGGTTTAGG
GATGAGGAATTTTCTAGGCAAACTCTCGCTGGTCTCAACCCGTATAGCAT
AAGGTTGATCACGGAATGGCCGTTGAAAAGCACACTCGATCCTGAAATTT
ACGGACCACCAGAATCAGCAATTACCACAGAATTGATTGAAAAAGAAATT
GGAGGAATGATTTCTGTTGAAGAGGCTATAAAACAAAAGAAGTTGTTCAT
CTTAGATTACCATGACCTATTTTTACCATATGTGGAAAAAGTGAGACAAC
TCAAAAGCACAACGTTGTATGGATCTCGCACAATTTTCTTCCTAACACCA
GCCGGCACATTGAGACCAATAGCTATTGAGCTCACTCGGCCTCCAATGAA
TGGCAAGCCACAATGGAAACAAGTGTTTTTACCTTCTTGGCACTCTACTG
AGTGCTGGCTTTGGAAGCTAGCCAAAGCTCATGTCCTTGCTCATGATGCT
GGCTATCACCAGCTTGTCAGCCATTGGTTAAGAACTCATTGTTGCACAGA
ACCTTACGTAATAGCAACCAATCGGCAACTCAGCGTGATGCATCCAATCT
ATAG
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