FC931273

Overview
NameFC931273
Unique NameFC931273
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931273_ssr235 microsatellite FC931273_ssr235:235..246. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of FC931273 vs. ExPASy Swiss-Prot
Match: YQKD_BACSU (Uncharacterized protein yqkD OS=Bacillus subtilis GN=yqkD PE=4 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 61/210 (29.05%), Postives = 97/210 (46.19%), Query Frame = 1 
Query:   22 PEDTPLPCVVYCHGNSGCRADANEAAVILLPSNITLFTLDFSGSGLSDGDYVSLGWHEKDDLKVVVSYLRGNKQTSR--IGLWGRSMGAVTSLLY-GAEDPSIAGMVLDSAFSDLFDLMLELVDVYKIRLPKFTVKMAVQYMRRVIQKKAKFDIMDLNCLKLAPKTFIPALFGHASEDKFIRARHSDLIFNTYAGDKNI-IKFDGDHNSS 639
            P DTP   ++ CHG +    ++ +   + L     +   D    G S G   S G++EKDDL  VVS L+ NK   R  IG+ G SMGAVT+LLY GA     A   +       FD  L      + RLP + +     +    ++ +  +   +++ L +  K   P LF H+ +D +I    ++ ++    G K + I  +G+H  S
Sbjct:   77 PHDTP-NTIIICHGVTMNVLNSLKYMHLFLDLGWNVLIYDHRRHGQSGGKTTSYGFYEKDDLNKVVSLLK-NKTNHRGLIGIHGESMGAVTALLYAGAHCSDGADFYIADCPFACFDEQLAYRLRAEYRLPSWPLLPIADFF---LKLRGGYRAREVSPLAVIDKIEKPVLFIHSKDDDYIPVSSTERLYEKKRGPKALYIAENGEHAMS 281
The following BLAST results are available for this feature:
BLAST of FC931273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YQKD_BACSU3.996e-1129.05Uncharacterized protein yqkD OS=Bacillus subtilis ... [more]
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Properties
Property NameValue
Genbank descriptionC34103D04EF PostHarvP1 Citrus clementina cDNA clone C34103D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931273 ID=FC931273; Name=FC931273; organism=Citrus clementina; type=EST; length=725bp
CATTATATGCCATCACCTTTCCCGGAAGATACACCTTTGCCTTGTGTCGT
TTACTGCCATGGAAACAGTGGATGTAGGGCAGACGCAAATGAGGCTGCTG
TAATTCTTCTTCCATCGAATATTACTCTTTTCACTCTTGATTTTTCCGGT
TCGGGCTTATCTGATGGTGACTATGTTAGCCTTGGTTGGCATGAGAAAGA
TGACCTCAAAGTTGTGGTATCATACTTAAGAGGCAACAAACAAACATCAC
GTATTGGTCTTTGGGGACGATCTATGGGTGCAGTTACTAGCCTTCTCTAT
GGAGCAGAAGACCCTTCAATTGCTGGTATGGTGTTGGATAGTGCTTTTTC
AGACCTATTTGATCTTATGCTGGAACTTGTGGATGTATACAAAATCCGGC
TCCCTAAATTCACGGTTAAGATGGCAGTGCAGTACATGCGGCGGGTGATT
CAGAAGAAGGCAAAGTTTGATATTATGGATCTTAACTGCTTAAAGTTAGC
ACCCAAAACATTCATTCCTGCTCTATTTGGACATGCTAGTGAGGACAAAT
TCATTCGAGCCCGCCATTCTGACCTGATCTTTAATACCTATGCGGGAGAT
AAAAATATCATAAAGTTCGATGGTGATCACAATTCGTCCCGACCACAATT
TTATTATGATTCTGTTTCCATTTTCTTCTATAATGTTCTTCACCCTCCTC
AAATTCCTTCTACCNATTCATCAAG
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