FC931265

Overview
NameFC931265
Unique NameFC931265
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14094 contig Ccv1_Contig14094:1..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931265 vs. ExPASy Swiss-Prot
Match: 2NPD_NEUCR (2-nitropropane dioxygenase OS=Neurospora crassa GN=ncd-2 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.158e-21
Identity = 65/190 (34.21%), Postives = 104/190 (54.74%), Query Frame = 2
Query:  200 RKTRSLTERPF----GVGVVLAFPHNENIKAILSEKVAVL-----QVSW---------------GEYSEELVLEA-HSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQ-DGLISLLPMVVDLIG----DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLV 679
            R    LT+RP     G+GV L   H  ++  +    + +L     Q  W                + + + ++EA H++G  V  QVG+  +ARKA   G D I+ QG +AGGH +    G++SL+P V D++     +R++ ++AAGG+ D RG V AL LGA+G+ LGTRF  + E+ + PE++RK++
Sbjct:   83 RSRLGLTDRPLTPLPGIGVGLILTHTISVPYVTDTVLPILIEHSPQAVWLFANDPDFEASSEPGAKGTAKQIIEALHASGFVVFFQVGTVKDARKAAADGADVIVAQGIDAGGHQLATGSGIVSLVPEVRDMLDREFKEREVVVVAAGGVADGRGVVGALGLGAEGVVLGTRFTVAVEA-STPEFRRKVI 271          
BLAST of FC931265 vs. ExPASy Swiss-Prot
Match: 2NPD_BACSU (Probable 2-nitropropane dioxygenase OS=Bacillus subtilis GN=yrpB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.957e-20
Identity = 73/254 (28.74%), Postives = 117/254 (46.06%), Query Frame = 2
Query:   71 IVQAPLGPDISGPEXXXXXXXXXXXXXXRAPDWEAPDYLRDLIRKTRSLTERPFGVGVV----LAFPHNENIK------------------------------AILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH------VIGQD--GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKLNIQM 706
            I+QAP+   I+ P                A  +  PD L   I++   LT+ PF + V     L  P  + IK                               IL  KV     ++    E+ V E  +AG  ++    + +EA      G+D +++QG EAGGH        G+   GL++L+P   D +    +P+IAAGG++D RG  AAL+LGAQG+ +G+ F+   ES AHP +K+K++E ++ + ++
Sbjct:   14 IIQAPMAGGITKPRLASAVSNQGALGSL-ASGYLTPDLLEQQIKEIFELTDAPFQINVFVPLGLEMPPKDQIKKWKENIPLANQVNQFTSVQEEWDDFYQKIDLILKYKVKACSFTFDLPPEDAVKELKTAGCCLIGTASTVEEALLMEERGMDIVVLQGSEAGGHRGAFLPSKGESAVGLMALIPQAADAL---SVPVIAAGGMIDHRGVKAALTLGAQGVQIGSAFLICHESNAHPVHKQKILEANEADTKL 263          
BLAST of FC931265 vs. ExPASy Swiss-Prot
Match: 2NPD_STAAT (Probable 2-nitropropane dioxygenase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=USA300HOU_0879 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.780e-20
Identity = 55/137 (40.15%), Postives = 85/137 (62.04%), Query Frame = 2
Query:  269 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH---------VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYA 652
            +I  I+ ++V V   ++G  SE+++    +A VK++    S DEA     AG+DAI+ QG EAGGH          +   G ISL+P +VD++    IP+IAAGGI+D RG +A++ LGA+G+ +GT F+ S++S A
Sbjct:  117 HIDTIIKKQVPVCCFTFGIPSEQIISRLKAANVKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFLKPKNQLPMVGTISLVPQIVDVVS---IPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLTSQDSNA 250          
BLAST of FC931265 vs. ExPASy Swiss-Prot
Match: 2NPD_STAAE (Probable 2-nitropropane dioxygenase OS=Staphylococcus aureus (strain Newman) GN=NWMN_0792 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.780e-20
Identity = 55/137 (40.15%), Postives = 85/137 (62.04%), Query Frame = 2
Query:  269 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH---------VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYA 652
            +I  I+ ++V V   ++G  SE+++    +A VK++    S DEA     AG+DAI+ QG EAGGH          +   G ISL+P +VD++    IP+IAAGGI+D RG +A++ LGA+G+ +GT F+ S++S A
Sbjct:  117 HIDTIIKKQVPVCCFTFGIPSEQIISRLKAANVKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFLKPKNQLPMVGTISLVPQIVDVVS---IPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLTSQDSNA 250          
BLAST of FC931265 vs. ExPASy Swiss-Prot
Match: 2NPD_STAAC (Probable 2-nitropropane dioxygenase OS=Staphylococcus aureus (strain COL) GN=SACOL0922 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.780e-20
Identity = 55/137 (40.15%), Postives = 85/137 (62.04%), Query Frame = 2
Query:  269 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH---------VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYA 652
            +I  I+ ++V V   ++G  SE+++    +A VK++    S DEA     AG+DAI+ QG EAGGH          +   G ISL+P +VD++    IP+IAAGGI+D RG +A++ LGA+G+ +GT F+ S++S A
Sbjct:  117 HIDTIIKKQVPVCCFTFGIPSEQIISRLKAANVKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFLKPKNQLPMVGTISLVPQIVDVVS---IPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLTSQDSNA 250          
BLAST of FC931265 vs. ExPASy Swiss-Prot
Match: 2NPD_STAA8 (Probable 2-nitropropane dioxygenase OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_00855 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.780e-20
Identity = 55/137 (40.15%), Postives = 85/137 (62.04%), Query Frame = 2
Query:  269 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH---------VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYA 652
            +I  I+ ++V V   ++G  SE+++    +A VK++    S DEA     AG+DAI+ QG EAGGH          +   G ISL+P +VD++    IP+IAAGGI+D RG +A++ LGA+G+ +GT F+ S++S A
Sbjct:  117 HIDTIIKKQVPVCCFTFGIPSEQIISRLKAANVKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFLKPKNQLPMVGTISLVPQIVDVVS---IPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLTSQDSNA 250          
BLAST of FC931265 vs. ExPASy Swiss-Prot
Match: 2NPD_STAA3 (Probable 2-nitropropane dioxygenase OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_0825 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.780e-20
Identity = 55/137 (40.15%), Postives = 85/137 (62.04%), Query Frame = 2
Query:  269 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH---------VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYA 652
            +I  I+ ++V V   ++G  SE+++    +A VK++    S DEA     AG+DAI+ QG EAGGH          +   G ISL+P +VD++    IP+IAAGGI+D RG +A++ LGA+G+ +GT F+ S++S A
Sbjct:  117 HIDTIIKKQVPVCCFTFGIPSEQIISRLKAANVKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFLKPKNQLPMVGTISLVPQIVDVVS---IPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLTSQDSNA 250          
BLAST of FC931265 vs. ExPASy Swiss-Prot
Match: 2NPD_STAAS (Probable 2-nitropropane dioxygenase OS=Staphylococcus aureus (strain MSSA476) GN=SAS0791 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.264e-19
Identity = 54/137 (39.42%), Postives = 83/137 (60.58%), Query Frame = 2
Query:  269 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH---------VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYA 652
            +I  I+ ++V V   ++G  SE ++     A +K++    S DEA     AG+DAI+ QG EAGGH          +   G ISL+P +VD++    IP+IAAGGI+D RG +A++ LGA+G+ +GT F+ S++S A
Sbjct:  117 HIDTIIKKQVPVCCFTFGIPSESIIKRLKEANIKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFLKPKNQLPMVGTISLVPQIVDVVS---IPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLTSQDSNA 250          
BLAST of FC931265 vs. ExPASy Swiss-Prot
Match: 2NPD_STAAR (Probable 2-nitropropane dioxygenase OS=Staphylococcus aureus (strain MRSA252) GN=SAR0883 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.043e-19
Identity = 53/137 (38.69%), Postives = 83/137 (60.58%), Query Frame = 2
Query:  269 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH---------VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYA 652
            +I  I+ ++V V   ++G  +E ++     A +K++    S DEA     AG+DAI+ QG EAGGH          +   G ISL+P +VD++    IP+IAAGGI+D RG +A++ LGA+G+ +GT F+ S++S A
Sbjct:  117 HIDTIIKKQVPVCCFTFGIPNESIIKRLKEANIKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFLKPKNQLPMVGTISLVPQIVDVVS---IPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLTSQDSNA 250          
BLAST of FC931265 vs. ExPASy Swiss-Prot
Match: 2NPD_STAAN (Probable 2-nitropropane dioxygenase OS=Staphylococcus aureus (strain N315) GN=SA0781 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.586e-19
Identity = 53/137 (38.69%), Postives = 83/137 (60.58%), Query Frame = 2
Query:  269 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH---------VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYA 652
            +I  I+ ++V V   ++G  +E ++     A +K++    S DEA     AG+DAI+ QG EAGGH          +   G ISL+P +VD++    IP+IAAGGI+D RG +A++ LGA+G+ +GT F+ S++S A
Sbjct:  117 HIDTIIKKQVPVCCFTFGIPNESIIERLKEANIKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFLKPKNQLPMVGTISLVPQIVDVVS---IPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLTSQDSNA 250          
The following BLAST results are available for this feature:
BLAST of FC931265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
2NPD_NEUCR3.158e-2134.212-nitropropane dioxygenase OS=Neurospora crassa GN... [more]
2NPD_BACSU5.957e-2028.74Probable 2-nitropropane dioxygenase OS=Bacillus su... [more]
2NPD_STAAT7.780e-2040.15Probable 2-nitropropane dioxygenase OS=Staphylococ... [more]
2NPD_STAAE7.780e-2040.15Probable 2-nitropropane dioxygenase OS=Staphylococ... [more]
2NPD_STAAC7.780e-2040.15Probable 2-nitropropane dioxygenase OS=Staphylococ... [more]
2NPD_STAA87.780e-2040.15Probable 2-nitropropane dioxygenase OS=Staphylococ... [more]
2NPD_STAA37.780e-2040.15Probable 2-nitropropane dioxygenase OS=Staphylococ... [more]
2NPD_STAAS2.264e-1939.42Probable 2-nitropropane dioxygenase OS=Staphylococ... [more]
2NPD_STAAR5.043e-1938.69Probable 2-nitropropane dioxygenase OS=Staphylococ... [more]
2NPD_STAAN6.586e-1938.69Probable 2-nitropropane dioxygenase OS=Staphylococ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34103C08EF PostHarvP1 Citrus clementina cDNA clone C34103C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931265 ID=FC931265; Name=FC931265; organism=Citrus clementina; type=EST; length=714bp
GACAGTTCATTTGTATACTTTGAAGTTTACTCTAATGGGTTGGAGAGGAA
TGCTGGGTTTCGAGTATGGGATTGTTCAGGCACCATTGGGACCTGATATT
TCAGGCCCGGAGCTTGTAGCTGCTGTTGCTAATGCCGGTGGTCTTGGTCT
TCTTAGAGCCCCCGATTGGGAAGCACCAGATTACTTGAGGGATCTGATAA
GGAAGACAAGATCATTAACAGAGCGACCATTTGGGGTTGGTGTGGTTCTA
GCATTTCCCCACAACGAAAATATAAAGGCTATACTTAGTGAAAAAGTAGC
AGTTTTGCAAGTTTCCTGGGGTGAATATTCAGAGGAGCTCGTTCTTGAAG
CTCATAGTGCTGGAGTCAAAGTTGTCCCCCAAGTTGGGAGTTTTGACGAA
GCAAGAAAAGCAGTTAACGCAGGTGTAGATGCAATTATAGTCCAAGGACG
TGAAGCGGGGGGCCATGTAATTGGACAGGATGGTTTGATTTCCTTATTGC
CAATGGTGGTTGATCTTATCGGGGATCGAGATATTCCAATAATTGCTGCA
GGTGGTATTGTGGATGCACGTGGTTATGTTGCAGCCCTGTCTCTTGGTGC
TCAAGGCATCTGCTTAGGCACAAGGTTTGTGGCAAGTGAGGAAAGCTATG
CGCATCCTGAGTACAAGAGAAAGTTGGTTGAAATGGACAAACTGAATATA
CAGATGTATTTGGC
back to top