FC931256

Overview
NameFC931256
Unique NameFC931256
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931256_ssr555 microsatellite FC931256_ssr555:555..566. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15296 contig Ccv1_Contig15296:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC931256 vs. ExPASy Swiss-Prot
Match: CS029_MOUSE (Uncharacterized protein C19orf29 homolog OS=Mus musculus PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.894e-12
Identity = 45/156 (28.85%), Postives = 89/156 (57.05%), Query Frame = 1 
Query:   25 HVEYWEALMVVCDWELAEARKKDALDRARVRGEQPPAELLAEERGLHSSIEADVRNLLDGKTHKELEALQTKIELQMRAGTAKV-VEYWEAILKRLHIYKAKACLKEIHAKMLRKHLQRLEQPSEVAKFETDLDSMPEAEVIEHDDNDAGNFSPEP 489
            +V++W  +  + + E+A+ RK +A  +        P E      G+++S+ +DV+++  GKT+ +L+ +   IE ++RAG   + + YWE++L++L  + A+A L+E H  +LR+ L +L+Q       E  ++S P   +++ + + A   SPEP
Sbjct:  381 NVDFWRDMTTITEDEIAKLRKLEASGKG-------PGE---RREGVNASVSSDVQSVFKGKTYNQLQVIFQGIEGKIRAGGPNLDMGYWESLLQQLRAHMARARLRERHQDVLRQKLFKLKQ-------EQGVESEPLFPILKSEPSAA--HSPEP 517
The following BLAST results are available for this feature:
BLAST of FC931256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CS029_MOUSE9.894e-1228.85Uncharacterized protein C19orf29 homolog OS=Mus mu... [more]
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Properties
Property NameValue
Genbank descriptionC34103B11EF PostHarvP1 Citrus clementina cDNA clone C34103B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931256 ID=FC931256; Name=FC931256; organism=Citrus clementina; type=EST; length=698bp
GATTTGGACAGGGCAACACCAACTCATGTAGAGTATTGGGAGGCGCTTAT
GGTGGTTTGTGATTGGGAATTAGCTGAAGCGCGGAAGAAGGATGCACTAG
ATCGAGCTCGAGTCCGTGGGGAACAACCTCCTGCGGAGTTGCTTGCAGAA
GAGAGGGGGTTGCATTCTAGCATTGAAGCAGATGTCAGGAATCTTTTGGA
CGGAAAGACTCACAAGGAACTTGAGGCATTACAAACCAAGATAGAGTTGC
AGATGCGTGCCGGCACAGCCAAGGTGGTTGAGTACTGGGAAGCCATTCTT
AAACGGCTTCATATATATAAGGCAAAGGCTTGTTTGAAGGAAATACATGC
TAAAATGCTGCGTAAGCATCTGCAACGCCTCGAGCAACCTTCGGAGGTTG
CAAAATTCGAAACCGATCTTGATTCAATGCCTGAAGCAGAGGTTATTGAG
CATGATGACAATGATGCTGGAAATTTCTCTCCAGAACCTGTATTGGAGGA
CACTCAAGAGGCAGAGAAAGAGGCTGGATCATTTTCACCAGAATTATTAC
ATGGTGATGATGATGAAGAAGCTATTGACCCTGATGAGGATAGGGCTTTA
CTGGAGCGTAAACGAATTGCAGTTTTGGAAGACCAGCAAAGACGAATTNC
AGAAGCTATGGCATCAAAGCCAACTCCGTCAGATGATAACTTTGAACT
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