FC931270

Overview
NameFC931270
Unique NameFC931270
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931270_ssr271 microsatellite FC931270_ssr271:271..282. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15298 contig Ccv1_Contig15298:1..691. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC931270 vs. ExPASy Swiss-Prot
Match: HAP28_RAT (28 kDa heat- and acid-stable phosphoprotein OS=Rattus norvegicus GN=Pdap1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 39/75 (52.00%), Postives = 46/75 (61.33%), Query Frame = 1 
Query:  319 QKRKGTQGXXXXXXXXXXXXXXVKAKDVDMGKTTELSRREREEIEKQKAHERYMRLQEQGKTEQARKDLERLALI 543
            QKRKG +G               K   +D+    ELSRREREEIEKQKA ERYM++   GKTEQA+ DL RLA+I
Sbjct:   72 QKRKGVEGLIDIENPNRVAQTTKKVTQLDLDGPKELSRREREEIEKQKAKERYMKMHLAGKTEQAKADLARLAII 146
[Close]
BLAST of FC931270 vs. ExPASy Swiss-Prot
Match: HAP28_MOUSE (28 kDa heat- and acid-stable phosphoprotein OS=Mus musculus GN=Pdap1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 39/75 (52.00%), Postives = 46/75 (61.33%), Query Frame = 1 
Query:  319 QKRKGTQGXXXXXXXXXXXXXXVKAKDVDMGKTTELSRREREEIEKQKAHERYMRLQEQGKTEQARKDLERLALI 543
            QKRKG +G               K   +D+    ELSRREREEIEKQKA ERYM++   GKTEQA+ DL RLA+I
Sbjct:   72 QKRKGVEGLIDIENPNRVAQTTKKVTQLDLDGPKELSRREREEIEKQKAKERYMKMHLAGKTEQAKADLARLAII 146
[Close]
BLAST of FC931270 vs. ExPASy Swiss-Prot
Match: HAP28_HUMAN (28 kDa heat- and acid-stable phosphoprotein OS=Homo sapiens GN=PDAP1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 39/75 (52.00%), Postives = 46/75 (61.33%), Query Frame = 1 
Query:  319 QKRKGTQGXXXXXXXXXXXXXXVKAKDVDMGKTTELSRREREEIEKQKAHERYMRLQEQGKTEQARKDLERLALI 543
            QKRKG +G               K   +D+    ELSRREREEIEKQKA ERYM++   GKTEQA+ DL RLA+I
Sbjct:   72 QKRKGVEGLIDIENPNRVAQTTKKVTQLDLDGPKELSRREREEIEKQKAKERYMKMHLAGKTEQAKADLARLAII 146
The following BLAST results are available for this feature:
BLAST of FC931270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
HAP28_RAT1.960e-1252.0028 kDa heat- and acid-stable phosphoprotein OS=Rat... [more]
HAP28_MOUSE1.960e-1252.0028 kDa heat- and acid-stable phosphoprotein OS=Mus... [more]
HAP28_HUMAN1.960e-1252.0028 kDa heat- and acid-stable phosphoprotein OS=Hom... [more]
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Properties
Property NameValue
Genbank descriptionC34103D01EF PostHarvP1 Citrus clementina cDNA clone C34103D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931270 ID=FC931270; Name=FC931270; organism=Citrus clementina; type=EST; length=690bp
GGAACTGTTGAAACGCAGAGATTCAAAAGCAGCGACCGAAGAGCAGAAGC
TTAAAGCCTTAAACAACAGGAAAAAAAAATCTGTGATAAATTTTCTTCTT
CTTGTTATTATTATTGTTGTTGTTAGTGGTAATCAGCAAAAATGGGAAGA
GGAAAGTTCAAGGGCAAGCCCACCGGTCACCGCCACTTCTCCACTCCCGA
AGAAATGCTTGCTGGTACCTCGAATCGTCGCCCCCGCACTTTTAGACAGG
AAGAAGTTGGACTGAAGGAAGAGGAGGAGGAGGAACAAGAAGAGTCGGGA
GAGGAAGAGGAAGAAAATCAGAAGAGGAAAGGCACCCAGGGAATTATTGA
GATTGAGAATCCTAATATAGAAAAACCTAAGAATGTGAAGGCTAAAGATG
TTGATATGGGGAAAACAACTGAGCTCTCAAGGCGTGAAAGAGAGGAGATT
GAGAAGCAAAAAGCTCACGAGCGATATATGAGGCTTCAAGAACAAGGGAA
AACAGAACAAGCAAGAAAGGATTTAGAGCGCTTGGCCCTGATACGTCAAC
AAAGGGCTGAAGCTGCCAAGAAGCGAGAGGAAGAGAAGGCTGCCAGAGAG
CAGAAAAAAACTGAAGCTCGGAAGTGAAAGAACCCAGAGGATAGTAAGTT
GCATCTAATTTTCTTTATTCAAAGGAAGAACCCNTATCGT
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