FC931246

Overview
NameFC931246
Unique NameFC931246
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931246_ssr468 microsatellite FC931246_ssr468:468..479. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15122 contig Ccv1_Contig15122:368..1061. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931246 vs. ExPASy Swiss-Prot
Match: MDAR3_ARATH (Probable monodehydroascorbate reductase, cytoplasmic isoform 3 OS=Arabidopsis thaliana GN=At3g52880 PE=1 SV=1)

HSP 1 Score: 335.495 bits (859), Expect = 1.635e-91
Identity = 166/229 (72.49%), Postives = 192/229 (83.84%), Query Frame = 2
Query:    2 DIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPWCMPCLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQFAENKGGIKTDDFFRTSADDVYAVGDVXTFPMKLYREMRRVEHVDHAPQSAEQAVK 688
            D+++K+L+SATG +FKYQ L+IATGSTVLRLTDFGV+GAD+KNI YLREIDDADKLVE                YIGLELSA L+INN+DV+MV+PEPWCMP LFTADIAAFYE YY NKG+KIIKGTVA GFT   +GEVKEV+LKDGRTLEADIV+VGVG +PL SLFKGQ  E+KGGIKTD FF+TS  DVYAVGDV TFP+K+Y ++RRVEHVDH+ +SAEQAVK
Sbjct:   99 DLSAKSLVSATGDVFKYQTLIIATGSTVLRLTDFGVKGADSKNILYLREIDDADKLVEAIKAKKGGKAVVVGGGYIGLELSAVLRINNLDVTMVFPEPWCMPRLFTADIAAFYETYYTNKGVKIIKGTVASGFTAQPNGEVKEVQLKDGRTLEADIVIVGVGAKPLTSLFKGQVEEDKGGIKTDAFFKTSVPDVYAVGDVATFPLKMYGDVRRVEHVDHSRKSAEQAVK 327          
BLAST of FC931246 vs. ExPASy Swiss-Prot
Match: MDARS_CUCSA (Monodehydroascorbate reductase, seedling isozyme OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 335.109 bits (858), Expect = 2.136e-91
Identity = 168/229 (73.36%), Postives = 187/229 (81.66%), Query Frame = 2
Query:    2 DIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPWCMPCLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQFAENKGGIKTDDFFRTSADDVYAVGDVXTFPMKLYREMRRVEHVDHAPQSAEQAVK 688
            D+ +K L SA G I+ YQ L+IATGSTV++L+DFGV+GADAKNIFYLREIDDAD+LVE                YIGLEL AAL+INN DVSMVYPEPWCMP LFT +IAAFYEGYYA KGI IIKGTVAVGFT + +GEVKEVKLKDGR LEADIVVVGVG RPL SLFKGQ  E KGGIKTD+FF+TS  DVYAVGDV TFP+KLY E+RRVEHVDH+ +SAEQAVK
Sbjct:   99 DLPAKRLRSAHGKIYNYQTLIIATGSTVIKLSDFGVQGADAKNIFYLREIDDADQLVEAIKAKENGKVVVVGGGYIGLELGAALRINNFDVSMVYPEPWCMPRLFTPEIAAFYEGYYAQKGITIIKGTVAVGFTVDTNGEVKEVKLKDGRVLEADIVVVGVGARPLTSLFKGQIVEEKGGIKTDEFFKTSVPDVYAVGDVATFPLKLYNELRRVEHVDHSRKSAEQAVK 327          
BLAST of FC931246 vs. ExPASy Swiss-Prot
Match: MDAR4_ARATH (Probable monodehydroascorbate reductase, cytoplasmic isoform 4 OS=Arabidopsis thaliana GN=At5g03630 PE=1 SV=1)

HSP 1 Score: 335.109 bits (858), Expect = 2.136e-91
Identity = 166/229 (72.49%), Postives = 188/229 (82.10%), Query Frame = 2
Query:    2 DIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPWCMPCLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQFAENKGGIKTDDFFRTSADDVYAVGDVXTFPMKLYREMRRVEHVDHAPQSAEQAVK 688
            D+A+KTL+S TG +FKYQ L+ ATGS+V+RL+DFGV GADAKNIFYLRE++DAD L                  YIGLEL AALK NN+DV+MVYPEPWCMP LFTA IA+FYEGYYANKGI I+KGTVA GFTTN++GEV EVKLKDGRTLEADIV+VGVGGRP+ISLFK Q  E KGG+KTD FF+TS  DVYA+GDV TFPMKLY EMRRVEHVDHA +SAEQAVK
Sbjct:  100 DLAAKTLVSGTGQVFKYQTLLAATGSSVIRLSDFGVPGADAKNIFYLRELEDADYLAYAMETKEKGKAVVVGGGYIGLELGAALKANNLDVTMVYPEPWCMPRLFTAGIASFYEGYYANKGINIVKGTVASGFTTNSNGEVTEVKLKDGRTLEADIVIVGVGGRPIISLFKDQVEEEKGGLKTDGFFKTSLPDVYAIGDVATFPMKLYNEMRRVEHVDHARKSAEQAVK 328          
BLAST of FC931246 vs. ExPASy Swiss-Prot
Match: MDAR_SOLLC (Monodehydroascorbate reductase OS=Solanum lycopersicum GN=AFRR PE=1 SV=1)

HSP 1 Score: 333.569 bits (854), Expect = 6.214e-91
Identity = 167/229 (72.93%), Postives = 189/229 (82.53%), Query Frame = 2
Query:    2 DIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPWCMPCLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQFAENKGGIKTDDFFRTSADDVYAVGDVXTFPMKLYREMRRVEHVDHAPQSAEQAVK 688
            D+ASKTL+SA G  FKYQ LVIATG+TVL+L+DFGV+GAD+KNIFYLREIDDAD+LVE                YIGLELSA L++NNI+V+MVYPEPWCMP LFT  IAAFYEGYY NKG+ IIKGTVAVGF T+ +GEVKEVKLKDGR LEADIVVVGVG RPL +LFKGQ  E KGGIKTD FF+TS  DVYAVGDV TFP+K+Y E+RRVEHVDH+ +SAEQAVK
Sbjct:   99 DLASKTLVSAAGESFKYQTLVIATGTTVLKLSDFGVQGADSKNIFYLREIDDADQLVEALKAKKNGKAVVVGGGYIGLELSAVLRLNNIEVNMVYPEPWCMPRLFTEGIAAFYEGYYKNKGVNIIKGTVAVGFDTHPNGEVKEVKLKDGRVLEADIVVVGVGARPLTTLFKGQVEEEKGGIKTDAFFKTSVPDVYAVGDVATFPLKMYNEIRRVEHVDHSRKSAEQAVK 327          
BLAST of FC931246 vs. ExPASy Swiss-Prot
Match: MDAR_PEA (Monodehydroascorbate reductase OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 333.183 bits (853), Expect = 8.115e-91
Identity = 168/229 (73.36%), Postives = 186/229 (81.22%), Query Frame = 2
Query:    2 DIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPWCMPCLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQFAENKGGIKTDDFFRTSADDVYAVGDVXTFPMKLYREMRRVEHVDHAPQSAEQAVK 688
            D+A+K L SA G  F YQ LVIATGS V+RLTDFGV GA+AKNIFYLRE+DDADKL E                YIGLELSA LK+N++DV+MVYPEPWCMP LFT++IAAFYEGYYANKGI IIKGTVAVGFT N+DGEVKEVKLKDGR LEADIV+VGVGGRP ISLFKGQ  E  GGIKTD FF+TS  DVYAVGDV TFP+KLY ++RRVEHVDHA +SAEQA K
Sbjct:   98 DLAAKFLKSANGEHFDYQTLVIATGSAVIRLTDFGVIGANAKNIFYLREVDDADKLYEAIKRKKNAKRVVVGGGYIGLELSAVLKLNDLDVTMVYPEPWCMPRLFTSEIAAFYEGYYANKGINIIKGTVAVGFTANSDGEVKEVKLKDGRVLEADIVIVGVGGRPQISLFKGQVEEQHGGIKTDSFFKTSVPDVYAVGDVATFPLKLYNDVRRVEHVDHARKSAEQAAK 326          
BLAST of FC931246 vs. ExPASy Swiss-Prot
Match: MDAR1_ARATH (Probable monodehydroascorbate reductase, cytoplasmic isoform 1 OS=Arabidopsis thaliana GN=At3g09940 PE=2 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.138e-76
Identity = 146/230 (63.48%), Postives = 178/230 (77.39%), Query Frame = 2
Query:    2 DIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKL-VEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPWCMPCLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQFAENKGGIKTDDFFRTSADDVYAVGDVXTFPMKLYREMRRVEHVDHAPQSAEQAVK 688
            D+ASKTL+S  G I+KYQ L+IATGST +RL++ GV+ AD KNIFYLREI+D+D+L +                 ++GLE+S+AL+ NN +V+MV+PEPW +   FTA+IA+FYE YYANKGIKIIKGTVA GF+TN+DGEV EVKL+DGRTLEA+IVV GVG RP  SLFKGQ  E KGGIKTD FF+TS  DVYA+GDV TFPMK+Y   RRVEH D+A +SA QAVK
Sbjct:  100 DLASKTLVSDDGKIYKYQTLLIATGSTNIRLSEIGVQEADVKNIFYLREIEDSDELALAMELYVQRGKAVIIGGGFLGLEISSALRANNHEVTMVFPEPWLVHRFFTAEIASFYESYYANKGIKIIKGTVATGFSTNSDGEVTEVKLEDGRTLEANIVVAGVGARPATSLFKGQLEEEKGGIKTDGFFKTSVPDVYALGDVATFPMKMYGGTRRVEHADNARKSAAQAVK 329          
BLAST of FC931246 vs. ExPASy Swiss-Prot
Match: MDAR2_ARATH (Probable monodehydroascorbate reductase, cytoplasmic isoform 2 OS=Arabidopsis thaliana GN=At3g27820 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.635e-57
Identity = 115/228 (50.44%), Postives = 152/228 (66.67%), Query Frame = 2
Query:    2 DIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPWCMPCLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQFAENKGGIKTDDFFRTSADDVYAVGDVXTFPMKLYREMRRVEHVDHAPQSAEQAV 685
            D+  KTLLS+TG    Y+ L+IATG+  L+L +FGVEG+DA+N+ YLR++ DA++L                  YIG+E +A+L IN I+V+MV+PE  CM  LFT  IA+ YE YY  KG+K IKGTV   F  +++ +V  V LKDG  L AD+VVVG+G RP  SLF+GQ    KGGIK +   ++S   VYA+GDV TFP+KL+ EMRR+EHVD A +SA  AV
Sbjct:   98 DVRRKTLLSSTGETISYKFLIIATGARALKLEEFGVEGSDAENVCYLRDLADANRLATVIQSSSNGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASLYEDYYRAKGVKFIKGTVLTSFEFDSNKKVTAVNLKDGSHLPADLVVVGIGIRPNTSLFEGQLTIEKGGIKVNSRMQSSDSSVYAIGDVATFPVKLFGEMRRLEHVDSARKSARHAV 325          
BLAST of FC931246 vs. ExPASy Swiss-Prot
Match: MDARP_ARATH (Monodehydroascorbate reductase, chloroplastic OS=Arabidopsis thaliana GN=At1g63940 PE=2 SV=3)

HSP 1 Score: 166.392 bits (420), Expect = 1.314e-40
Identity = 95/232 (40.95%), Postives = 128/232 (55.17%), Query Frame = 2
Query:    2 DIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPWCMPCLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQFAENK--GGIKTDDFFRTSADDVYAVGDVXTFPMKLYREMRRVEHVDHAPQSAEQAVKT 691
            D   +TL +  G   KY  L+IATG T  R  D    G     + Y+RE+ DAD L+                 YIG+E++AA    N+D ++V+PE   +  LFT  +A  YE  Y   G+K +KG         +DG V  VKL DG T+EAD VV+G+G +P I  F+   A NK  GGI+ D  FRTS   ++A+GDV  FP+K+Y  M RVEHVDHA +SA+  VK+
Sbjct:  156 DFEKQTLTTDAGKQLKYGSLIIATGCTASRFPD--KIGGHLPGVHYIREVADADSLIASLGKAKKIVIVGGG--YIGMEVAAAAVAWNLDTTIVFPEDQLLQRLFTPSLAQKYEELYRQNGVKFVKGASINNLEAGSDGRVSAVKLADGSTIEADTVVIGIGAKPAIGPFE-TLAMNKSIGGIQVDGLFRTSTPGIFAIGDVAAFPLKIYDRMTRVEHVDHARRSAQHCVKS 382          
BLAST of FC931246 vs. ExPASy Swiss-Prot
Match: MDARF_CUCSA (Monodehydroascorbate reductase, fruit isozyme (Fragments) OS=Cucumis sativus PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.784e-21
Identity = 55/91 (60.44%), Postives = 64/91 (70.33%), Query Frame = 2
Query:  407 NADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQFAENKGGIKTDDFFRTSADDVYAVGDVXTFPMKLYREMRRVEHVDHAPQSAEQ 679
            +AD  V+ +KLKDGRTL+ADIVVVGVGGRPL+SLFK                 TS  DVYAVGDV T+P+KLY E+RRVEHVDHA  S E+
Sbjct:   23 DADQLVEAIKLKDGRTLDADIVVVGVGGRPLVSLFK-----------------TSIPDVYAVGDVATYPLKLYNELRRVEHVDHARLSIEE 96          
BLAST of FC931246 vs. ExPASy Swiss-Prot
Match: CAMA_PSEPU (Putidaredoxin reductase OS=Pseudomonas putida GN=camA PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.238e-14
Identity = 65/224 (29.02%), Postives = 99/224 (44.20%), Query Frame = 2
Query:   20 LLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPWCMPCLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE-VKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQFAENKGGIKTDDFFRTSADDVYAVGDVXTFPMKLYREMRRVEHVDHAPQSAEQAVK 688
            ++ + G    Y  LV+ATG     L         A N  YLR ++DA+ +                  YIGLE++A     N+ V+++      +  +    ++AFYE  +   G+ I  GT   GF  + D + V  V  +DG  L AD+V+ G+G  P   L      +   GI  ++  +TS   + AVGD   F  +LY    R+E V   P + EQA K
Sbjct:   93 VILSDGRALDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTLEDAECI--RRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVDNGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESV---PNALEQARK 311          
The following BLAST results are available for this feature:
BLAST of FC931246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
MDAR3_ARATH1.635e-9172.49Probable monodehydroascorbate reductase, cytoplasm... [more]
MDARS_CUCSA2.136e-9173.36Monodehydroascorbate reductase, seedling isozyme O... [more]
MDAR4_ARATH2.136e-9172.49Probable monodehydroascorbate reductase, cytoplasm... [more]
MDAR_SOLLC6.214e-9172.93Monodehydroascorbate reductase OS=Solanum lycopers... [more]
MDAR_PEA8.115e-9173.36Monodehydroascorbate reductase OS=Pisum sativum PE... [more]
MDAR1_ARATH1.138e-7663.48Probable monodehydroascorbate reductase, cytoplasm... [more]
MDAR2_ARATH2.635e-5750.44Probable monodehydroascorbate reductase, cytoplasm... [more]
MDARP_ARATH1.314e-4040.95Monodehydroascorbate reductase, chloroplastic OS=A... [more]
MDARF_CUCSA1.784e-2160.44Monodehydroascorbate reductase, fruit isozyme (Fra... [more]
CAMA_PSEPU1.238e-1429.02Putidaredoxin reductase OS=Pseudomonas putida GN=c... [more]

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Properties
Property NameValue
Genbank descriptionC34103B01EF PostHarvP1 Citrus clementina cDNA clone C34103B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931246 ID=FC931246; Name=FC931246; organism=Citrus clementina; type=EST; length=694bp
AGATATTGCTTCCAAGACTCTCCTTAGTGCAACTGGGCTTATCTTTAAGT
ACCAGATTTTAGTAATTGCAACTGGTTCTACAGTTTTACGGTTGACTGAT
TTTGGTGTTGAAGGTGCTGATGCCAAAAATATCTTCTACTTAAGAGAAAT
TGATGATGCTGATAAGCTGGTTGAAGCAATAAAAGCAAAGAAGAATGGGA
AGGCGGTGGTTGTTGGAGGAGGATACATTGGTCTTGAGCTTAGTGCAGCT
TTAAAAATAAATAATATTGATGTTAGCATGGTTTATCCTGAACCATGGTG
CATGCCTTGTCTTTTCACTGCGGATATTGCTGCTTTCTATGAGGGTTATT
ATGCCAATAAAGGAATCAAAATTATTAAGGGAACAGTTGCTGTTGGATTT
ACCACAAATGCCGATGGAGAGGTCAAAGAAGTGAAGCTGAAGGACGGCAG
GACTCTGGAAGCTGACATTGTTGTTGTTGGTGTAGGAGGAAGACCTCTTA
TATCATTATTTAAAGGGCAGTTTGCAGAGAATAAAGGAGGCATAAAGACT
GATGATTTTTTCAGGACAAGTGCTGATGATGTGTACGCTGTGGGGGATGT
GGNCACTTTCCCTATGAAATTGTACCGGGAAATGAGAAGAGTTGAGCATG
TTGACCATGCCCCGCAATCAGCTGAGCAGGCTGTGAAGACATCA
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