FC931280

Overview
NameFC931280
Unique NameFC931280
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931280 vs. ExPASy Swiss-Prot
Match: COG5_HUMAN (Conserved oligomeric Golgi complex subunit 5 OS=Homo sapiens GN=COG5 PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 9.188e-35
Identity = 90/239 (37.66%), Postives = 131/239 (54.81%), Query Frame = 3
Query:    3 SVTSLFQAMIDRLESCILQIHDQNFS-VLGMDATMDNNASPYMEELQKCILHFRSEFLSRLLPSSASXXXXXXXXXXXRLVRSMASRVLIFFIRHASFVRPLSESGKLRMARDMAELELAVGQNLFPVEQLGAPYRALRAFRPLIFLETSQLGASPLLQD-LPPSVILHHLYSRGPDELQSPLQRNKLTPLQYSLWLDSQ-GEDQIWKGIKATLDDYAAKVRARGDKEFSPVYPLMLQL 710
            +V  L  ++ D +E+ I+ +H ++FS  L      D   S YM+ELQ  I    S++                         ++A R +  FIRHAS +RPL E GK+R+A D A++ELAVG     V  LG  YR LR+FRPL+F  +  + +SP L D +P S+I+  L++R P EL+SP QR + +  ++S WLD    E      I+  L+ Y   VR+R  KEF+PVYP+M+QL
Sbjct:  602 AVQPLLTSVGDAIEAIIITMHQEDFSGSLSSSGKPDVPCSLYMKELQGFIARVMSDYFKHF----------ECLDFVFDNTEAIAQRAVELFIRHASLIRPLGEGGKMRLAADFAQMELAVGPFCRRVSDLGKSYRMLRSFRPLLFQASEHVASSPALGDVIPFSIIIQFLFTRAPAELKSPFQRAEWSHTRFSQWLDDHPSEKDRLLLIRGALEAYVQSVRSREGKEFAPVYPIMVQL 830          
BLAST of FC931280 vs. ExPASy Swiss-Prot
Match: COG5_MOUSE (Conserved oligomeric Golgi complex subunit 5 OS=Mus musculus GN=Cog5 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 5.042e-33
Identity = 85/239 (35.56%), Postives = 129/239 (53.97%), Query Frame = 3
Query:    3 SVTSLFQAMIDRLESCILQIHDQNFS-VLGMDATMDNNASPYMEELQKCILHFRSEFLSRLLPSSASXXXXXXXXXXXRLVRSMASRVLIFFIRHASFVRPLSESGKLRMARDMAELELAVGQNLFPVEQLGAPYRALRAFRPLIFLETSQLGASPLLQDLPP-SVILHHLYSRGPDELQSPLQRNKLTPLQYSLWLDSQ-GEDQIWKGIKATLDDYAAKVRARGDKEFSPVYPLMLQL 710
            ++  L  ++ D +E+ I+ +H ++FS         D   S YM+ELQ  I    +++                         ++A R +  FIR+AS +RPL E GKLR+A D A++ELAVG     V  LG  YR LR+FRPL+F  +  +  SP + D+ P S+I+  L++R P EL+SP QR + +  ++S WLD    E      ++  L+ Y   VR+R  KEF+PVYP+M+QL
Sbjct:  592 AIQPLLTSVADAIEAIIITMHQEDFSGASSSSGKPDVPCSLYMKELQGFIARVMNDYFKHF----------ECMDFVFDNTEAIAQRAIELFIRNASLIRPLGEGGKLRLAADFAQMELAVGPLCRRVSDLGKSYRMLRSFRPLLFQTSEHVADSPAVGDIIPFSIIIQFLFTRAPAELKSPFQRAEWSHARFSQWLDDHPSEKDRLLLLRGALEAYVQSVRSRDGKEFAPVYPIMVQL 820          
The following BLAST results are available for this feature:
BLAST of FC931280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
COG5_HUMAN9.188e-3537.66Conserved oligomeric Golgi complex subunit 5 OS=Ho... [more]
COG5_MOUSE5.042e-3335.56Conserved oligomeric Golgi complex subunit 5 OS=Mu... [more]
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Properties
Property NameValue
Genbank descriptionC34103D11EF PostHarvP1 Citrus clementina cDNA clone C34103D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931280 ID=FC931280; Name=FC931280; organism=Citrus clementina; type=EST; length=740bp
ACTCAGTTACATCCTTGTTCCAAGCAATGATTGACCGTCTTGAGTCTTGC
ATCTTGCAAATTCATGACCAGAACTTCAGTGTGCTTGGGATGGATGCTAC
CATGGATAATAATGCTTCGCCATACATGGAGGAGCTGCAGAAGTGTATTC
TTCACTTCCGTAGTGAGTTTCTATCTAGGCTGTTGCCTTCTTCAGCAAGT
ACTACCACTGCAGGGACAGAAACTATATGCACTAGGCTAGTTCGGAGCAT
GGCTTCCCGGGTCCTGATATTTTTCATCAGGCATGCTTCTTTTGTAAGAC
CGTTGTCAGAATCAGGGAAATTGAGGATGGCCAGAGACATGGCTGAGCTA
GAGTTAGCTGTGGGCCAGAACTTGTTCCCGGTTGAACAGCTTGGCGCTCC
CTATCGAGCCCTTCGAGCATTCCGGCCTCTTATTTTCTTGGAAACATCTC
AGTTGGGAGCATCTCCTCTTCTTCAAGATCTCCCACCAAGTGTTATACTT
CACCATCTTTACTCTCGGGGTCCTGATGAATTGCAGTCACCATTGCAGAG
GAATAAGCTGACACCTCTGCAGTATTCGTTATGGCTGGATTCTCAAGGGG
AGGATCAGATATGGAAAGGTATTAAAGCTACTCTGGATGATTATGCTGCA
AAAGTTAGGGCAAGAGGAGACAAAGAGTTCAGCCCTGTATATCCTCTCAT
GCTCCAACTGGGATCAGCTTTGAGTGTAAAGGCTCCTGGA
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