FC931285

Overview
NameFC931285
Unique NameFC931285
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931285_ssr33 microsatellite FC931285_ssr33:33..44. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of FC931285 vs. ExPASy Swiss-Prot
Match: Y1515_ARATH (Uncharacterized TPR repeat-containing protein At1g05150 OS=Arabidopsis thaliana GN=At1g05150 PE=1 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 8.483e-62
Identity = 124/163 (76.07%), Postives = 130/163 (79.75%), Query Frame = 3 
Query:  231 MATRGSRSEKVKRIFQQFDTNRDGGLNREEMAALVVAVNPRVKFSDEQINAILDEVFRTYGEFIDGEKGLTYDGLLRTYXXXXXXXXXXXXXLGLELNLDENKGLXXXXXXXXXXIVDERAIESQKKQRTAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAK 719
            MATRGSRSEKVKRIFQQFD N DGGLNREEMAALVVAVNPRVKFSDEQINAILDEVFRTY EFID  KGLTYDGLLRTY             LGLELN DE   +          I DERA+E+QKKQRTAAWAVSPNHGIVFD+TWK+VDDLEILVKRLK+K
Sbjct:    1 MATRGSRSEKVKRIFQQFDGNHDGGLNREEMAALVVAVNPRVKFSDEQINAILDEVFRTYAEFIDPNKGLTYDGLLRTYDDGAGDVDRDFDALGLELNADETT-IKGSEAASSSSITDERAVEAQKKQRTAAWAVSPNHGIVFDETWKLVDDLEILVKRLKSK 162
[Close]
BLAST of FC931285 vs. ExPASy Swiss-Prot
Match: Y2245_ARATH (Uncharacterized TPR repeat-containing protein At2g32450 OS=Arabidopsis thaliana GN=At2g32450 PE=1 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.497e-58
Identity = 118/163 (72.39%), Postives = 131/163 (80.37%), Query Frame = 3 
Query:  231 MATRGSRSEKVKRIFQQFDTNRDGGLNREEMAALVVAVNPRVKFSDEQINAILDEVFRTYGEFIDGEKGLTYDGLLRTYXXXXXXXXXXXXXLGLELNLDENKGLXXXXXXXXXXIVDERAIESQKKQRTAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAK 719
            M TRGSRSEKVKRIFQQFD N DGGL+REEM+ALVVAVNPRVKFSDEQI+AILDEVFRTY EFIDG+KGLT+DGLLRTY             LG+E N +E KG           I DERA+E+QK+QRTAAWAVSPNHGIVFD+TWK+VDDLEILVKRLK+K
Sbjct:    1 MTTRGSRSEKVKRIFQQFDGNLDGGLSREEMSALVVAVNPRVKFSDEQISAILDEVFRTYAEFIDGDKGLTFDGLLRTYDDGAGDVDRDFDALGIEFN-EETKG---ASEASSSSITDERAVEAQKQQRTAAWAVSPNHGIVFDETWKLVDDLEILVKRLKSK 159
The following BLAST results are available for this feature:
BLAST of FC931285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y1515_ARATH8.483e-6276.07Uncharacterized TPR repeat-containing protein At1g... [more]
Y2245_ARATH1.497e-5872.39Uncharacterized TPR repeat-containing protein At2g... [more]
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Properties
Property NameValue
Genbank descriptionC34103E04EF PostHarvP1 Citrus clementina cDNA clone C34103E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931285 ID=FC931285; Name=FC931285; organism=Citrus clementina; type=EST; length=725bp
GAATTCAGATCCAACAAAACCCAAAATTAAGCCATCATCATCATTATTCT
CACCAACAATTAAACAAACCTCAATTGAAATGAATTAGGGTTTCAAATTT
TAAACTCAAAGTAACCACCCTTTGCCTTTTTATCAACTTTTCCTTATATT
CCCTTATCTACTAATTCCTCTTTCTCAAACAAACACTGAGAAACCAAACT
GACCCCCAGAAAAACAGAAAAAAAAAAAAAATGGCTACGAGAGGAAGCAG
ATCAGAGAAAGTGAAGAGAATTTTTCAACAATTTGACACGAACCGCGACG
GTGGCCTTAATAGAGAAGAAATGGCGGCTTTAGTGGTGGCCGTAAACCCT
AGAGTCAAATTCAGCGACGAACAAATCAACGCAATTCTCGACGAAGTATT
CCGTACTTACGGCGAGTTCATCGACGGTGAGAAGGGTTTAACTTACGACG
GTTTGTTACGGACCTACGATGATGGTGCTGGTGACGTGGACAGAGATTTC
GATGCGTTAGGCCTCGAGCTCAATTTGGACGAAAACAAAGGGCTCTCCAT
GGTTTCTGAAGCTTCTTCGTCATCAATTGTTGACGAGAGGGCAATTGAGT
CACAGAAGAAACAAAGAACGGCCGCTTGGGCGGTTTCGCCCAATCACGGG
ATAGTGTTTGATGACACGTGGAAGATTGTCGATGATTTGGAGATTCTGGT
GAAGAGACTGAAAGCGAAAGCAGCA
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