FC931218

Overview
NameFC931218
Unique NameFC931218
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931218 vs. ExPASy Swiss-Prot
Match: RL141_ARATH (60S ribosomal protein L14-1 OS=Arabidopsis thaliana GN=RPL14A PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.397e-36
Identity = 47/54 (87.04%), Postives = 48/54 (88.89%), Query Frame = 3
Query:    3 DQNRALVDAPDMVRGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWE 164
            DQNRALVDAPDM R QMN KRLSLTDI IDI RVPKKK LI+AMEKADVKNKWE
Sbjct:   32 DQNRALVDAPDMERIQMNLKRLSLTDIVIDINRVPKKKVLIEAMEKADVKNKWE 85          

HSP 2 Score: 78.1814 bits (191), Expect = 3.397e-36
Identity = 38/48 (79.17%), Postives = 43/48 (89.58%), Query Frame = 2
Query:  167 SSWGRKLIVQKKTASLNDFDRFKLMLAKIKKGGLVRQELAKLMNENAA 310
            SSWGRKLIVQK+ A+LNDFDRFK+MLAKIK+ G+VRQELAKL  E AA
Sbjct:   87 SSWGRKLIVQKRRAALNDFDRFKIMLAKIKRAGIVRQELAKLKREIAA 134          
BLAST of FC931218 vs. ExPASy Swiss-Prot
Match: RL14_PEA (Probable 60S ribosomal protein L14 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 6.469e-31
Identity = 42/53 (79.25%), Postives = 45/53 (84.91%), Query Frame = 3
Query:    3 DQNRALVDAPDMVRGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKW 161
            DQ RALVDAPDM R  +NFKRLSLTD+KIDI RVPKKK LI A+E ADVKNKW
Sbjct:   32 DQTRALVDAPDMERSPINFKRLSLTDLKIDIKRVPKKKDLIKALEAADVKNKW 84          

HSP 2 Score: 67.3958 bits (163), Expect = 6.469e-31
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = 2
Query:  167 SSWGRKLIVQKKTASLNDFDRFKLMLAKIKKGGLVRQELAKL 292
            SSWGRKLIV+K  A+LNDFDRFK+MLAKIK+   VRQELAKL
Sbjct:   87 SSWGRKLIVKKTRAALNDFDRFKIMLAKIKRAAGVRQELAKL 128          
BLAST of FC931218 vs. ExPASy Swiss-Prot
Match: RL142_ARATH (60S ribosomal protein L14-2 OS=Arabidopsis thaliana GN=RPL14B PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.298e-19
Identity = 50/71 (70.42%), Postives = 57/71 (80.28%), Query Frame = 3
Query:    3 DQNRALVDAPDMVRGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWEVALGEES*LFRRRQHHL 215
            DQNRALVDAPDM R QMNFKRLSLTDI IDI RVPKKK LI+AMEKADVKNKWE +      + ++R+ +L
Sbjct:   32 DQNRALVDAPDMERIQMNFKRLSLTDIVIDINRVPKKKALIEAMEKADVKNKWEKSSWGRKLIVQKRRANL 102          

HSP 2 Score: 77.411 bits (189), Expect = 6.241e-14
Identity = 38/48 (79.17%), Postives = 42/48 (87.50%), Query Frame = 2
Query:  167 SSWGRKLIVQKKTASLNDFDRFKLMLAKIKKGGLVRQELAKLMNENAA 310
            SSWGRKLIVQK+ A+LNDFDRFK+MLAKIKK G+VRQELAKL  E  A
Sbjct:   87 SSWGRKLIVQKRRANLNDFDRFKIMLAKIKKAGVVRQELAKLKKEITA 134          
BLAST of FC931218 vs. ExPASy Swiss-Prot
Match: RL14_LUMRU (60S ribosomal protein L14 OS=Lumbricus rubellus GN=RPL14 PE=3 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 8.032e-11
Identity = 26/56 (46.43%), Postives = 32/56 (57.14%), Query Frame = 3
Query:    3 DQNRALVDAP--DMVRGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWE 164
            DQNRALVD P   + R  MNFK L LT++K   P   K   +  A EK ++  KWE
Sbjct:   32 DQNRALVDGPCTHVARKSMNFKELELTNLKAKFPHSAKTGVVKKAWEKDEISKKWE 87          

HSP 2 Score: 35.8094 bits (81), Expect = 8.032e-11
Identity = 17/42 (40.48%), Postives = 26/42 (61.90%), Query Frame = 2
Query:  167 SSWGRKLIVQKKTASLNDFDRFKLMLAKIKKGGLVRQELAKL 292
            S   +K+  ++K  +L DF+RFKLM AK  +  L++ E  KL
Sbjct:   89 SHLAKKIAAKEKRKTLTDFERFKLMKAKQARNRLIKIEFGKL 130          
The following BLAST results are available for this feature:
BLAST of FC931218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RL141_ARATH3.397e-3687.0460S ribosomal protein L14-1 OS=Arabidopsis thalian... [more]
RL14_PEA6.469e-3179.25Probable 60S ribosomal protein L14 OS=Pisum sativu... [more]
RL142_ARATH1.298e-1970.4260S ribosomal protein L14-2 OS=Arabidopsis thalian... [more]
RL14_LUMRU8.032e-1146.4360S ribosomal protein L14 OS=Lumbricus rubellus GN... [more]
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Properties
Property NameValue
Genbank descriptionC34102G07EF PostHarvP1 Citrus clementina cDNA clone C34102G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931218 ID=FC931218; Name=FC931218; organism=Citrus clementina; type=EST; length=609bp
TAGATCAGAACAGAGCTCTAGTTGATGCCCCTGATATGGTGAGAGGCCAA
ATGAACTTCAAGAGGCTTTCACTGACTGATATCAAAATTGACATTCCCCG
TGTACCGAAGAAGAAGACATTGATTGATGCTATGGAGAAGGCTGATGTTA
AGAACAAGTGGGAAGTAGCTCTTGGGGAAGAAAGCTGATTGTTCAGAAGA
AGACAGCATCACTTAATGACTTTGACAGGTTCAAGCTTATGTTGGCCAAG
ATCAAGAAGGGAGGTTTGGTCAGGCAGGAGCTTGCTAAGCTGATGAACGA
GAATGCAGCCTAATGTTATCCGATGTGTAGCTTCCAATTTTGTTGTGATG
ATGGCTAAATTTTCTTCAAGAACGTTTTACATTTATTTTTGTGTCAATTC
TGAGATTAAGACCAATTTCAGGAGATGCTTTTTATATTATGATACTGTAG
TCAGTGTTACCTGCAAATCCTTCTTGTCTGCAGGCTTGTTTTACTTTTTA
AGAATTTTTACATGGATGGATTATCATCTTGTGTTTCATTTGCTACTAAT
TTGAAAATTAGGAATGGTGGGGCCCATGAAATCTCGAAAGTTCCCGACTT
CTATCCTTG
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