FC931225

Overview
NameFC931225
Unique NameFC931225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig657 contig Ccv1_Contig657:616..1330. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931225 vs. ExPASy Swiss-Prot
Match: ZDS_CAPAN (Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Capsicum annuum GN=ZDS PE=1 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.040e-60
Identity = 116/137 (84.67%), Postives = 127/137 (92.70%), Query Frame = 2
Query:    2 LQCVLTPGDPYMPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 412
            LQCVLTPGDPYMPLPN+EIIRRV+KQVLALFPSSQGLEV WSSVVKIGQSLYREGPGKDPFRPDQKTPV+NFFLAGSYTKQDYIDSMEGATLSGRQASAYIC+AGE+L+ALRK++AA E  E +    + +DELSLV
Sbjct:  453 LQCVLTPGDPYMPLPNEEIIRRVSKQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQKTPVENFFLAGSYTKQDYIDSMEGATLSGRQASAYICDAGEQLLALRKKIAAAELNE-ISKGVSLSDELSLV 588          
BLAST of FC931225 vs. ExPASy Swiss-Prot
Match: ZDS_TARER (Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Tagetes erecta PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.752e-60
Identity = 116/137 (84.67%), Postives = 124/137 (90.51%), Query Frame = 2
Query:    2 LQCVLTPGDPYMPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 412
            LQCVLTPGDPYMPLPN+EII RV+KQVLALFPSSQGLEV WSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASA+IC+AGEEL ALRKQLAA +S + +       DE+SLV
Sbjct:  456 LQCVLTPGDPYMPLPNEEIISRVSKQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAFICDAGEELAALRKQLAAIQSIDSIGV-----DEMSLV 587          
BLAST of FC931225 vs. ExPASy Swiss-Prot
Match: ZDS_SOLLC (Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Solanum lycopersicum GN=ZDS PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.909e-58
Identity = 112/137 (81.75%), Postives = 123/137 (89.78%), Query Frame = 2
Query:    2 LQCVLTPGDPYMPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 412
            LQCVLTPGDPYMPL NDEII+RV KQVLALFPSSQGLEV WSSV+KIGQSLYREGPGKDPFRPDQKTPV+NFFLAGSYTKQDYIDSMEGATLSGRQASAYICN GE+L+ALRK++ A E  + +    + +DELSLV
Sbjct:  453 LQCVLTPGDPYMPLSNDEIIKRVTKQVLALFPSSQGLEVTWSSVLKIGQSLYREGPGKDPFRPDQKTPVENFFLAGSYTKQDYIDSMEGATLSGRQASAYICNVGEQLMALRKKITAAELND-ISKGVSLSDELSLV 588          
BLAST of FC931225 vs. ExPASy Swiss-Prot
Match: ZDS_NARPS (Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=ZDS1 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.909e-58
Identity = 110/137 (80.29%), Postives = 122/137 (89.05%), Query Frame = 2
Query:    2 LQCVLTPGDPYMPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 412
            +Q VLTPGDPYMPLPND II RV KQVL LFPSSQGLEV+WSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQA+AYIC+AGE+L ALRK++AA   ++ +   +  +DELSLV
Sbjct:  438 IQAVLTPGDPYMPLPNDAIIERVRKQVLDLFPSSQGLEVLWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQAAAYICSAGEDLAALRKKIAADHPEQLINKDSNVSDELSLV 574          
BLAST of FC931225 vs. ExPASy Swiss-Prot
Match: ZDS_ARATH (Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=ZDS1 PE=2 SV=3)

HSP 1 Score: 205.682 bits (522), Expect = 2.045e-52
Identity = 103/137 (75.18%), Postives = 114/137 (83.21%), Query Frame = 2
Query:    2 LQCVLTPGDPYMPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 412
            LQCVLTPGDPYM +PND+II +VA QV  LFPSS+GLEV WSSVVKI QSLYRE PGKDPFRPDQKTP+KNFFLAGSYTKQDYIDSMEGATLSGRQAS+YIC+AGEEL  L K+L++        + T   DELSLV
Sbjct:  430 LQCVLTPGDPYMRMPNDKIIEKVAMQVTELFPSSRGLEVTWSSVVKIAQSLYREAPGKDPFRPDQKTPIKNFFLAGSYTKQDYIDSMEGATLSGRQASSYICDAGEELAELNKKLSS--------SATAVPDELSLV 558          
BLAST of FC931225 vs. ExPASy Swiss-Prot
Match: ZDS_MAIZE (Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Zea mays GN=ZDS1 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.015e-51
Identity = 97/124 (78.23%), Postives = 110/124 (88.71%), Query Frame = 2
Query:    2 LQCVLTPGDPYMPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAYICNAGEELVALRKQLAAFESQEQM 373
            +Q VLTPGDPYMPLPN+EII +V KQV+ LFPSS+GLEV WSSVVKIGQSLYRE PG DPFRPDQKTPVKNFFL+GSYTKQDYIDSMEGATLSGR+ SAYIC AGEEL+ALRK+L   + ++ +
Sbjct:  438 IQAVLTPGDPYMPLPNEEIISKVQKQVVELFPSSRGLEVTWSSVVKIGQSLYREAPGNDPFRPDQKTPVKNFFLSGSYTKQDYIDSMEGATLSGRRTSAYICGAGEELLALRKKLLIDDGEKAL 561          
BLAST of FC931225 vs. ExPASy Swiss-Prot
Match: ZDS_SYNY3 (Zeta-carotene desaturase OS=Synechocystis sp. (strain PCC 6803) GN=crtQ PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.800e-32
Identity = 69/101 (68.32%), Postives = 78/101 (77.23%), Query Frame = 2
Query:    2 LQCVLTPGDPYMPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAYI 304
            LQ VLTPGDP+M   N+ I  RV KQV ALFPS+  L + W SV+K+ QSLYRE PG D FRP Q TP+ NFFLAGSYT+QDYIDSMEGATLSGRQA+  I
Sbjct:  374 LQLVLTPGDPFMKESNEAIAYRVLKQVKALFPSAADLNMTWYSVIKLAQSLYREAPGMDLFRPSQATPIANFFLAGSYTQQDYIDSMEGATLSGRQAAQAI 474          
BLAST of FC931225 vs. ExPASy Swiss-Prot
Match: ZDS_ANASP (Zeta-carotene desaturase OS=Anabaena sp. (strain PCC 7120) GN=crtQ PE=3 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 8.932e-32
Identity = 66/101 (65.35%), Postives = 80/101 (79.21%), Query Frame = 2
Query:    2 LQCVLTPGDPYMPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAYI 304
            LQ VLTPGDP++   N+ I + V KQV  LFPSS+ L + W SVVK+ QSLYRE PG D +RP+QKTP+ NFFLAGSYT+QDYIDSMEGAT+SGR+A+  I
Sbjct:  373 LQLVLTPGDPFIKESNEAIAQHVLKQVYELFPSSRELNMTWYSVVKLAQSLYREAPGMDVYRPNQKTPIANFFLAGSYTQQDYIDSMEGATVSGRRAAKVI 473          
BLAST of FC931225 vs. ExPASy Swiss-Prot
Match: CRTI_SYNY3 (Phytoene dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=pds PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.887e-14
Identity = 41/105 (39.05%), Postives = 61/105 (58.10%), Query Frame = 2
Query:    2 LQCVLTPGDPYMPLPNDEIIRRVAKQVLALFPS----SQGLEVIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAYI 304
            L+ VL P   ++   ++EI+     ++  LFP          ++ S VVK  +S+Y+  PG+   RPDQ+T V NF+LAG +T Q Y+ SMEGA LSG+Q +  I
Sbjct:  349 LELVLAPAQDWIGKSDEEIVAATMAEIKQLFPQHFNGDNPARLLKSHVVKTPRSVYKATPGRQACRPDQRTSVPNFYLAGDFTMQKYLGSMEGAVLSGKQCAQAI 453          
BLAST of FC931225 vs. ExPASy Swiss-Prot
Match: CRTI_SOLLC (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Solanum lycopersicum GN=PDS PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.924e-14
Identity = 43/114 (37.72%), Postives = 65/114 (57.02%), Query Frame = 2
Query:    2 LQCVLTPGDPYMPLPNDEIIRRVAKQVLALFPSSQGLE-----VIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAYICNAGEELV 328
            L+ V  P + ++   + EII    K++  LFP     +     ++   VVK  +S+Y+  PG +P RP Q++P++ F+LAG YTKQ Y+ SMEGA LSG+  +  I    E LV
Sbjct:  457 LELVFAPAEEWISRSDSEIIDATMKELATLFPDEISADQSKAKILKYHVVKTPRSVYKTVPGCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYELLV 570          
The following BLAST results are available for this feature:
BLAST of FC931225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
ZDS_CAPAN2.040e-6084.67Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
ZDS_TARER7.752e-6084.67Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
ZDS_SOLLC1.909e-5881.75Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
ZDS_NARPS1.909e-5880.29Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
ZDS_ARATH2.045e-5275.18Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
ZDS_MAIZE1.015e-5178.23Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
ZDS_SYNY31.800e-3268.32Zeta-carotene desaturase OS=Synechocystis sp. (str... [more]
ZDS_ANASP8.932e-3265.35Zeta-carotene desaturase OS=Anabaena sp. (strain P... [more]
CRTI_SYNY32.887e-1439.05Phytoene dehydrogenase OS=Synechocystis sp. (strai... [more]
CRTI_SOLLC4.924e-1437.72Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]

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Properties
Property NameValue
Genbank descriptionC34102H04EF PostHarvP1 Citrus clementina cDNA clone C34102H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931225 ID=FC931225; Name=FC931225; organism=Citrus clementina; type=EST; length=715bp
ACTCCAATGTGTTTTGACGCCTGGCGATCCTTACATGCCCTTACCAAATG
ATGAAATCATAAGGAGAGTGGCAAAGCAGGTTTTAGCTCTATTTCCATCA
TCCCAAGGTTTAGAAGTTATTTGGTCATCTGTTGTCAAAATCGGGCAATC
TTTGTACCGTGAGGGACCTGGTAAAGACCCCTTCAGACCTGATCAAAAGA
CACCTGTGAAGAACTTCTTCCTTGCTGGCTCGTATACAAAACAGGATTAC
ATAGATAGTATGGAAGGAGCAACTTTGTCTGGTAGACAAGCCTCAGCCTA
CATATGCAATGCCGGGGAAGAATTAGTAGCACTGAGGAAGCAGCTTGCTG
CCTTTGAATCTCAAGAACAAATGGAAGCTCCAACTACTACTAATGATGAA
CTAAGTCTTGTGTGATCGCAATCTGTTTGAGGTGCAGCGGCAGGAGTAAG
GTTTTTCCACATCTAAACGCCCTTCCCTTTTAGAGGATTACATAGATAGT
ATGGGATGAGCAATTTGCTGCCTTAATATGAATCTCAAGAACAAATGGAA
AATCCAGCTTTCACTGATGAGATGATGCAGCTGGAGTAAGGGTTTCCAAT
ACCTATGTAATTTCAATGAGATAGCCAATTTTCATAAAATTCATTAGTAA
GTTAATGGACATGAGGCCTAACCTACTATGTATGACTGTTTCTCTTACGA
GACAGCAATTTGTGC
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