FC931301

Overview
NameFC931301
Unique NameFC931301
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931301 vs. ExPASy Swiss-Prot
Match: DUS1_SCHPO (tRNA-dihydrouridine synthase 1 OS=Schizosaccharomyces pombe GN=dus1 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.726e-36
Identity = 70/112 (62.50%), Postives = 88/112 (78.57%), Query Frame = 2
Query:  389 WTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFAI--CKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGKYGAFL 718
            + K+GRPK I+APMVD SELP+R+L RR GA+  Y+PM HSR+F ESE YRN+ F+     E+RPL +QFC NDPEI+L AA+   PYCD VD+NLGCPQ IA++GKYG+FL
Sbjct:   12 YNKIGRPKRILAPMVDQSELPWRILARRSGADLCYSPMFHSRLFGESEDYRNKVFSTRTIPEERPLIIQFCGNDPEIMLKAAKIAAPYCDAVDVNLGCPQGIAKKGKYGSFL 123          
BLAST of FC931301 vs. ExPASy Swiss-Prot
Match: DUS1_YEAST (tRNA-dihydrouridine synthase 1 OS=Saccharomyces cerevisiae GN=DUS1 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.160e-33
Identity = 70/112 (62.50%), Postives = 85/112 (75.89%), Query Frame = 2
Query:  395 KLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFAIC---KEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGKYGAFLM 721
            K+GRP  IVAPMVD SEL +R+L RRYGA  AYTPMLH+++F  S+KYR + ++       DRPL VQFCANDPE LL AA+ VE  CD VD+NLGCPQ IA++G YG+FLM
Sbjct:   25 KIGRPTRIVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSSLDGSSVDRPLVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLM 136          
BLAST of FC931301 vs. ExPASy Swiss-Prot
Match: DUS1L_RAT (tRNA-dihydrouridine synthase 1-like OS=Rattus norvegicus GN=Dus1l PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.400e-32
Identity = 64/113 (56.64%), Postives = 83/113 (73.45%), Query Frame = 2
Query:  389 WTK-LGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFA--ICKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGKYGAFL 718
            W++ LG  + +VAPMVD SEL +R+L RR+GA+  YTPMLH+++F     YR E     +C EDRPL VQFCANDPE+ + AA   + YCD +D+NLGCPQ IA+RG+YGAFL
Sbjct:   10 WSRALGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDVCPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGRYGAFL 122          
BLAST of FC931301 vs. ExPASy Swiss-Prot
Match: DUS1L_MOUSE (tRNA-dihydrouridine synthase 1-like OS=Mus musculus GN=Dus1l PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.119e-32
Identity = 64/113 (56.64%), Postives = 82/113 (72.57%), Query Frame = 2
Query:  389 WTK-LGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFA--ICKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGKYGAFL 718
            W++ LG  + +VAPMVD SEL +R+L RR+GA+  YTPMLH+++F     YR E     +C EDRPL VQFCANDPE+ + AA   + YCD +D+NLGCPQ IA+RG YGAFL
Sbjct:   10 WSRTLGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDVCPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFL 122          
BLAST of FC931301 vs. ExPASy Swiss-Prot
Match: DUS1L_HUMAN (tRNA-dihydrouridine synthase 1-like OS=Homo sapiens GN=DUS1L PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.022e-31
Identity = 61/103 (59.22%), Postives = 76/103 (73.79%), Query Frame = 2
Query:  416 IVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEF--AICKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGKYGAFL 718
            +VAPMVD SEL +R+L RR+GA+  YTPMLH+++F     YR E     +C EDRPL VQFCANDPE+ + AA   + YCD +D+NLGCPQ IA+RG YGAFL
Sbjct:   20 VVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFL 122          
BLAST of FC931301 vs. ExPASy Swiss-Prot
Match: DUS4L_HUMAN (tRNA-dihydrouridine synthase 4-like OS=Homo sapiens GN=DUS4L PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.746e-19
Identity = 50/102 (49.02%), Postives = 64/102 (62.75%), Query Frame = 2
Query:  416 IVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFAICKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGKYGAFLM 721
            + APMV  S+L FR L R+Y  +  YTPM+ +  F +S K R+ EF   + D PL VQF AND  +L +AAR V PY + +DIN GCPQR A    YGA L+
Sbjct:   30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTTNQGDCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLI 131          
BLAST of FC931301 vs. ExPASy Swiss-Prot
Match: DUS4L_MOUSE (tRNA-dihydrouridine synthase 4-like OS=Mus musculus GN=Dus4l PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.348e-18
Identity = 49/102 (48.04%), Postives = 62/102 (60.78%), Query Frame = 2
Query:  416 IVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFAICKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGKYGAFLM 721
            + APMV  S+L FR L R+Y  +  YTPM+ +  F  S K R+ EF   + D PL VQF AND  +L +AA  V PY + +DIN GCPQR A    YGA L+
Sbjct:   30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIIAADFVRSIKARDSEFTTNQGDCPLIVQFAANDARLLSDAALLVCPYANGIDINCGCPQRWAMADGYGACLI 131          
BLAST of FC931301 vs. ExPASy Swiss-Prot
Match: DUS4_YEAST (tRNA-dihydrouridine synthase 4 OS=Saccharomyces cerevisiae GN=DUS4 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.346e-16
Identity = 44/107 (41.12%), Postives = 57/107 (53.27%), Query Frame = 2
Query:  401 GRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFAICKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGKYGAFLM 721
            GRP  I  PMV  S+LPFR LCR Y  +  Y+PM+ +R +  +E  R  + +   ED PL VQ   N+   LL     V PYCD + IN GCP +   R   G  L+
Sbjct:   37 GRPVTIAGPMVRYSKLPFRQLCREYNVDIVYSPMILAREYVRNEHARISDLSTNNEDTPLIVQVGVNNVADLLKFVEMVAPYCDGIGINCGCPIKEQIREGIGCALI 143          
BLAST of FC931301 vs. ExPASy Swiss-Prot
Match: YQI2_CAEEL (Uncharacterized tRNA-dihydrouridine synthase-like protein C45G9.2 OS=Caenorhabditis elegans GN=C45G9.2 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.191e-15
Identity = 41/98 (41.84%), Postives = 59/98 (60.20%), Query Frame = 2
Query:  428 MVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFAICKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGKYGAFLM 721
            MV  S+L FR L R Y  +  +TPM++++ F ESEK R+ E ++C+ D PL VQF  +DP +L  AA  V      VD+N GCP+   R   +G+ L+
Sbjct:    1 MVRYSKLAFRQLVRVYDVDVCFTPMIYAKNFIESEKCRSSELSVCEGDSPLIVQFATDDPFVLSEAAEMVYKCSTGVDLNCGCPKHDVRSKGFGSALL 98          
BLAST of FC931301 vs. ExPASy Swiss-Prot
Match: DUS4_SCHPO (tRNA-dihydrouridine synthase 4 OS=Schizosaccharomyces pombe GN=dus4 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.534e-14
Identity = 46/106 (43.40%), Postives = 60/106 (56.60%), Query Frame = 2
Query:  404 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFAICKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGKYGAFLM 721
            RP  I APMV  S+LPFR L R Y  +  YTPM+ ++ F    K R  +F+    D  L +QF  +DP IL  AA+ V PY D + IN GCPQ  A +   G+ L+
Sbjct:   19 RPVHIAAPMVRYSKLPFRQLVRDYNTDIVYTPMILAKEFLHP-KGRYFDFSTNDADASLILQFGVDDPVILEKAAQLVGPYVDGIGINCGCPQTWAIQEGIGSALL 123          
The following BLAST results are available for this feature:
BLAST of FC931301 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
DUS1_SCHPO2.726e-3662.50tRNA-dihydrouridine synthase 1 OS=Schizosaccharomy... [more]
DUS1_YEAST2.160e-3362.50tRNA-dihydrouridine synthase 1 OS=Saccharomyces ce... [more]
DUS1L_RAT1.400e-3256.64tRNA-dihydrouridine synthase 1-like OS=Rattus norv... [more]
DUS1L_MOUSE3.119e-3256.64tRNA-dihydrouridine synthase 1-like OS=Mus musculu... [more]
DUS1L_HUMAN2.022e-3159.22tRNA-dihydrouridine synthase 1-like OS=Homo sapien... [more]
DUS4L_HUMAN6.746e-1949.02tRNA-dihydrouridine synthase 4-like OS=Homo sapien... [more]
DUS4L_MOUSE3.348e-1848.04tRNA-dihydrouridine synthase 4-like OS=Mus musculu... [more]
DUS4_YEAST5.346e-1641.12tRNA-dihydrouridine synthase 4 OS=Saccharomyces ce... [more]
YQI2_CAEEL1.191e-1541.84Uncharacterized tRNA-dihydrouridine synthase-like ... [more]
DUS4_SCHPO8.534e-1443.40tRNA-dihydrouridine synthase 4 OS=Schizosaccharomy... [more]
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Properties
Property NameValue
Genbank descriptionC34103F08EF PostHarvP1 Citrus clementina cDNA clone C34103F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931301 ID=FC931301; Name=FC931301; organism=Citrus clementina; type=EST; length=721bp
GAGTGAAACAAACGCATAACATCCGATCTCGTGGCCTCCTCTAAACCCTA
CAACCAACGGCGGCGATGGGTTGCTTCTCAGCAATCCCCATCGTCCGCTC
ATGAACTTCAAACCGATAACCATGATTCCTTTACGCGTCACCTCTCTCTA
CCCTCCTCTTCCAACAGTAAAACCCACGATGGCCCAAACTCGGACCCGAA
CTCTCCATTCGGATCCTTCACAAGACAGCGACGACCTCCTCTGCTCCGAT
AGCAACAATCACGACAACCAACAGGAACAACCAGAGCATGAAGAACCTTC
TTCTTTGCCCGAAACGGCGTCGTCTTCATTGCCATCTCCGAGGGGTTACT
TGTCTGGAGAGGCGCGTGCTGAGAGAGCATGGGCTCATTGGACTAAATTG
GGCCGACCGAAGTTGATTGTCGCCCCGATGGTTGATAATTCGGAGCTTCC
ATTTCGGATGCTTTGCAGAAGGTACGGTGCTGAGGCTGCTTATACGCCGA
TGCTGCACTCTAGGATTTTTACCGAGTCTGAGAAGTATAGGAATGAAGAA
TTTGCCATCTGTAAGGAGGACCGACCATTATTTGTTCAATTTTGTGCCAA
TGATCCTGAAATTTTATTGAATGCTGCAAGAAGAGTGGAACCTTACTGCG
ATTATGTGGACATTAATTTAGGGTGTCCCCAGCGTATTGCTAGGCGGGGA
AAATATGGTGCATTCTTGATG
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