FC931275

Overview
NameFC931275
Unique NameFC931275
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931275_ssr420 microsatellite FC931275_ssr420:420..431. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15075 contig Ccv1_Contig15075:80..809. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931275 vs. ExPASy Swiss-Prot
Match: VA727_ARATH (Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 3.841e-86
Identity = 161/204 (78.92%), Postives = 176/204 (86.27%), Query Frame = 1
Query:  103 MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRXERIELLVDK-QRTCIQADSFRDKEAVRRR 711
            M+QKGLIYSFV+KGTVVLAEHT YSGNFSTIA+QCLQKLP +SSKYTYSCDGHTFNFL+D+GFVFLVVADES GRSVPFVFLERVK+DFK+RY ASI+N+E HPLA           RFS+AYNLDREFGP LKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDR E+IELLVDK +    QADSF+ +    RR
Sbjct:    1 MSQKGLIYSFVAKGTVVLAEHTPYSGNFSTIAVQCLQKLPTNSSKYTYSCDGHTFNFLVDNGFVFLVVADESTGRSVPFVFLERVKEDFKKRYEASIKNDERHPLADEDEDDDLFGDRFSVAYNLDREFGPILKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGEKIELLVDKTENLQFQADSFQRQGRQLRR 204          
BLAST of FC931275 vs. ExPASy Swiss-Prot
Match: VA725_ARATH (Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2)

HSP 1 Score: 228.409 bits (581), Expect = 3.065e-59
Identity = 114/210 (54.29%), Postives = 150/210 (71.43%), Query Frame = 1
Query:   85 LRNWKEMNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRXERIELLVDK-QRTCIQADSFRDKEAVRRR 711
            LR  + M Q+ LIYSFV++GTV+L E+T + GNF+ +A QCLQKLP+S++K+TY+CDGHTFN+L+++GF + VVA ESVGR +P  FLERVK+DF +RYG                           A +L+REFG +LKEHMQYC+ HP+E+SKL+K+KAQ+TEVKG+MM+NIEKVLDR E+IELLVDK +    QA  FR +    RR
Sbjct:   60 LRVTRTMGQQNLIYSFVARGTVILVEYTEFKGNFTAVAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVESVGRQIPMAFLERVKEDFNKRYGGGKATTAQ-------------------ANSLNREFGSKLKEHMQYCVDHPDEISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKIRR 250          
BLAST of FC931275 vs. ExPASy Swiss-Prot
Match: VA726_ARATH (Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 1.165e-58
Identity = 112/204 (54.90%), Postives = 146/204 (71.57%), Query Frame = 1
Query:  103 MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRXERIELLVDK-QRTCIQADSFRDKEAVRRR 711
            M Q+ LIYSFV++GTV+LAE+T + GNF+++A QCLQKLP+S++K+TY+CDGHTFN+L D+GF + VV  ES GR +P  FLERVK+DF +RYG    +                      A +L++EFG +LKEHMQYC  HPEE+SKLSK+KAQ+TEVKG+MM+NIEKVLDR E+IELLVDK +    QA  FR +    +R
Sbjct:    1 MGQQSLIYSFVARGTVILAEYTEFKGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLADNGFTYCVVVIESAGRQIPMAFLERVKEDFNKRYGGGKASTAK-------------------ANSLNKEFGSKLKEHMQYCADHPEEISKLSKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKMKR 185          
BLAST of FC931275 vs. ExPASy Swiss-Prot
Match: VA722_ARATH (Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 2.868e-57
Identity = 110/204 (53.92%), Postives = 147/204 (72.06%), Query Frame = 1
Query:  103 MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRXERIELLVDK-QRTCIQADSFRDKEAVRRR 711
            M Q+ LIYSFV++GTV+L E T + GNF++IA QCLQKLP+S++K+TY+CDGHTFN+L+++GF + VVA +S GR +P  FLERVK+DF +RYG                         + A +L++EFG +LKEHMQYCM HP+E+SKL+K+KAQ++EVKG+MM+NIEKVLDR E+IELLVDK +    QA  FR +    RR
Sbjct:    1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVDSAGRQIPMAFLERVKEDFNKRYGGG-------------------KAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTQMRR 185          
BLAST of FC931275 vs. ExPASy Swiss-Prot
Match: VA721_ARATH (Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana GN=VAMP721 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.090e-56
Identity = 110/204 (53.92%), Postives = 145/204 (71.08%), Query Frame = 1
Query:  103 MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRXERIELLVDK-QRTCIQADSFRDKEAVRRR 711
            M Q+ LIYSFV++GTV+L E T + GNF++IA QCLQKLP+S++K+TY+CDGHTFN+L++ GF + VVA +S GR +P  FLERVK+DF +RYG                         + A +L++EFG +LKEHMQYCM HP+E+SKL+K+KAQ++EVKG+MM+NIEKVLDR E+IELLVDK +    QA  FR      RR
Sbjct:    1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVEDGFTYCVVAVDSAGRQIPMSFLERVKEDFNKRYGGG-------------------KAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTTGTQMRR 185          
BLAST of FC931275 vs. ExPASy Swiss-Prot
Match: VA724_ARATH (Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 1.023e-46
Identity = 95/205 (46.34%), Postives = 137/205 (66.83%), Query Frame = 1
Query:  103 MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASS-SKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRXERIELLVDK-QRTCIQADSFRDKEAVRRR 711
            M Q+  IYSFV++GT++LAE+T ++GNF +IA QCLQKLP+SS SK+TY+CD HTFNFL++ G+ + VVA +S+ + +   FLERVK DFK+RYG    +                    +IA +L++EFGP +KEHM Y + H EE+ KL K+KAQ++EVK IM++NI+K +DR E + +L DK +    QA  ++ +    RR
Sbjct:    1 MGQESFIYSFVARGTMILAEYTEFTGNFPSIAAQCLQKLPSSSNSKFTYNCDHHTFNFLVEDGYAYCVVAKDSLSKQISIAFLERVKADFKKRYGGGKAST-------------------AIAKSLNKEFGPVMKEHMNYIVDHAEEIEKLIKVKAQVSEVKSIMLENIDKAIDRGENLTVLTDKTENLRSQAQEYKKQGTQVRR 186          
BLAST of FC931275 vs. ExPASy Swiss-Prot
Match: VA723_ARATH (Vesicle-associated membrane protein 723 OS=Arabidopsis thaliana GN=VAMP723 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.628e-46
Identity = 89/181 (49.17%), Postives = 124/181 (68.51%), Query Frame = 1
Query:  103 MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRXERIELL 645
            M Q+ L YSF+++GTV+L E T + GNF+++A Q L+ LP+S++K+TY+CDGHTFN L+++GF + VVA +S GR +P  FLERVK+DF +RYG      +                    A +L++EFG  LKEHMQYCM HP+E+S L+K KAQ++EVK +MM+NIEKVL R    E+L
Sbjct:    1 MAQQSLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVENGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQ-------------------ANSLNKEFGSNLKEHMQYCMDHPDEISNLAKAKAQVSEVKSLMMENIEKVLARGVICEML 162          
BLAST of FC931275 vs. ExPASy Swiss-Prot
Match: VA711_ARATH (Vesicle-associated membrane protein 711 OS=Arabidopsis thaliana GN=VAMP711 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.389e-27
Identity = 69/198 (34.85%), Postives = 116/198 (58.59%), Query Frame = 1
Query:  118 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASS-SKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRXERIELLVDKQRTCIQADSFRDKEAVRR 708
            ++Y+ V++GTVVL+E T+ S N STIA Q L+K+P  + S  +YS D + F+     G   L +A+E+ GR +PF FLE +   F + YG ++                      ++AY ++ EF   L + + Y  + P    +++++K ++ +V+G+M++NI+KVLDR ER+ELLVDK    +Q ++FR ++  RR
Sbjct:    3 ILYALVARGTVVLSEFTATSTNASTIAKQILEKVPGDNDSNVSYSQDRYVFHVKRTDGLTVLCMAEETAGRRIPFAFLEDIHQRFVRTYGRAVHT--------------------ALAYAMNEEFSRVLSQQIDYYSNDPNA-DRINRIKGEMNQVRGVMIENIDKVLDRGERLELLVDKTAN-MQGNTFRFRKQARR 178          
BLAST of FC931275 vs. ExPASy Swiss-Prot
Match: VA713_ARATH (Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana GN=VAMP713 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.276e-27
Identity = 69/199 (34.67%), Postives = 119/199 (59.80%), Query Frame = 1
Query:  118 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPA--SSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRXERIELLVDKQRTCIQADSFRDKEAVRR 708
            +I++ V++GTVVL+E ++ S N S+I+ Q L+KLP   S S  +YS D + F+     G   L +ADE+ GR++PF FL+ +   F + YG +I + +                    AY+++ EF   L + M++  + P    ++S++K ++++V+ +M++NI+KVLDR ER+ELLVDK    +Q ++FR ++  RR
Sbjct:    3 IIFALVARGTVVLSEFSATSTNASSISKQILEKLPGNDSDSHMSYSQDRYIFHVKRTDGLTVLCMADETAGRNIPFAFLDDIHQRFVKTYGRAIHSAQ--------------------AYSMNDEFSRVLSQQMEFYSNDPNA-DRMSRIKGEMSQVRNVMIENIDKVLDRGERLELLVDKTEN-MQGNTFRFRKQARR 179          
BLAST of FC931275 vs. ExPASy Swiss-Prot
Match: VA712_ARATH (Vesicle-associated membrane protein 712 OS=Arabidopsis thaliana GN=VAMP712 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.619e-26
Identity = 68/198 (34.34%), Postives = 113/198 (57.07%), Query Frame = 1
Query:  118 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKY-TYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRXERIELLVDKQRTCIQADSFRDKEAVRR 708
            ++Y+ V++GTVVLAE ++ S N STIA Q L+K+P +   + +YS D + F+     G   L +ADE  GR +PF FLE +   F + YG +I + +                    AY ++ EF   L + ++Y  + P     +S++K ++ +V+ +M++NI+ +LDR ER+ELLVDK    +Q ++FR ++  RR
Sbjct:    3 ILYALVARGTVVLAELSTTSTNASTIAKQILEKIPGNGDSHVSYSQDRYVFHVKRTDGLTVLCMADEDAGRRIPFSFLEDIHQRFVRTYGRAIHSAQ--------------------AYAMNDEFSRVLNQQIEYYSNDP-NADTISRIKGEMNQVRDVMIENIDNILDRGERLELLVDKTAN-MQGNTFRFRKQTRR 178          
The following BLAST results are available for this feature:
BLAST of FC931275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
VA727_ARATH3.841e-8678.92Vesicle-associated membrane protein 727 OS=Arabido... [more]
VA725_ARATH3.065e-5954.29Vesicle-associated membrane protein 725 OS=Arabido... [more]
VA726_ARATH1.165e-5854.90Putative vesicle-associated membrane protein 726 O... [more]
VA722_ARATH2.868e-5753.92Vesicle-associated membrane protein 722 OS=Arabido... [more]
VA721_ARATH1.090e-5653.92Vesicle-associated membrane protein 721 OS=Arabido... [more]
VA724_ARATH1.023e-4646.34Vesicle-associated membrane protein 724 OS=Arabido... [more]
VA723_ARATH6.628e-4649.17Vesicle-associated membrane protein 723 OS=Arabido... [more]
VA711_ARATH1.389e-2734.85Vesicle-associated membrane protein 711 OS=Arabido... [more]
VA713_ARATH5.276e-2734.67Vesicle-associated membrane protein 713 OS=Arabido... [more]
VA712_ARATH7.619e-2634.34Vesicle-associated membrane protein 712 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionC34103D06EF PostHarvP1 Citrus clementina cDNA clone C34103D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931275 ID=FC931275; Name=FC931275; organism=Citrus clementina; type=EST; length=730bp
ACTCTAAGCAACAATCAACCGTCTCCAGATTCTCTCTCTTTGTTCCTCGA
TTCGAAATTCATCCGGCGGCTTTCTTTTCCGGAATTGAGAAATTGGAAAG
AAATGAATCAGAAAGGGTTGATTTACAGCTTTGTTTCGAAAGGCACTGTC
GTTTTAGCCGAGCACACGTCGTATTCCGGAAATTTCAGTACCATTGCCAT
TCAATGTTTACAGAAATTGCCTGCGAGTAGTAGCAAGTACACGTATTCAT
GCGATGGCCACACTTTTAACTTCCTCCTCGACTCTGGATTCGTATTTCTG
GTTGTTGCTGATGAATCGGTTGGGAGAAGTGTGCCGTTTGTTTTTCTCGA
ACGAGTCAAGGATGATTTTAAACAGCGGTATGGGGCGAGTATTCAGAATG
AGGAATCACACCCCCTTGCTGATGATGATGAGGATGATGATTTGTTTGAA
GATCGATTTAGCATTGCCTATAATCTTGACAGAGAATTTGGGCCAAGGCT
TAAGGAGCACATGCAGTATTGTATGAGCCACCCTGAGGAGATGAGCAAGC
TTTCCAAATTAAAGGCTCAAATAACTGAGGTCAAGGGGATTATGATGGAC
AATATTGAGAAGGTTTTGGATCGTGNGGAGAGGATTGAGCTACTGGTGGA
TAAACAGAGAACCTGCATTCAGGCTGACAGCTTCAGAGACAAGGAGGCAG
TTCGGCGAAGATGTGCTGCAGATCTGCAAT
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