FC931243

Overview
NameFC931243
Unique NameFC931243
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931243 vs. ExPASy Swiss-Prot
Match: SF3_HELAN (Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.151e-74
Identity = 129/190 (67.89%), Postives = 152/190 (80.00%), Query Frame = 2
Query:   77 MASFAGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGTPKTVRVERSADQVTNS--RVSSMFAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFTQKGNFSQLDNHEQVEAVTENAT 640
            M SF GTTQKC  CEKTVYLVD+L A+ +VYHKACFRCHHC  TLKLSN+ SF+GV+YC+ HFDQLFK TGSL+KSF+GTPK  + ER+  Q T S  R+SS F GT+DKC AC K VYPIE+V VDGT+YH+ACF+C HGGC ISPSNY+AHE RLYC+HHH QLF +KGN+SQL+  E V A  E+ T
Sbjct:    1 MKSFTGTTQKCTVCEKTVYLVDKLVANQRVYHKACFRCHHCNSTLKLSNFNSFDGVVYCRHHFDQLFKRTGSLEKSFDGTPK-FKPERTFSQETQSANRLSSFFEGTRDKCNACAKIVYPIERVKVDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLFKKKGNYSQLEVEETVAAPAESET 189          
BLAST of FC931243 vs. ExPASy Swiss-Prot
Match: CSRP3_MOUSE (Cysteine and glycine-rich protein 3 OS=Mus musculus GN=Csrp3 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.437e-18
Identity = 52/169 (30.77%), Postives = 79/169 (46.75%), Query Frame = 2
Query:   92 GTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTG----------------SLDKSFEGTPKTVRVERSADQVTNSRVSSMFAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCR 550
            G   KC ACEKTVY  +++  + + +HK CF C  C+  L  +   + E  +YCK  + + +   G                 L   F+ +PK  R   +++    S+ S+ F G  +KC  C K+VY  EKV   G  +HK CFRC   G  +  +N    +  LYC+
Sbjct:    5 GGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRRYGPKGIGFGQGAGCLSTDTGEHLGLQFQQSPKPARAATTSNP---SKFSAKF-GESEKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCK 169          
BLAST of FC931243 vs. ExPASy Swiss-Prot
Match: XIRP2_MOUSE (Xin actin-binding repeat-containing protein 2 OS=Mus musculus GN=Xirp2 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.452e-18
Identity = 38/79 (48.10%), Postives = 52/79 (65.82%), Query Frame = 2
Query:   71 RDMASFAGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSF 307
            ++ ++F    + C  C+KTVY ++ L AD + +HK+CFRCHHC   L L NY S  G +YCKPHF QLFK  G+ D+ F
Sbjct: 3245 QEESAFLSDKEICIICQKTVYPMECLIADKQNFHKSCFRCHHCSSKLSLGNYASLHGRIYCKPHFKQLFKSKGNYDEGF 3323          

HSP 2 Score: 79.337 bits (194), Expect = 2.148e-14
Identity = 33/80 (41.25%), Postives = 49/80 (61.25%), Query Frame = 2
Query:  374 SMFAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFTQKGNFSQLDNHEQ 613
            S F   ++ C+ C+KTVYP+E +  D  ++HK+CFRC H    +S  NY +   R+YC+ H  QLF  KGN+ +   H+Q
Sbjct: 3248 SAFLSDKEICIICQKTVYPMECLIADKQNFHKSCFRCHHCSSKLSLGNYASLHGRIYCKPHFKQLFKSKGNYDEGFGHKQ 3327          
BLAST of FC931243 vs. ExPASy Swiss-Prot
Match: CSRP3_HUMAN (Cysteine and glycine-rich protein 3 OS=Homo sapiens GN=CSRP3 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.452e-18
Identity = 54/171 (31.58%), Postives = 76/171 (44.44%), Query Frame = 2
Query:   92 GTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTG----------------SLDKSFEGTPKTVRVERSADQVTNSRVSSMFA--GTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCR 550
            G   KC ACEKTVY  +++  + + +HK CF C  C+  L  +   + E  +YCK  + + +   G                 L   F+ +PK  R       VT S  S   A  G  +KC  C K+VY  EKV   G  +HK CFRC   G  +  +N    +  LYC+
Sbjct:    5 GGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRRYGPKGIGYGQGAGCLSTDTGEHLGLQFQQSPKPAR------SVTTSNPSKFTAKFGESEKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCK 169          
BLAST of FC931243 vs. ExPASy Swiss-Prot
Match: CSRP3_BOVIN (Cysteine and glycine-rich protein 3 OS=Bos taurus GN=CSRP3 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.452e-18
Identity = 54/171 (31.58%), Postives = 76/171 (44.44%), Query Frame = 2
Query:   92 GTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTG----------------SLDKSFEGTPKTVRVERSADQVTNSRVSSMFA--GTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCR 550
            G   KC ACEKTVY  +++  + + +HK CF C  C+  L  +   + E  +YCK  + + +   G                 L   F+ +PK  R        T S   S FA  G  +KC  C K+VY  EKV   G  +HK CFRC   G  +  +N    +  LYC+
Sbjct:    5 GGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRRYGPKGIGYGQGAGCLSTDTGEHLGLQFQQSPKQAR------SATTSSNPSKFAKFGESEKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCK 169          
BLAST of FC931243 vs. ExPASy Swiss-Prot
Match: CSRP3_RAT (Cysteine and glycine-rich protein 3 OS=Rattus norvegicus GN=Csrp3 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17
Identity = 50/169 (29.59%), Postives = 78/169 (46.15%), Query Frame = 2
Query:   92 GTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTG----------------SLDKSFEGTPKTVRVERSADQVTNSRVSSMFAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCR 550
            G   KC AC+KTVY  +++  + + +HK CF C  C+  L  +   + E  +YCK  + + +   G                 L   F+ +PK  R   +++    S+ S+ F G  +KC  C K+VY  EKV   G  +HK CF C   G  +  +N    +  LYC+
Sbjct:    5 GGGAKCGACDKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRKYGPKGIGFGQGAGCLSTDTGEHLGLQFQQSPKPARAATTSNP---SKFSAKF-GESEKCPRCGKSVYAAEKVMGGGKPWHKTCFPCAICGKSLESTNVTDKDGELYCK 169          
BLAST of FC931243 vs. ExPASy Swiss-Prot
Match: CRIP2_BOVIN (Cysteine-rich protein 2 OS=Bos taurus GN=CRIP2 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.039e-17
Identity = 56/184 (30.43%), Postives = 85/184 (46.20%), Query Frame = 2
Query:  104 KCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYC-KPHFDQLFKMTG--------------SLDKSFEGTPKTVRVERSADQVTN------SRVSSM--FAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYC-RHHHNQLFTQKG 583
            KC  C+KTVY  +++++  K +H+ C RC HC  TL    +   +G  +C KP +  LF   G              S +K     P  V V R+ ++  +      S+ SS+  F G  + C  C K VY  EKV   G  +H+ C RC   G  ++P  +  H+ + YC +  +  LF  KG
Sbjct:    4 KCPKCDKTVYFAEKVSSLGKDWHRFCLRCEHCSKTLTPGGHAEHDGKPFCHKPCYATLFGPKGVNIGGAGSYIYEKPSAEKPQVTGPIEVPVARTEERKASGPPKGPSKASSVTTFTGEPNMCPRCNKRVYFAEKVTSLGKDWHRPCLRCERCGKTLTPGGHAEHDGQPYCHKPCYGILFGPKG 187          
BLAST of FC931243 vs. ExPASy Swiss-Prot
Match: LIMA1_HUMAN (LIM domain and actin-binding protein 1 OS=Homo sapiens GN=LIMA1 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.887e-17
Identity = 44/124 (35.48%), Postives = 66/124 (53.23%), Query Frame = 2
Query:   68 PRDMASF-AGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGTP---------KTVRVERSADQVTNSRVSSMFAGTQDKCVA 409
            P+ M  F A   + C  C+KTVY +++L A+ +V+H +CFRC +C   L L  Y S  G +YCKPHF+QLFK  G+ D+ F   P         +   +     Q+ N+R +    G +D  +A
Sbjct:  376 PKAMKKFQAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGHRPHKDLWASKNENEEILERPAQLANARETPHSPGVEDAPIA 499          

HSP 2 Score: 70.4774 bits (171), Expect = 9.977e-12
Identity = 33/101 (32.67%), Postives = 55/101 (54.46%), Query Frame = 2
Query:  317 PKTVRVERSADQVTNSR----VSSMFAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFTQKGNFSQLDNH 607
            PK +  +  A  ++ S     +    A  ++ CV C+KTVYP+E++  +   +H +CFRC++    +S   Y +   R+YC+ H NQLF  KGN+ +   H
Sbjct:  358 PKPLSPDSRASSLSESSPPKAMKKFQAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGH 458          
BLAST of FC931243 vs. ExPASy Swiss-Prot
Match: CSRP1_PONAB (Cysteine and glycine-rich protein 1 OS=Pongo abelii GN=CSRP1 PE=2 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 2.997e-16
Identity = 51/175 (29.14%), Postives = 79/175 (45.14%), Query Frame = 2
Query:   92 GTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGTPKTVR--------VERSADQVTNSRVSSMFA---GTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFTQKG 583
            G  +KC  C+KTVY  +++  +   +HK+CF C  CK  L  +        +YCK  + + +   G       GT  T +         E    + T +  +S FA   G  ++C  C + VY  EKV   G S+HKACFRC   G  +  +     +  +YC+  + + F  KG
Sbjct:    5 GGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEESPGHRPTTNPNASKFAQKIGGSERCPRCSQAVYAAEKVIGAGKSWHKACFRCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPKG 179          
BLAST of FC931243 vs. ExPASy Swiss-Prot
Match: CSRP1_HUMAN (Cysteine and glycine-rich protein 1 OS=Homo sapiens GN=CSRP1 PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 2.997e-16
Identity = 51/175 (29.14%), Postives = 79/175 (45.14%), Query Frame = 2
Query:   92 GTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGTPKTVR--------VERSADQVTNSRVSSMFA---GTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFTQKG 583
            G  +KC  C+KTVY  +++  +   +HK+CF C  CK  L  +        +YCK  + + +   G       GT  T +         E    + T +  +S FA   G  ++C  C + VY  EKV   G S+HKACFRC   G  +  +     +  +YC+  + + F  KG
Sbjct:    5 GGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPNASKFAQKIGGSERCPRCSQAVYAAEKVIGAGKSWHKACFRCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPKG 179          
The following BLAST results are available for this feature:
BLAST of FC931243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SF3_HELAN3.151e-7467.89Pollen-specific protein SF3 OS=Helianthus annuus G... [more]
CSRP3_MOUSE1.437e-1830.77Cysteine and glycine-rich protein 3 OS=Mus musculu... [more]
XIRP2_MOUSE2.452e-1848.10Xin actin-binding repeat-containing protein 2 OS=M... [more]
CSRP3_HUMAN2.452e-1831.58Cysteine and glycine-rich protein 3 OS=Homo sapien... [more]
CSRP3_BOVIN2.452e-1831.58Cysteine and glycine-rich protein 3 OS=Bos taurus ... [more]
CSRP3_RAT2.076e-1729.59Cysteine and glycine-rich protein 3 OS=Rattus norv... [more]
CRIP2_BOVIN6.039e-1730.43Cysteine-rich protein 2 OS=Bos taurus GN=CRIP2 PE=... [more]
LIMA1_HUMAN7.887e-1735.48LIM domain and actin-binding protein 1 OS=Homo sap... [more]
CSRP1_PONAB2.997e-1629.14Cysteine and glycine-rich protein 1 OS=Pongo abeli... [more]
CSRP1_HUMAN2.997e-1629.14Cysteine and glycine-rich protein 1 OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionC34103A10EF PostHarvP1 Citrus clementina cDNA clone C34103A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931243 ID=FC931243; Name=FC931243; organism=Citrus clementina; type=EST; length=702bp
GATCGAAGACTTTGTAAGTGTTCGAGGAAGTCTTAGCTTTCTTTGGTATT
TGTTGTGTGTGGAAGATCCAAGAGATATGGCGAGTTTTGCAGGGACAACA
CAGAAGTGTAAGGCGTGTGAGAAGACGGTATACTTGGTTGATCAACTTAC
TGCTGATAACAAAGTCTATCACAAGGCTTGTTTTAGATGCCACCATTGCA
AGGGCACCCTCAAGCTGAGCAACTATTGCTCCTTTGAGGGAGTTTTATAT
TGCAAGCCTCACTTTGATCAGCTGTTTAAGATGACTGGCAGCTTGGATAA
AAGTTTTGAAGGTACTCCAAAAACTGTTAGAGTTGAGAGATCTGCTGATC
AGGTCACAAATAGCAGAGTTTCAAGTATGTTTGCTGGAACTCAAGATAAA
TGCGTTGCTTGCAAGAAGACTGTTTACCCAATTGAAAAGGTGGCAGTTGA
TGGTACATCATACCATAAAGCCTGTTTCAGGTGCACCCATGGAGGTTGTG
TAATCAGCCCATCAAACTATGTGGCGCATGAGCATCGTCTCTACTGTAGG
CATCACCACAATCAGCTTTTCACGCAGAAGGGTAACTTCAGCCAACTTGA
CAACCATGAACAAGTTGAAGCGGTGACTGAGAACGCAACAGCTTAGTGAT
ACTGTGAAATTTTCTTCTGTTAATGTGACAATGTGTGATTGCTTCGGTTG
TG
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