FC931228

Overview
NameFC931228
Unique NameFC931228
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931228_ssr14 microsatellite FC931228_ssr14:14..25. BLAST: Citrus ESTs to Prunus persica proteins V1
FC931228_ssr485 microsatellite FC931228_ssr485:485..496. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS19_EMENI (40S ribosomal protein S19 OS=Emericella nidulans GN=rps19 PE=3 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 1.972e-70
Identity = 130/140 (92.86%), Postives = 135/140 (96.43%), Query Frame = 2
Query:   62 MGGVTVRDVDAQKFISAYSAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWFYVRAAACARHIYMRKTVGVGRLRKAHGSTKNRGSRPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIAKTTV 481
            MGGVTVRDVDAQKFI AY+AFLKRQGKLPIPGWVDTVKTSASNELPPQDADW+YVRAAA ARHIY+RKTVGVGRLRK HGSTKNRGSRPAHHVDASG+VDRK LQ+LEKIGVLE DEEKGGRRITQSGQRDLDRIAKTTV
Sbjct:    1 MGGVTVRDVDAQKFIVAYAAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWYYVRAAAVARHIYLRKTVGVGRLRKVHGSTKNRGSRPAHHVDASGAVDRKVLQSLEKIGVLEQDEEKGGRRITQSGQRDLDRIAKTTV 140          
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS19B_YEAST (40S ribosomal protein S19-B OS=Saccharomyces cerevisiae GN=RPS19B PE=1 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 8.064e-48
Identity = 94/141 (66.67%), Postives = 117/141 (82.98%), Query Frame = 2
Query:   62 MGGVTVRDVDAQKFISAYSAFLKRQGKLPIPGWVDTVKTSASNELPPQDAD-WFYVRAAACARHIYMRKTVGVGRLRKAHGSTKNRGSRPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIAKTTV 481
            M GV+VRDV AQ FI+AY++FL+RQGKL +PG+VD VKTS+ NE+PPQDA+ WFY RAA+ ARHIYMRK VGVG+L K +G  K+RG RP  H+DASGS++RK LQALEKIG++E    KGGRRI+++GQRDLDRIA  T+
Sbjct:    1 MAGVSVRDVAAQDFINAYASFLQRQGKLEVPGYVDIVKTSSGNEMPPQDAEGWFYKRAASVARHIYMRKQVGVGKLNKLYGGAKSRGVRPYKHIDASGSINRKVLQALEKIGIVEI-SPKGGRRISENGQRDLDRIAAQTL 140          
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS19A_YEAST (40S ribosomal protein S19-A OS=Saccharomyces cerevisiae GN=RPS19A PE=1 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 1.375e-47
Identity = 94/141 (66.67%), Postives = 117/141 (82.98%), Query Frame = 2
Query:   62 MGGVTVRDVDAQKFISAYSAFLKRQGKLPIPGWVDTVKTSASNELPPQDAD-WFYVRAAACARHIYMRKTVGVGRLRKAHGSTKNRGSRPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIAKTTV 481
            M GV+VRDV AQ FI+AY++FL+RQGKL +PG+VD VKTS+ NE+PPQDA+ WFY RAA+ ARHIYMRK VGVG+L K +G  K+RG RP  H+DASGS++RK LQALEKIG++E    KGGRRI+++GQRDLDRIA  T+
Sbjct:    1 MPGVSVRDVAAQDFINAYASFLQRQGKLEVPGYVDIVKTSSGNEMPPQDAEGWFYKRAASVARHIYMRKQVGVGKLNKLYGGAKSRGVRPYKHIDASGSINRKVLQALEKIGIVEI-SPKGGRRISENGQRDLDRIAAQTL 140          
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS19A_SCHPO (40S ribosomal protein S19-A OS=Schizosaccharomyces pombe GN=rps19a PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.002e-47
Identity = 92/136 (67.65%), Postives = 107/136 (78.68%), Query Frame = 2
Query:   62 MGGVTVRDVDAQKFISAYSAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWFYVRAAACARHIYMRKTVGVGRLRKAHGSTKNRGSRPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIA 469
            M GV+V+DVDAQKFI+AY+AFLKR GK+  P W+D VKT    EL P D DW+YVRAAA ARHIY+RK VGVGRL K +G + NRG RP+HH D SGSV RK +Q+LEKIGVLE   + GGRRI+Q GQRDLDRIA
Sbjct:    1 MAGVSVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLE-KSDNGGRRISQQGQRDLDRIA 135          
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS19B_SCHPO (40S ribosomal protein S19-B OS=Schizosaccharomyces pombe GN=rps19b PE=2 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.164e-46
Identity = 91/136 (66.91%), Postives = 107/136 (78.68%), Query Frame = 2
Query:   62 MGGVTVRDVDAQKFISAYSAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWFYVRAAACARHIYMRKTVGVGRLRKAHGSTKNRGSRPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIA 469
            M GV+V+DVDAQ+FI+AY+AFLKR GK+  P W+D VKT    EL P D DW+YVRAAA ARHIY+RK VGVGRL K +G + NRG RP+HH D SGSV RK +Q+LEKIGVLE   + GGRRI+Q GQRDLDRIA
Sbjct:    1 MAGVSVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLE-KSDNGGRRISQQGQRDLDRIA 135          
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS19_BRABE (40S ribosomal protein S19 OS=Branchiostoma belcheri GN=RPS19 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.178e-36
Identity = 76/135 (56.30%), Postives = 96/135 (71.11%), Query Frame = 2
Query:   65 GGVTVRDVDAQKFISAYSAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWFYVRAAACARHIYMRKTVGVGRLRKAHGSTKNRGSRPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIA 469
            GGVTV+DV+ Q+F+ A++AFLK+ GKL +P WVD VKT+   EL P D DWFY+RAA+ ARH+YMR  VGVG + K +G  K RG++PA     S  V R  LQ+LE I ++E D   GGRR+T  GQRDLDRIA
Sbjct:    3 GGVTVKDVNQQEFVKAFAAFLKKSGKLKLPEWVDLVKTAPHKELAPYDPDWFYLRAASTARHLYMRGGVGVGAMCKIYGGRKRRGTKPAKFRVCSRGVSRTVLQSLEGIKMVEKD-AAGGRRLTSQGQRDLDRIA 136          
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS19_ORYSJ (40S ribosomal protein S19 OS=Oryza sativa subsp. japonica GN=RPS19A PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.590e-35
Identity = 68/132 (51.52%), Postives = 94/132 (71.21%), Query Frame = 2
Query:   74 TVRDVDAQKFISAYSAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWFYVRAAACARHIYMRKTVGVGRLRKAHGSTKNRGSRPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIA 469
            TV+DV+  +F+ AYSA LKR GK+ +P WVD VKT+   ELPP D DW+Y RAA+ AR IY+R+ +GVG  +K +G  +  GSRP H   +SG++ R  LQ L+K+G+++ D  KGGR IT  G+RDLD++A
Sbjct:    8 TVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVD-PKGGRLITSQGRRDLDQVA 138          
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS19_RAT (40S ribosomal protein S19 OS=Rattus norvegicus GN=Rps19 PE=2 SV=3)

HSP 1 Score: 147.517 bits (371), Expect = 5.994e-35
Identity = 72/136 (52.94%), Postives = 96/136 (70.59%), Query Frame = 2
Query:   62 MGGVTVRDVDAQKFISAYSAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWFYVRAAACARHIYMRKTVGVGRLRKAHGSTKNRGSRPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIA 469
            M GVTV+DV+ Q+F+ A +AFLK+ GKL +P WVDTVK +   EL P D +WFY RAA+ ARH+Y+R   GVG + K +G  +  G RP+H    S SV R+ LQALE + ++E D++ GGR++T  GQRDLDRIA
Sbjct:    1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVRPSHFSRGSKSVARRVLQALEGLKMVEKDQD-GGRKLTPQGQRDLDRIA 135          
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS19_MOUSE (40S ribosomal protein S19 OS=Mus musculus GN=Rps19 PE=1 SV=3)

HSP 1 Score: 147.517 bits (371), Expect = 5.994e-35
Identity = 72/136 (52.94%), Postives = 96/136 (70.59%), Query Frame = 2
Query:   62 MGGVTVRDVDAQKFISAYSAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWFYVRAAACARHIYMRKTVGVGRLRKAHGSTKNRGSRPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIA 469
            M GVTV+DV+ Q+F+ A +AFLK+ GKL +P WVDTVK +   EL P D +WFY RAA+ ARH+Y+R   GVG + K +G  +  G RP+H    S SV R+ LQALE + ++E D++ GGR++T  GQRDLDRIA
Sbjct:    1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVRPSHFSRGSKSVARRVLQALEGLKMVEKDQD-GGRKLTPQGQRDLDRIA 135          
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS19_PONAB (40S ribosomal protein S19 OS=Pongo abelii GN=RPS19 PE=2 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 2.975e-34
Identity = 71/136 (52.21%), Postives = 95/136 (69.85%), Query Frame = 2
Query:   62 MGGVTVRDVDAQKFISAYSAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWFYVRAAACARHIYMRKTVGVGRLRKAHGSTKNRGSRPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIA 469
            M GVTV+DV+ Q+F+ A +AFLK+ GKL +P WVDTVK +   EL P D +WFY RAA+ ARH+Y+R   GVG + K +G  +  G  P+H    S SV R+ LQALE + ++E D++ GGR++T  GQRDLDRIA
Sbjct:    1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQD-GGRKLTPQGQRDLDRIA 135          
The following BLAST results are available for this feature:
BLAST of FC931228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RS19_EMENI1.972e-7092.8640S ribosomal protein S19 OS=Emericella nidulans G... [more]
RS19B_YEAST8.064e-4866.6740S ribosomal protein S19-B OS=Saccharomyces cerev... [more]
RS19A_YEAST1.375e-4766.6740S ribosomal protein S19-A OS=Saccharomyces cerev... [more]
RS19A_SCHPO4.002e-4767.6540S ribosomal protein S19-A OS=Schizosaccharomyces... [more]
RS19B_SCHPO1.164e-4666.9140S ribosomal protein S19-B OS=Schizosaccharomyces... [more]
RS19_BRABE3.178e-3656.3040S ribosomal protein S19 OS=Branchiostoma belcher... [more]
RS19_ORYSJ4.590e-3551.5240S ribosomal protein S19 OS=Oryza sativa subsp. j... [more]
RS19_RAT5.994e-3552.9440S ribosomal protein S19 OS=Rattus norvegicus GN=... [more]
RS19_MOUSE5.994e-3552.9440S ribosomal protein S19 OS=Mus musculus GN=Rps19... [more]
RS19_PONAB2.975e-3452.2140S ribosomal protein S19 OS=Pongo abelii GN=RPS19... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34102H07EF PostHarvP1 Citrus clementina cDNA clone C34102H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931228 ID=FC931228; Name=FC931228; organism=Citrus clementina; type=EST; length=676bp
GGACGCCCAACGCCTCTCTCTCTCTAATCCCTACCCTTCGACCCCTCGAC
AAGTCGCCAAAATGGGTGGTGTTACCGTTCGCGATGTGGACGCGCAGAAG
TTCATCTCTGCCTACTCTGCTTTCCTGAAGCGTCAGGGAAAGCTCCCCAT
CCCCGGATGGGTTGACACTGTCAAGACCTCTGCTTCCAACGAGCTTCCTC
CCCAGGATGCTGACTGGTTCTACGTCCGCGCCGCCGCCTGTGCCCGTCAC
ATCTACATGCGCAAGACCGTCGGTGTCGGTCGTCTTCGCAAGGCCCACGG
CTCCACCAAGAACCGTGGCTCTCGCCCCGCCCACCACGTCGATGCCTCCG
GCTCCGTCGACCGCAAGGCCCTCCAGGCTCTTGAGAAGATCGGTGTCCTC
GAGACCGATGAGGAGAAGGGTGGTCGCCGCATCACTCAGAGCGGTCAGCG
TGATTTGGACCGTATTGCCAAGACCACCGTCGACGAGGAGGAGGAGTCTG
ATGAGGAATAAACGTATCGCAACGATGGGCTTTTAATAGTTCGGGGATAA
GTCGTTTGTTTTTGTGGTTTTGTCTTCGCTACGGCGGCAGGATTTTGGAA
ATGACGGCACATAAATAAAAATTCGGAGCTTGCGGTCCCGTGCGCGACTT
TACGTTTGATTCTTTTTTTTCTTGTT
back to top