FC931219

Overview
NameFC931219
Unique NameFC931219
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13042 contig Ccv1_Contig13042:3..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931219 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 387.497 bits (994), Expect = 3.687e-107
Identity = 175/205 (85.37%), Postives = 192/205 (93.66%), Query Frame = 1
Query:   88 ILFLVCLMW-VADARLPGDYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNW 699
            ILF   +++ +ADAR+PG YSGG WQ+AHATFYGGSDASGTMGGACGYGNLYSQGYG NTAALSTALFNNG+SCGACFE+KCAN+P WCHSGSPSIL+TATNFCPPN A PSDNGGWCNPPR HFDLAMP+FLKIA+YRAGIVPVSYRRVPCRK+GGIRFTING RYFNLVL+TNVAGAGDI+R +VKGSRTGWMS+SRNWGQNW
Sbjct:    7 ILFTTFVLFSLADARIPGIYSGGAWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGMSCGACFELKCANDPQWCHSGSPSILITATNFCPPNLAQPSDNGGWCNPPREHFDLAMPVFLKIAQYRAGIVPVSYRRVPCRKRGGIRFTINGHRYFNLVLITNVAGAGDIVRASVKGSRTGWMSLSRNWGQNW 211          
BLAST of FC931219 vs. ExPASy Swiss-Prot
Match: EXPA6_ARATH (Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 382.489 bits (981), Expect = 1.186e-105
Identity = 169/205 (82.44%), Postives = 191/205 (93.17%), Query Frame = 1
Query:   85 VILFLVCLMWVADARLPGDYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNW 699
            V+  L  ++ +++AR+PG Y+GG W++AHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNG SCGACFE+KCA++P WCHSGSPSI +TATNFCPPN+A PSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVS+RRVPCRK+GGIRFTINGFRYFNLVLVTNVAGAG+I+R+ VKG+ T WM+MSRNWGQNW
Sbjct:    7 VLSVLTTILALSEARIPGVYNGGGWETAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFELKCASDPKWCHSGSPSIFITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGNIVRLGVKGTHTSWMTMSRNWGQNW 211          
BLAST of FC931219 vs. ExPASy Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 378.252 bits (970), Expect = 2.237e-104
Identity = 171/196 (87.24%), Postives = 180/196 (91.84%), Query Frame = 1
Query:  118 ADARLPGDYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAW--CHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNW 699
            A  R+PG Y GG WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVN AALSTALFN+G SCGACFEIKC N+P W  CH GSPSIL+TATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFL IAEYRAGIVPVSYRRVPCRKKGG+RFTINGFRYFNLVL+TNVAGAGDI+R +VKG+ TGWM MSRNWGQNW
Sbjct:   23 AAGRIPGAYGGGEWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNNAALSTALFNSGQSCGACFEIKCVNQPGWEWCHPGSPSILITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRKKGGVRFTINGFRYFNLVLITNVAGAGDIVRASVKGTSTGWMPMSRNWGQNW 218          
BLAST of FC931219 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 366.696 bits (940), Expect = 6.736e-101
Identity = 166/198 (83.84%), Postives = 180/198 (90.91%), Query Frame = 1
Query:  106 LMWVADARLPGDYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNW 699
            L+   +A++PG YSGGPWQ+AHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNG SCGACFEIKC ++P WC  G+PSILVTATNFCPPN+A PSD+GGWCNPPR HFDLAMPMFLKI  YRAGIVPVSYRRVPCRK GGIRFT+NGFRYFNLVLVTNVAGAGDI  V+VKGS+T W+ MSRNWGQNW
Sbjct:   19 LLTATNAKIPGVYSGGPWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFEIKCTDDPRWCVPGNPSILVTATNFCPPNFAQPSDDGGWCNPPREHFDLAMPMFLKIGLYRAGIVPVSYRRVPCRKIGGIRFTVNGFRYFNLVLVTNVAGAGDINGVSVKGSKTDWVRMSRNWGQNW 216          
BLAST of FC931219 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 361.688 bits (927), Expect = 2.167e-99
Identity = 161/210 (76.67%), Postives = 187/210 (89.05%), Query Frame = 1
Query:   79 AGVILFLVCLM---WVADARLPGDYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNW 699
            A VI F+  ++   + A+A++PG Y+GGPW +AHATFYG +DASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCG+CFE+KC N+P WC  G+PSIL+TATNFCPPN+   SDNGGWCNPPR HFDLAMPMFL IA+Y+AGIVPVSYRR+PCRKKGGIRFTINGF+YFNLVLVTNVAGAGD+++V+VKGS T W+ +SRNWGQNW
Sbjct:    3 AKVITFMAVMVVTAFTANAKIPGVYTGGPWINAHATFYGEADASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGSCFELKCINDPGWCLPGNPSILITATNFCPPNFNQASDNGGWCNPPREHFDLAMPMFLSIAKYKAGIVPVSYRRIPCRKKGGIRFTINGFKYFNLVLVTNVAGAGDVIKVSVKGSNTQWLDLSRNWGQNW 212          
BLAST of FC931219 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 361.303 bits (926), Expect = 2.830e-99
Identity = 161/201 (80.10%), Postives = 178/201 (88.56%), Query Frame = 1
Query:   97 LVCLMWVADARLPGDYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNW 699
            L  L+   DA +P  +SGG WQ+AHATFYGG+DASGTMGGACGYGNLYSQGYG NTAALST+LFN+G SCGACFEIKC N+P WCH G+PS+ VTATNFCPPN A PSDNGGWCNPPR HFDLAMP+FLKIAEYRAGIVP+SYRRV CRK GGIRFTING RYFNLVL+TNVAGAGDI R +VKGS+TGWMS++RNWGQNW
Sbjct:   14 LFLLLSFTDAGIPRVFSGGSWQTAHATFYGGNDASGTMGGACGYGNLYSQGYGTNTAALSTSLFNSGQSCGACFEIKCVNDPKWCHPGNPSVFVTATNFCPPNLAQPSDNGGWCNPPRSHFDLAMPVFLKIAEYRAGIVPISYRRVACRKSGGIRFTINGHRYFNLVLITNVAGAGDIARTSVKGSKTGWMSLTRNWGQNW 214          
BLAST of FC931219 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 2.104e-86
Identity = 150/204 (73.53%), Postives = 168/204 (82.35%), Query Frame = 1
Query:   88 ILFLVCLMWVADARLPGDYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNW 699
            +LFL+ L   A A     Y G  WQSAHATFYGG DASGTMGGACGYGNLYSQGYG NTAALSTALFN+G +CG+C+E++C N  + C  GS  I VTATNFCPPNY LPSD+GGWCNPPRPHFD+A P FL IA+YRAGIVPVS+RRVPC KKGG+RFT+NG  YFNLVLVTNVAGAGD+  V++KGSRTGW  MSRNWGQNW
Sbjct:    6 VLFLLFLARQASA---AGYGG--WQSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPGS--ITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNW 202          
BLAST of FC931219 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 2.104e-86
Identity = 150/204 (73.53%), Postives = 168/204 (82.35%), Query Frame = 1
Query:   88 ILFLVCLMWVADARLPGDYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNW 699
            +LFL+ L   A A     Y G  WQSAHATFYGG DASGTMGGACGYGNLYSQGYG NTAALSTALFN+G +CG+C+E++C N  + C  GS  I VTATNFCPPNY LPSD+GGWCNPPRPHFD+A P FL IA+YRAGIVPVS+RRVPC KKGG+RFT+NG  YFNLVLVTNVAGAGD+  V++KGSRTGW  MSRNWGQNW
Sbjct:    6 VLFLLFLARQASA---AGYGG--WQSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPGS--ITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNW 202          
BLAST of FC931219 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 2.747e-86
Identity = 143/186 (76.88%), Postives = 161/186 (86.56%), Query Frame = 1
Query:  142 YSGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNW 699
            Y+GG W +AHATFYGG DASGTMGGACGYGNLYSQGYG NTAALSTALFNNGLSCGACFEI+C N+  WC  GS  I+VTATNFCPPN ALP++ GGWCNPP+ HFDL+ P+F +IA+YRAGIVPV+YRRVPC ++GGIRFTING  YFNLVL+TNV GAGD+    VKGSRTGW +MSRNWGQNW
Sbjct:   22 YAGGGWVNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIRCQNDGKWCLPGS--IVVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFQRIAQYRAGIVPVAYRRVPCVRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAMVKGSRTGWQAMSRNWGQNW 205          
BLAST of FC931219 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 314.694 bits (805), Expect = 3.038e-85
Identity = 145/207 (70.05%), Postives = 162/207 (78.26%), Query Frame = 1
Query:   79 AGVILFLVCLMWVADARLPGDYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNW 699
            +  +L L         R   DY  G WQSAHATFYGG DASGTMGGACGYGNLYS GYG NTAALST LFN+G +CG+C+E++C N+  WC  GS  + VTATN CPPNYALP+D+GGWCNPPRPHFD+A P FL+I  YRAGIVPVSYRRVPC KKGGIRFTING  YFNLVLVTNVAG GD+  V++KGS TGW  MSRNWGQNW
Sbjct:    5 SSALLLLFSAFCFLARRAAADY--GSWQSAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTVLFNDGAACGSCYELRCDNDGQWCLPGS--VTVTATNLCPPNYALPNDDGGWCNPPRPHFDMAEPAFLQIGVYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGPGDVQSVSIKGSSTGWQPMSRNWGQNW 207          
The following BLAST results are available for this feature:
BLAST of FC931219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
EXPA4_ARATH3.687e-10785.37Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 ... [more]
EXPA6_ARATH1.186e-10582.44Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 ... [more]
EXPA7_ORYSJ2.237e-10487.24Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA3_ARATH6.736e-10183.84Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 ... [more]
EXPA9_ARATH2.167e-9976.67Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 ... [more]
EXP16_ARATH2.830e-9980.10Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=... [more]
EXPA4_ORYSJ2.104e-8673.53Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSI2.104e-8673.53Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4... [more]
EXPA1_ARATH2.747e-8676.88Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 ... [more]
EXPA2_ORYSJ3.038e-8570.05Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionC34102G08EF PostHarvP1 Citrus clementina cDNA clone C34102G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931219 ID=FC931219; Name=FC931219; organism=Citrus clementina; type=EST; length=699bp
GAACCAAAACTAACTACACGGAGCTGTGTCTTCTTTGTGAGTGAAGAGAA
TAAAGAAACGATGGCGGTGGTGAATTGGGCTGGCGTTATCCTCTTTTTAG
TATGCTTAATGTGGGTGGCTGATGCAAGACTCCCTGGCGATTACTCCGGT
GGCCCATGGCAAAGCGCCCATGCCACCTTTTACGGCGGCTCTGACGCCTC
CGGTACCATGGGAGGAGCGTGCGGTTACGGTAACTTGTACAGCCAGGGCT
ACGGCGTGAACACAGCGGCGCTGAGCACGGCGCTGTTCAACAATGGCTTG
AGCTGCGGTGCTTGCTTTGAGATCAAGTGTGCAAACGAACCCGCGTGGTG
TCACTCCGGGAGCCCTTCCATTTTGGTTACCGCTACAAACTTTTGCCCGC
CCAATTACGCACTCCCAAGTGACAATGGCGGCTGGTGTAACCCTCCTCGC
CCTCATTTTGACCTCGCCATGCCCATGTTCCTCAAGATTGCTGAGTACCG
CGCCGGCATCGTCCCCGTCTCCTACCGCCGGGTACCATGCCGCAAGAAGG
GAGGAATCAGGTTCACAATAAACGGGTTCCGCTACTTCAACTTGGTTCTG
GTCACCAACGTGGCGGGTGCAGGGGATATCCTGAGGGTGAACGTGAAAGG
GTCAAGAACTGGCTGGATGAGCATGAGCCGTAACTGGGGCCAAAACTGG
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