FC931220

Overview
NameFC931220
Unique NameFC931220
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931220 vs. ExPASy Swiss-Prot
Match: VDAC2_SOLTU (Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 317.005 bits (811), Expect = 6.552e-86
Identity = 161/223 (72.20%), Postives = 181/223 (81.17%), Query Frame = 1
Query:   61 MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVRG*LSPCSS*CPLTFCFEVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTXYAVGAELTH 729
            MVKGPGLYS+IGKKARDLLY+DY SDHKFTVTTY++ GVAIT+SG+KKGELFLADVSTQLKNKNITTDVKVDTNSN++TTITVDEPAPGLK+IFSF+VPDQ+SGK                   VELQY HEYAGI+T IG TA+P+            ALGTDLSFDTATGNFTKCNAGLS++ +DLIASL LNDKGDT++ASYYH V P+T  AVGAELTH
Sbjct:    1 MVKGPGLYSDIGKKARDLLYRDYVSDHKFTVTTYSTTGVAITASGLKKGELFLADVSTQLKNKNITTDVKVDTNSNVYTTITVDEPAPGLKTIFSFVVPDQKSGK-------------------VELQYLHEYAGINTSIGLTASPLVNFSGVAGNNTVALGTDLSFDTATGNFTKCNAGLSFSSSDLIASLALNDKGDTVSASYYHTVKPVTNTAVGAELTH 204          
BLAST of FC931220 vs. ExPASy Swiss-Prot
Match: VDAC1_SOLTU (Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 297.745 bits (761), Expect = 4.113e-80
Identity = 151/223 (67.71%), Postives = 171/223 (76.68%), Query Frame = 1
Query:   61 MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVRG*LSPCSS*CPLTFCFEVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTXYAVGAELTH 729
            M KGPGLY+EIGKKARDLLYKDYQSDHKF++TTY+  GV ITSSG KKG+LFLADV+TQLKNKN+TTD+KVDTNSNLFTTITVDE APGLK+I SF VPDQRSGK                   +E+QY H+YAGI T +G TANPI            ALGTD+SFDT TG+FTKCNAGLS+T+ DL+ASL LN+KGD L ASYYH VSPLT  AVGAE+ H
Sbjct:    1 MGKGPGLYTEIGKKARDLLYKDYQSDHKFSITTYSPTGVVITSSGSKKGDLFLADVNTQLKNKNVTTDIKVDTNSNLFTTITVDEAAPGLKTILSFRVPDQRSGK-------------------LEVQYLHDYAGICTSVGLTANPIVNFSGVVGTNIIALGTDVSFDTKTGDFTKCNAGLSFTNADLVASLNLNNKGDNLTASYYHTVSPLTSTAVGAEVNH 204          
BLAST of FC931220 vs. ExPASy Swiss-Prot
Match: VDAC_PEA (Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1 PE=1 SV=2)

HSP 1 Score: 270.396 bits (690), Expect = 7.033e-72
Identity = 137/223 (61.43%), Postives = 162/223 (72.65%), Query Frame = 1
Query:   61 MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVRG*LSPCSS*CPLTFCFEVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTXYAVGAELTH 729
            MVKGPGLY++IGKKARDLLYKDY SD KFT++TY+  GVAITSSG KKGELFL DV+TQLKNKNITTD+KVDTNSNLFTTITV+EPAPG+K+I SF VP+Q SGK                   VELQY HEYAGIS+ +G  ANPI            A G D+SFDT  G  TK NA +++   DLI SLTLN+KGD L+ASYYH ++PL+  AVG +++H
Sbjct:    1 MVKGPGLYTDIGKKARDLLYKDYHSDKKFTISTYSPTGVAITSSGTKKGELFLGDVNTQLKNKNITTDIKVDTNSNLFTTITVNEPAPGVKAILSFKVPEQTSGK-------------------VELQYLHEYAGISSSVGLKANPIVNFSSVIGTNALAFGADISFDTKLGELTKSNAAVNFVKDDLIGSLTLNEKGDLLSASYYHAINPLSNTAVGVDISH 204          
BLAST of FC931220 vs. ExPASy Swiss-Prot
Match: VDAC1_ARATH (Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=At3g01280 PE=1 SV=3)

HSP 1 Score: 265.003 bits (676), Expect = 2.955e-70
Identity = 139/223 (62.33%), Postives = 161/223 (72.20%), Query Frame = 1
Query:   61 MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVRG*LSPCSS*CPLTFCFEVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTXYAVGAELTH 729
            MVKGPGLY+EIGKKARDLLYKD+ SD KF++TT++ AGVAITS+G KKG+L L DV+ Q + KNITTD+KV T+S    T TVDE APGL+SIFSF VPDQ SGK                   VELQY HEYAGIST +G T NP             A+GTD+SFDT +GNFTK NAGLS+T  DLIASLT+NDKGD LNASYYHIV+PL   AVGAE++H
Sbjct:    1 MVKGPGLYTEIGKKARDLLYKDHNSDQKFSITTFSPAGVAITSTGTKKGDLLLGDVAFQSRRKNITTDLKVCTDSTFLITATVDEAAPGLRSIFSFKVPDQNSGK-------------------VELQYLHEYAGISTSMGLTQNPTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKINAGLSFTKEDLIASLTVNDKGDLLNASYYHIVNPLFNTAVGAEVSH 204          
BLAST of FC931220 vs. ExPASy Swiss-Prot
Match: VDAC1_ORYSJ (Mitochondrial outer membrane protein porin OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3)

HSP 1 Score: 250.366 bits (638), Expect = 7.531e-66
Identity = 129/220 (58.64%), Postives = 157/220 (71.36%), Query Frame = 1
Query:   70 GPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVRG*LSPCSS*CPLTFCFEVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTXYAVGAELTH 729
            GPGLY EIGKKARDLLY+DYQ+DHKFT+TTYTS GVAIT++  KK +L   ++ +Q+KNKNIT DVK +++SN+ TT+TVDE  PGLKSI SF VPDQRSGK                    ELQY H+YAG+S  IG TA+P+            A+G D+S DTATGN TK NAGLS+++ DLIASL LN+KGD+L ASYYHIV+  +  AVGAELTH
Sbjct:    3 GPGLYPEIGKKARDLLYRDYQTDHKFTLTTYTSNGVAITATSTKKADLIFGEIQSQIKNKNITVDVKANSDSNVVTTVTVDELTPGLKSILSFAVPDQRSGK-------------------FELQYSHDYAGVSASIGLTASPVVNLSSVFGTKALAVGADVSLDTATGNLTKYNAGLSFSNDDLIASLNLNNKGDSLTASYYHIVNH-SATAVGAELTH 202          
BLAST of FC931220 vs. ExPASy Swiss-Prot
Match: VDAC2_ARATH (Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana GN=HSR2 PE=1 SV=3)

HSP 1 Score: 244.202 bits (622), Expect = 5.397e-64
Identity = 127/223 (56.95%), Postives = 154/223 (69.06%), Query Frame = 1
Query:   61 MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVRG*LSPCSS*CPLTFCFEVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTXYAVGAELTH 729
            MVKGPGLY+EIGKKARDLLY+DYQ D KF+VTTY+S GVAIT++G  KG LFL DV+TQ+KN N T DVKV T+S+L TT+T DEPAPGLK I    +PD +SGK                    E+QY H+YAGIST +GFTA PI            +LGTD++++T +GNF   NAG ++T  DL ASL LNDKG+ LNASYY IVSP T   VGAE++H
Sbjct:    1 MVKGPGLYTEIGKKARDLLYRDYQGDQKFSVTTYSSTGVAITTTGTNKGSLFLGDVATQVKNNNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLPDHKSGK-------------------AEVQYFHDYAGISTSVGFTATPIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDLTASLILNDKGEKLNASYYQIVSPST--VVGAEISH 202          
BLAST of FC931220 vs. ExPASy Swiss-Prot
Match: VDAC1_WHEAT (Mitochondrial outer membrane porin OS=Triticum aestivum GN=VDAC1 PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.598e-62
Identity = 126/221 (57.01%), Postives = 154/221 (69.68%), Query Frame = 1
Query:   70 GPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDE-PAPGLKSIFSFIVPDQRSGKVRG*LSPCSS*CPLTFCFEVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTXYAVGAELTH 729
            GPGLYS IGKKA+DLLY+DYQ+DHKFT+TTYT+ G AIT++  KK +L + ++ +Q+KNKNIT DVK ++ SN+ TTIT D+  APGLK+I SF VPDQ+SGK                   VELQY H+YAGI+  IG TANP+            A+G D+S DTAT NF K NA LSYT+ DLIASL LN+KGD+L ASYYHIV   +  AVGAELTH
Sbjct:    3 GPGLYSGIGKKAKDLLYRDYQTDHKFTLTTYTANGPAITATSTKKADLTVGEIQSQIKNKNITVDVKANSASNVITTITADDLAAPGLKTILSFAVPDQKSGK-------------------VELQYLHDYAGINASIGLTANPVVNLSGAFGTSALAVGADVSLDTATKNFAKYNAALSYTNQDLIASLNLNNKGDSLTASYYHIVEK-SGTAVGAELTH 203          
BLAST of FC931220 vs. ExPASy Swiss-Prot
Match: VDAC_MAIZE (Outer plastidial membrane protein porin OS=Zea mays GN=POR1 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.613e-54
Identity = 113/224 (50.45%), Postives = 144/224 (64.29%), Query Frame = 1
Query:   61 MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDE-PAPGLKSIFSFIVPDQRSGKVRG*LSPCSS*CPLTFCFEVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTXYAVGAELTH 729
            MV   GLY++IGKK RDLLYKDY +  KF +TT +  GVAIT++G +K E    ++ TQ+KNK +T DVK ++ S+L TTITVDE   PGLKSI + +VPDQRSGK+                   E QY HEYAG++  +G  +NP+            ++G D+SFDTAT +FTK NA LS T  DLIASL LN+ GDTL ASYYH+V   +  AVGAEL+H
Sbjct:    1 MVVAVGLYTDIGKKTRDLLYKDYNTHQKFCLTTSSPNGVAITAAGTRKNESIFGELHTQIKNKKLTVDVKANSESDLLTTITVDEFGTPGLKSIINLVVPDQRSGKL-------------------EFQYLHEYAGVNASVGLNSNPMVNLSGAFGSKALSVGVDVSFDTATSDFTKYNAALSLTSPDLIASLHLNNHGDTLVASYYHLVKNHSGTAVGAELSH 205          
The following BLAST results are available for this feature:
BLAST of FC931220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
VDAC2_SOLTU6.552e-8672.20Mitochondrial outer membrane protein porin of 36 k... [more]
VDAC1_SOLTU4.113e-8067.71Mitochondrial outer membrane protein porin of 34 k... [more]
VDAC_PEA7.033e-7261.43Outer plastidial membrane protein porin OS=Pisum s... [more]
VDAC1_ARATH2.955e-7062.33Mitochondrial outer membrane protein porin 1 OS=Ar... [more]
VDAC1_ORYSJ7.531e-6658.64Mitochondrial outer membrane protein porin OS=Oryz... [more]
VDAC2_ARATH5.397e-6456.95Mitochondrial outer membrane protein porin 2 OS=Ar... [more]
VDAC1_WHEAT6.598e-6257.01Mitochondrial outer membrane porin OS=Triticum aes... [more]
VDAC_MAIZE6.613e-5450.45Outer plastidial membrane protein porin OS=Zea may... [more]
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Properties
Property NameValue
Genbank descriptionC34102G10EF PostHarvP1 Citrus clementina cDNA clone C34102G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931220 ID=FC931220; Name=FC931220; organism=Citrus clementina; type=EST; length=729bp
CAGCTGAAATATCAAAACTGATATTTCTCAGCGTTTCCTTTCCATTTTCT
CTGGAGAATCATGGTGAAAGGCCCCGGGCTCTACTCTGAAATCGGCAAGA
AAGCCCGAGATCTTCTCTACAAGGACTACCAGAGCGACCACAAGTTCACT
GTCACTACTTACACGTCAGCTGGAGTCGCGATAACTTCGAGTGGTGTTAA
GAAAGGTGAGCTTTTTTTGGCTGATGTCAGCACTCAGTTGAAGAACAAGA
ACATCACTACTGATGTTAAAGTTGATACTAACTCTAATCTTTTTACAACC
ATCACTGTCGATGAGCCTGCTCCTGGACTCAAGTCAATCTTTAGCTTTAT
CGTTCCTGATCAGAGATCTGGCAAGGTAAGAGGCTAATTAAGTCCATGTT
CCTCCTGATGTCCTTTGACATTCTGTTTTGAGGTGGAACTCCAATATCAG
CATGAATATGCTGGAATAAGCACTGGCATTGGATTCACTGCAAATCCCAT
TGTTAACTTTTCTGGTGTGGTTGGAAACAATTCTGTTGCTCTTGGGACTG
ATCTCTCATTTGATACTGCCACTGGCAACTTCACCAAGTGCAATGCGGGG
CTGAGCTATACACATACTGACCTCATTGCTTCCCTGACATTGAATGACAA
AGGCGACACCCTTAATGCTTCCTACTACCACATTGTAAGCCCACTGACCN
AATACGCTGTTGGGGCGGAGCTGACCCAT
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