FC931290

Overview
NameFC931290
Unique NameFC931290
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931290_ssr10 microsatellite FC931290_ssr10:10..21. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15303 contig Ccv1_Contig15303:1..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931290 vs. ExPASy Swiss-Prot
Match: COTA_BACSU (Spore coat protein A OS=Bacillus subtilis GN=cotA PE=1 SV=4)

HSP 1 Score: 156.762 bits (395), Expect = 1.116e-37
Identity = 84/194 (43.30%), Postives = 112/194 (57.73%), Query Frame = 1
Query:  130 LKLEMFVDELPDMPKIKGYYAANGVVKPKKLEIGMFEKKWKFHRDLPPTPVFAFGTSSLTASVPGPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKKG-VPTVVHLHGGIDEPESDGYAKSWFTAGFEEKGPTWTNETYHYHNMQQPGNTWYHDHTMGLTRVNLLAGLIGAYILRHPDVEAPLRLP 708
            + LE FVD LP    +K    +    +    E+ M E   + HRDLPPT ++ +         PGPTIE     + YV W N+LP  H LPID TI  +   +++  V TVVHLHGG+   +SDGY ++WF+  FE+ GP +  E YHY N Q+    WYHDH M LTR+N+ AGL+GAYI+  P  E  L+LP
Sbjct:    1 MTLEKFVDALPIPDTLKPVQQSK---EKTYYEVTMEECTHQLHRDLPPTRLWGYN-----GLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLHGGVTPDDSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNVYAGLVGAYIIHDPK-EKRLKLP 185          
BLAST of FC931290 vs. ExPASy Swiss-Prot
Match: PHSA_STRAT (Phenoxazinone synthase OS=Streptomyces antibioticus GN=phsA PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.916e-13
Identity = 57/185 (30.81%), Postives = 80/185 (43.24%), Query Frame = 1
Query:  214 KKLEIGMFEKKWKFHRDLPPTPVFAFGTSSLTASVPGPTIEALHGIDTYVTWQNHLPPNHILPID----PTIPTAMPS-----NKKGVP-----------TVVHLHGGIDEPESDGYAKSWFTAGFEEKGPTWTNETYHYHNMQQPGNTWYHDHTMGLTRVNLLAGLIGAYILRHPDVEAPLRLP 708
            ++ EI +     + H  LPPT ++ +        VPGPTIE   G    + W N +P     P+     P  P   P+      + GV            +V HLHG      +DG+A +    GF +       +   Y N  Q    WYHDH M +TR N++AGL G Y++R  D E  L LP
Sbjct:   64 RETEIALRPTWVRLHPQLPPTLMWGYD-----GQVPGPTIEVRRGQRVRIAWTNRIPKGSEYPVTSVEVPLGPPGTPAPNTEPGRGGVEPNKDVAALPAWSVTHLHGAQTGGGNDGWADN--AVGFGDA------QLSEYPNDHQATQWWYHDHAMNITRWNVMAGLYGTYLVR-DDEEDALGLP 234          
The following BLAST results are available for this feature:
BLAST of FC931290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
COTA_BACSU1.116e-3743.30Spore coat protein A OS=Bacillus subtilis GN=cotA ... [more]
PHSA_STRAT1.916e-1330.81Phenoxazinone synthase OS=Streptomyces antibioticu... [more]
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Properties
Property NameValue
Genbank descriptionC34103E09EF PostHarvP1 Citrus clementina cDNA clone C34103E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931290 ID=FC931290; Name=FC931290; organism=Citrus clementina; type=EST; length=724bp
GACCAAGAGATTAATTAATTATGCATGGCTCTAATGGAGAGAATTTTAGT
GCTTCATTTGATGTTTTTCGCTTTGTCAAGAGTGGTGGTAAACTCAGCTG
CAACGACAGGAGGAGGGCTAATAAATCCACTGAAATTAGAGATGTTTGTT
GATGAGCTTCCAGATATGCCTAAAATCAAAGGGTATTATGCTGCAAATGG
TGTTGTAAAGCCAAAGAAACTAGAGATTGGTATGTTCGAAAAGAAATGGA
AATTCCACAGAGACCTCCCTCCAACACCAGTGTTTGCCTTCGGTACATCA
AGTCTCACAGCAAGCGTCCCTGGTCCAACCATCGAGGCCCTTCATGGCAT
TGACACTTACGTGACGTGGCAAAATCACCTCCCTCCAAATCACATACTTC
CAATCGACCCAACGATCCCAACTGCCATGCCAAGCAACAAGAAAGGTGTC
CCTACTGTGGTGCACCTCCACGGCGGCATTGATGAACCTGAGAGCGATGG
ATACGCAAAATCATGGTTCACCGCTGGATTTGAAGAGAAGGGACCCACTT
GGACTAACGAAACGTACCATTATCACAACATGCAGCAGCCGGGGAATACG
TGGTATCATGATCATACCATGGGGTTGACTAGAGTCAACCTGCTGGCTGG
CTTGATTGGGGCCTATATTCTCCGCCATCCTGATGTTGAGGCTCCGCTTA
GACTCCCAGTGGTGACGTGTTCGA
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