FC931223

Overview
NameFC931223
Unique NameFC931223
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931223_ssr135 microsatellite FC931223_ssr135:135..149. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15198 contig Ccv1_Contig15198:44..781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_STAPU (Pyruvate dehydrogenase E1 component subunit beta OS=Staurastrum punctulatum GN=pdhB PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.432e-43
Identity = 81/91 (89.01%), Postives = 87/91 (95.60%), Query Frame = 3
Query:  411 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNR 683
            E+LLFEALREGL+EEMDRDP V VMGEDVGHYGGSYKVTKG A+KYGDLR+LDTPIAENSFTGM IGAAMTGLRP+VEGMNMGFLLLAFN+
Sbjct:    3 EMLLFEALREGLQEEMDRDPKVLVMGEDVGHYGGSYKVTKGFAEKYGDLRLLDTPIAENSFTGMAIGAAMTGLRPVVEGMNMGFLLLAFNQ 93          

HSP 2 Score: 26.5646 bits (57), Expect = 1.432e-43
Identity = 10/14 (71.43%), Postives = 11/14 (78.57%), Query Frame = 1
Query:  691 HCGMLHYTSGGQFT 732
            + GMLHYTSG  FT
Sbjct:   97 NAGMLHYTSGANFT 110          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_ZYGCR (Pyruvate dehydrogenase E1 component subunit beta OS=Zygnema circumcarinatum GN=pdhB PE=3 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 1.432e-43
Identity = 79/91 (86.81%), Postives = 87/91 (95.60%), Query Frame = 3
Query:  411 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNR 683
            E+LLFEALR+GL+EEMDRDP V VMGEDVGHYGGSYKVTKG A++YGDLR+LDTPIAENSFTGM IGAAMTGLRP+VEGMNMGFLLLAFN+
Sbjct:    3 EVLLFEALRQGLQEEMDRDPRVMVMGEDVGHYGGSYKVTKGFAERYGDLRLLDTPIAENSFTGMAIGAAMTGLRPVVEGMNMGFLLLAFNQ 93          

HSP 2 Score: 28.8758 bits (63), Expect = 1.432e-43
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 1
Query:  691 HCGMLHYTSGGQFT 732
            + GMLHYTSGG FT
Sbjct:   97 NAGMLHYTSGGNFT 110          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_CHAGL (Pyruvate dehydrogenase E1 component subunit beta OS=Chaetosphaeridium globosum GN=pdhB PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.853e-41
Identity = 78/91 (85.71%), Postives = 84/91 (92.31%), Query Frame = 3
Query:  411 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNR 683
            E+LLFEALR+ L+EEM RDP V VMGEDVGHYGGSYKVTKG  +KYGDLR+LDTPIAENSFTGM IGAAMTGLRPIVEGMNMGFLLLAFN+
Sbjct:    3 EVLLFEALRDALDEEMQRDPSVLVMGEDVGHYGGSYKVTKGFHEKYGDLRLLDTPIAENSFTGMAIGAAMTGLRPIVEGMNMGFLLLAFNQ 93          

HSP 2 Score: 26.9498 bits (58), Expect = 2.853e-41
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 1
Query:  691 HCGMLHYTSGGQF 729
            + GMLHYTSGG F
Sbjct:   97 NAGMLHYTSGGNF 109          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_CHAVU (Pyruvate dehydrogenase E1 component subunit beta OS=Chara vulgaris GN=pdhB PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 8.898e-40
Identity = 72/91 (79.12%), Postives = 84/91 (92.31%), Query Frame = 3
Query:  411 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNR 683
            E LL+EAL EG+ EE++RDP V V+GED+GHYGGSYKVTKGL +KYG+LR+LDTPIAENSFTG+ IGAAMTGLRPI+EGMNMGFLLLAFN+
Sbjct:    3 EKLLYEALNEGIHEEIERDPKVFVIGEDIGHYGGSYKVTKGLFEKYGNLRILDTPIAENSFTGIAIGAAMTGLRPIIEGMNMGFLLLAFNQ 93          

HSP 2 Score: 28.8758 bits (63), Expect = 8.898e-40
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 1
Query:  691 HCGMLHYTSGGQFT 732
            + GMLHYTSGG FT
Sbjct:   97 NAGMLHYTSGGNFT 110          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_PORYE (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra yezoensis GN=pdhB PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.996e-37
Identity = 71/91 (78.02%), Postives = 80/91 (87.91%), Query Frame = 3
Query:  411 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNR 683
            ++ +F+ALR   +EEM +DP VCV+GEDVGHYGGSYKVTK L  KYGDLRVLDTPIAENSFTGM IGAA+TGLRPIVEGMNM FLLLAFN+
Sbjct:    3 KIFMFDALRAATDEEMAKDPTVCVIGEDVGHYGGSYKVTKDLHSKYGDLRVLDTPIAENSFTGMAIGAAITGLRPIVEGMNMSFLLLAFNQ 93          

HSP 2 Score: 25.7942 bits (55), Expect = 2.996e-37
Identity = 10/14 (71.43%), Postives = 11/14 (78.57%), Query Frame = 1
Query:  691 HCGMLHYTSGGQFT 732
            + GML YTSGG FT
Sbjct:   97 NAGMLRYTSGGNFT 110          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_CYAME (Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidioschyzon merolae GN=pdhB PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.997e-37
Identity = 71/92 (77.17%), Postives = 81/92 (88.04%), Query Frame = 3
Query:  408 HELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNR 683
            H+L ++EALRE ++EEM RD  V V+GEDVGHYGGSYKVTK L  KYGDLRVLDTPIAENSFTGM IGAAMTGL+P+VEGMN+ FLLLAFN+
Sbjct:    3 HKLFMYEALREAIDEEMARDKRVFVLGEDVGHYGGSYKVTKQLHTKYGDLRVLDTPIAENSFTGMAIGAAMTGLKPVVEGMNLSFLLLAFNQ 94          

HSP 2 Score: 25.409 bits (54), Expect = 2.997e-37
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 1
Query:  691 HCGMLHYTSGGQFT 732
            + GMLHYTSGG ++
Sbjct:   98 NAGMLHYTSGGNWS 111          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_PORPU (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra purpurea GN=pdhB PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.907e-36
Identity = 70/91 (76.92%), Postives = 80/91 (87.91%), Query Frame = 3
Query:  411 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNR 683
            ++ +F+ALR   +EEM++D  VCV+GEDVGHYGGSYKVTK L  KYGDLRVLDTPIAENSFTGM IGAA+TGLRPIVEGMNM FLLLAFN+
Sbjct:    3 KVFMFDALRAATDEEMEKDLTVCVIGEDVGHYGGSYKVTKDLHSKYGDLRVLDTPIAENSFTGMAIGAAITGLRPIVEGMNMSFLLLAFNQ 93          

HSP 2 Score: 25.7942 bits (55), Expect = 1.907e-36
Identity = 10/14 (71.43%), Postives = 11/14 (78.57%), Query Frame = 1
Query:  691 HCGMLHYTSGGQFT 732
            + GML YTSGG FT
Sbjct:   97 NAGMLRYTSGGNFT 110          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_GRATL (Pyruvate dehydrogenase E1 component subunit beta OS=Gracilaria tenuistipitata var. liui GN=pdhB PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.060e-35
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 3
Query:  411 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNR 683
            E+L+F+ALRE  +EEM  D  V ++GEDVGHYGGSYKVTK L  KYGDLRVLDTPIAENSF GM IGAA+TGLRPIVEGMNM FLLLAFN+
Sbjct:    3 EVLMFDALREATDEEMQNDSSVFILGEDVGHYGGSYKVTKDLHSKYGDLRVLDTPIAENSFMGMAIGAAITGLRPIVEGMNMSFLLLAFNQ 93          

HSP 2 Score: 23.8682 bits (50), Expect = 2.060e-35
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 1
Query:  691 HCGMLHYTSGGQF 729
            + GML YTSGG F
Sbjct:   97 NAGMLRYTSGGNF 109          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_CYACA (Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidium caldarium GN=pdhB PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.707e-34
Identity = 69/90 (76.67%), Postives = 79/90 (87.78%), Query Frame = 3
Query:  414 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNR 683
            + L+EALR  ++EEM +D +V ++GEDVGHYGGSYKVTK L  KYGDLRVLD PIAENSFTGM IGAAMTGLRPIVEGMNMGF+LLAFN+
Sbjct:    4 MFLYEALRAAIDEEMGKDSNVFIVGEDVGHYGGSYKVTKDLHVKYGDLRVLDAPIAENSFTGMAIGAAMTGLRPIVEGMNMGFMLLAFNQ 93          

HSP 2 Score: 21.1718 bits (43), Expect = 1.707e-34
Identity = 8/10 (80.00%), Postives = 8/10 (80.00%), Query Frame = 1
Query:  700 MLHYTSGGQF 729
            ML YTSGG F
Sbjct:  100 MLQYTSGGNF 109          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_MESVI (Pyruvate dehydrogenase E1 component subunit beta OS=Mesostigma viride GN=pdhB PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.203e-28
Identity = 59/88 (67.05%), Postives = 72/88 (81.82%), Query Frame = 3
Query:  420 LFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNR 683
            LFEAL   ++EEM R+  V ++GED+GHYGGSYKVT+ L  KYG+ RV+DTPIAENSF G  IGAAMTGL  +VEGMNMGF+LLAF++
Sbjct:    6 LFEALNMAIDEEMARNDKVALLGEDIGHYGGSYKVTQNLYAKYGEHRVIDTPIAENSFVGAAIGAAMTGLVTVVEGMNMGFILLAFSQ 93          
The following BLAST results are available for this feature:
BLAST of FC931223 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
ODPB_STAPU1.432e-4389.01Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ZYGCR1.432e-4386.81Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHAGL2.853e-4185.71Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHAVU8.898e-4079.12Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PORYE2.996e-3778.02Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CYAME2.997e-3777.17Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PORPU1.907e-3676.92Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_GRATL2.060e-3576.92Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CYACA1.707e-3476.67Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_MESVI8.203e-2867.05Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionC34102H02EF PostHarvP1 Citrus clementina cDNA clone C34102H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931223 ID=FC931223; Name=FC931223; organism=Citrus clementina; type=EST; length=736bp
AGCTCATAAACACACAAGCTTGCTTGCCTCAATTTCTCCGCCCATTTTTC
CAATATAAATTTTAAACAAACATTCAATTTCTTTTCGCCATTTCCTTCTT
TCAGTTAATAAGAAAAGCCTCTCGCAGTTCGTCAAATCGAATCGAATCGA
ATCCAATGGCTGCAATTTTCCAGGGCGTGGGAGCTGCAACGGCTTTATCA
CCGTCCAATTGCTTCGATTCTAAGAAGTCCCAGCTCTCAACTCGCAGATC
TCTCTCAGGACGGAAACCATGGTTCTTAGTTGTCAGATCTGATGGAAGCG
TCAACTTAGGCTCGAATCAAAGATCCCGGAGGACTCAACAGTTGATCACT
AATGCAGTTGCAACGAAGGCTGATTCGGCAGCTTCTACTTCGGCATCAAA
GCAAGGGCACGAACTTTTACTTTTTGAAGCTCTACGAGAAGGCTTGGAAG
AAGAAATGGACAGAGATCCACATGTATGTGTCATGGGTGAAGATGTTGGT
CACTATGGGGGTTCGTACAAAGTGACCAAAGGCCTGGCTGATAAGTATGG
GGATCTCAGGGTTCTTGACACCCCTATTGCTGAGAACTCTTTCACTGGTA
TGGGCATTGGGGCTGCCATGACTGGCTTGAGGCCAATTGTTGAAGGAATG
AACATGGGATTTCTTCTTTTAGCTTTCAACAGATCTCCAACACTGTGGTA
TGCTCCACTATACTTCTGGTGGGCAGTTTACATACC
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