FC931215

Overview
NameFC931215
Unique NameFC931215
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12735 contig Ccv1_Contig12735:24..687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931215 vs. ExPASy Swiss-Prot
Match: KTI12_DANRE (Protein KTI12 homolog OS=Danio rerio GN=kti12 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.250e-21
Identity = 55/138 (39.86%), Postives = 81/138 (58.70%), Query Frame = 3
Query:  252 MALVVICGQPSSGKSLAATCXXXXXXXXXXXXTVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDL 665
            M L+++CG P SGK+  A               V I+ +    +D+N  YA    EKNLRG LR+EV+R V+KD+I+I+DSLN IKGYRYEL+CL +     +C++Y     D   +WNK+R  + ++ Y  +I + L
Sbjct:    1 MPLILMCGYPCSGKTRRAQ-ELRDYFTQNTGRKVHIVGDEDQGIDKNSVYADSQKEKNLRGALRAEVERKVNKDDIVILDSLNYIKGYRYELFCLIKHTQTPHCLVYSLTSADLSSEWNKDR--EADSQYTQEILDAL 135          
BLAST of FC931215 vs. ExPASy Swiss-Prot
Match: KTI12_XENLA (Protein KTI12 homolog OS=Xenopus laevis GN=kti12 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.528e-19
Identity = 53/138 (38.41%), Postives = 81/138 (58.70%), Query Frame = 3
Query:  252 MALVVICGQPSSGKSLAATCXXXXXXXXXXXXTVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDL 665
            M L+++CG P SGKS  +               V II +    +DRN  YA    EK+LRG LR+ V+R ++K++++I+DSLN IKGYRYEL+CL +     +C+++C    +    WN+ R +K E  Y+ +IF+ L
Sbjct:    1 MPLILLCGFPCSGKS--SRSQELQEHLEQSGRKVHIIGDHVLGVDRNAVYADSREEKDLRGSLRAAVERKLNKEDVVILDSLNYIKGYRYELFCLIKHVQTPHCLIHCITSPEVSSTWNQHR-DKNE-QYNQEIFDSL 134          
BLAST of FC931215 vs. ExPASy Swiss-Prot
Match: KTI12_MOUSE (Protein KTI12 homolog OS=Mus musculus GN=Kti12 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.601e-16
Identity = 47/109 (43.12%), Postives = 66/109 (60.55%), Query Frame = 3
Query:  252 MALVVICGQPSSGKSLAATCXXXXXXXXXXXXTVRIIDEASFHLDRNQS-YASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYC 575
            M LVV+CG PSSGKS                  V ++D+AS    ++ + Y     EK LR  LR+ V+R +S+ +++I+DS+N IKG+RYEL+CLARAA    C+LYC
Sbjct:    1 MPLVVVCGLPSSGKSQRTE--ELRRALASEGRAVYVVDDASVLGAQDPTVYGDSAGEKALRAALRAAVERRLSRQDVVILDSVNYIKGFRYELYCLARAARTPLCLLYC 107          
BLAST of FC931215 vs. ExPASy Swiss-Prot
Match: KTI12_HUMAN (Protein KTI12 homolog OS=Homo sapiens GN=KTI12 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.025e-15
Identity = 47/109 (43.12%), Postives = 64/109 (58.72%), Query Frame = 3
Query:  252 MALVVICGQPSSGKSLAATCXXXXXXXXXXXXTVRIIDEAS-FHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYC 575
            M LVV CG P SGKS  A               V ++D+A+    +    Y     EK LRG LR+ V+R +S+ +++I+DSLN IKG+RYEL+CLARAA    C++YC
Sbjct:    1 MPLVVFCGLPYSGKSRRAE--ELRVALAAEGRAVYVVDDAAVLGAEDPAVYGDSAREKALRGALRASVERRLSRHDVVILDSLNYIKGFRYELYCLARAARTPLCLVYC 107          
BLAST of FC931215 vs. ExPASy Swiss-Prot
Match: KTI12_RAT (Protein KTI12 homolog OS=Rattus norvegicus GN=Kti12 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.339e-15
Identity = 45/109 (41.28%), Postives = 66/109 (60.55%), Query Frame = 3
Query:  252 MALVVICGQPSSGKSLAATCXXXXXXXXXXXXTVRIIDEASFHLDRNQS-YASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYC 575
            M LVV+CG PSSGKS                 +V ++D+AS    ++ + Y     EK LR  LR+ V+R +S+ +++I+DS+N IKG+RYEL+CLARA     C++YC
Sbjct:    1 MPLVVVCGLPSSGKSRRTE--ELRRALTGEGRSVYVVDDASVLGAQDSTVYGDSAGEKALRAALRAAVERRLSRQDVVILDSMNYIKGFRYELYCLARAVRTPLCLVYC 107          
BLAST of FC931215 vs. ExPASy Swiss-Prot
Match: KTI12_BOVIN (Protein KTI12 homolog OS=Bos taurus GN=KTI12 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.748e-15
Identity = 46/109 (42.20%), Postives = 64/109 (58.72%), Query Frame = 3
Query:  252 MALVVICGQPSSGKSLAATCXXXXXXXXXXXXTVRIIDEAS-FHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYC 575
            M LVV CG P SGKS                  V+++D+A+    +    Y     EK LRG LR+ V+R +S+ +++I+DSLN IKG+RYEL+CLARAA    C++YC
Sbjct:    1 MPLVVFCGLPYSGKSRRVE--ELRAALEAEGRAVQVVDDAAVLGAEDATVYGDSAREKALRGALRAAVERLLSRQDVVILDSLNYIKGFRYELYCLARAARTPICLVYC 107          
BLAST of FC931215 vs. ExPASy Swiss-Prot
Match: KTI12_SCHPO (Protein kti12 OS=Schizosaccharomyces pombe GN=kti12 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.133e-14
Identity = 47/145 (32.41%), Postives = 77/145 (53.10%), Query Frame = 3
Query:  252 MALVVICGQPSSGKSL-------AATCXXXXXXXXXXXXTVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDL 665
            M L+++ G PSSGK+        A                V II++ S ++++ ++Y     EK  RG+L S V R +SK   +I D+LN IKG+RY+L+C +++    +CV++  + +D CRK+N  +    E  Y D + E L
Sbjct:    1 MPLIIVSGYPSSGKTTRSNELKKALEDRIHQNIDNTKDYRVIIINDESLNIEK-ETYRESKNEKAARGLLYSAVQRELSKSTFVICDALNYIKGFRYQLYCESKSMYTTHCVIHVAVPQDLCRKFNSNK----EQPYPDDVLEQL 140          
The following BLAST results are available for this feature:
BLAST of FC931215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
KTI12_DANRE1.250e-2139.86Protein KTI12 homolog OS=Danio rerio GN=kti12 PE=2... [more]
KTI12_XENLA1.528e-1938.41Protein KTI12 homolog OS=Xenopus laevis GN=kti12 P... [more]
KTI12_MOUSE4.601e-1643.12Protein KTI12 homolog OS=Mus musculus GN=Kti12 PE=... [more]
KTI12_HUMAN1.025e-1543.12Protein KTI12 homolog OS=Homo sapiens GN=KTI12 PE=... [more]
KTI12_RAT1.339e-1541.28Protein KTI12 homolog OS=Rattus norvegicus GN=Kti1... [more]
KTI12_BOVIN1.748e-1542.20Protein KTI12 homolog OS=Bos taurus GN=KTI12 PE=2 ... [more]
KTI12_SCHPO1.133e-1432.41Protein kti12 OS=Schizosaccharomyces pombe GN=kti1... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34102G03EF PostHarvP1 Citrus clementina cDNA clone C34102G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931215 ID=FC931215; Name=FC931215; organism=Citrus clementina; type=EST; length=665bp
ATCCCTAATTCCCTAATTCCCTTCTCTCTTTCTTTACTTCTTTGTATTGT
GAAAGAGAGAGAACGACAAATTCACTCGCACACACCCACGCCCACGCTGC
CGCCGCTGTCACTTTCGTTCAAGTGTGCCAGCGCTGCAGCTTCTAGCCGT
TCTCGATTTGCTTCCTCGTTCCAGTTGCTGCCGCCTCTGCGGTCGCTGCC
TCCGGCTTCGTTCGCTGCCGTCAGCGCCATAAGGGCCAACTGTTTTGACT
GATGGCATTGGTTGTAATCTGTGGGCAACCGAGCAGTGGAAAGTCACTGG
CAGCAACATGTCTAGCTGAAGCTCTAAAAGAATCAGAGGCAAAAGAGACT
GTCAGGATTATTGATGAAGCTTCTTTTCATCTTGATCGCAATCAGAGCTA
TGCCAGTATGCCTGCAGAGAAGAATTTGCGTGGAGTTCTCAGGTCTGAAG
TTGATAGATCTGTGTCCAAAGATAATATTATAATAGTAGATTCTTTGAAC
AGTATCAAGGGCTACAGATATGAGTTATGGTGCTTGGCTCGTGCTGCAGG
GATTAGATACTGTGTTCTGTATTGCGACTTGGAAGAAGATCATTGTAGAA
AATGGAATAAAGAGCGCCATGAGAAAGGAGAAGCCGCTTATGATGATAAG
ATATTTGAAGATTTG
back to top