FC931305

Overview
NameFC931305
Unique NameFC931305
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931305_ssr115 microsatellite FC931305_ssr115:115..126. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15306 contig Ccv1_Contig15306:1..744. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931305 vs. ExPASy Swiss-Prot
Match: AL3H1_ARATH (Aldehyde dehydrogenase family 3 member H1 OS=Arabidopsis thaliana GN=ALDH3H1 PE=2 SV=2)

HSP 1 Score: 258.84 bits (660), Expect = 2.167e-68
Identity = 132/205 (64.39%), Postives = 165/205 (80.49%), Query Frame = 2
Query:  128 EVFDAEAASLFVKELRGTFASGKTKSYGWRVSQLKSLMKMLNEREPDIVDALRQDLDKPELESSIYEVALLKTSIKSALKELKHWMTPEKAKTSITTFPSSAEIVPEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEYMDLSSIRVVEGAVAETSALLDQSGINMLYR-QFRVARIVMAAAA 739
            +VF +  AS  V ELR +F  G T+ Y WRV+QLK LM + +  EP+IV ALR DL KPELESS+YEV+LL+ SIK ALK+LK+WM PEKAKTS+TTFP+SAEIV EP GVVL+IS WNYPFLLS+DPV+GAI+AGNA+VLKPSE+APASS+LL KL+ +Y+D S++RVVEGAV ETSALL+Q    + Y    ++ R++MAAAA
Sbjct:    5 KVFGSAEASNLVTELRRSFDDGVTRGYEWRVTQLKKLMIICDNHEPEIVAALRDDLGKPELESSVYEVSLLRNSIKLALKQLKNWMAPEKAKTSLTTFPASAEIVSEPLGVVLVISAWNYPFLLSIDPVIGAISAGNAVVLKPSELAPASSALLTKLLEQYLDPSAVRVVEGAVTETSALLEQKWDKIFYTGSSKIGRVIMAAAA 209          
BLAST of FC931305 vs. ExPASy Swiss-Prot
Match: AL3I1_ARATH (Aldehyde dehydrogenase family 3 member I1, chloroplastic OS=Arabidopsis thaliana GN=ALDH3I1 PE=2 SV=2)

HSP 1 Score: 246.128 bits (627), Expect = 1.453e-64
Identity = 125/209 (59.81%), Postives = 164/209 (78.47%), Query Frame = 2
Query:  116 KKKNEVFDAEAASLFVKELRGTFASGKTKSYGWRVSQLKSLMKMLNEREPDIVDALRQDLDKPELESSIYEVALLKTSIKSALKELKHWMTPEKAKTSITTFPSSAEIVPEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEYMDLSSIRVVEGAVAETSALLDQSGINMLYR-QFRVARIVMAAAA 739
            K++   F  + A+L V ELR  F SG+TKSY WR+SQL+++ +M++E+E  I +AL QDL KPELE+ + E++  K+S   A+KELK+WM PE  KTS+TTFPSSA+IV EP GVVL+IS WN+PFLLS++PV+GAIAAGNA+VLKPSE+APA+SSLLAKL  EY+D ++IRV+EG V ET+ALLDQ    + +    RVARI+MAAAA
Sbjct:   64 KEQASDFSGKEAALLVDELRSNFNSGRTKSYEWRISQLQNIARMIDEKEKCITEALYQDLSKPELEAFLAEISNTKSSCMLAIKELKNWMAPETVKTSVTTFPSSAQIVSEPLGVVLVISAWNFPFLLSVEPVIGAIAAGNAVVLKPSEIAPAASSLLAKLFSEYLDNTTIRVIEGGVPETTALLDQKWDKIFFTGGARVARIIMAAAA 272          
BLAST of FC931305 vs. ExPASy Swiss-Prot
Match: ALDH_CRAPL (Aldehyde dehydrogenase OS=Craterostigma plantagineum GN=ALDH PE=1 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.704e-60
Identity = 118/202 (58.42%), Postives = 155/202 (76.73%), Query Frame = 2
Query:  137 DAEAASLFVKELRGTFASGKTKSYGWRVSQLKSLMKMLNEREPDIVDALRQDLDKPELESSIYEVALLKTSIKSALKELKHWMTPEKAKTSITTFPSSAEIVPEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEYMDLSSIRVVEGAVAETSALLDQSGINMLYR-QFRVARIVMAAAA 739
            DAE     V  LR T+ SGKTKSY WRVSQLK+L+K+    + ++V+ALR DL KPE E+ ++E+ ++  + KSALKEL  WM P+K KTS+ T+PSSAEIV EP GVVL+I+ WNYPFLL+LDP++GAIAAGN +VLKPSE+APA+S+LLAKL+ +Y+D S+IRVVEGAV E  ALLDQ    + Y    +V +IV+++AA
Sbjct:    5 DAEGV---VDGLRRTYISGKTKSYEWRVSQLKALLKITTHHDKEVVEALRADLKKPEHEAYVHEIFMVSNACKSALKELHQWMKPQKVKTSLATYPSSAEIVSEPLGVVLVITAWNYPFLLALDPMIGAIAAGNCVVLKPSEIAPATSALLAKLLNQYVDTSAIRVVEGAVPEMQALLDQRWDKIFYTGSSKVGQIVLSSAA 203          
BLAST of FC931305 vs. ExPASy Swiss-Prot
Match: AL3A2_RAT (Fatty aldehyde dehydrogenase OS=Rattus norvegicus GN=Aldh3a2 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.872e-36
Identity = 84/194 (43.30%), Postives = 122/194 (62.89%), Query Frame = 2
Query:  161 VKELRGTFASGKTKSYGWRVSQLKSLMKMLNEREPDIVDALRQDLDKPELESSIYEVALLKTSIKSALKELKHWMTPEKAKTSITTFPSSAEIVPEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEYMDLSSIRVVEGAVAETSALLDQSGINMLYR-QFRVARIVMAAAA 739
            V+ LR TF SG+++   +R+ QL++L +M+ ERE DI+ A+  DL K EL +  +EV  +   I   L  L    +   AK ++ T    A + PEP GVVLII  WNYPF+L+L P+VGAIAAGNA ++KPSE++  ++ +LA+L+ +Y+D     +V G V ET+ LL Q   ++LY     V +IVM AAA
Sbjct:    5 VQRLRQTFRSGRSRPLRFRLQQLEALRRMVQEREKDILAAIAADLSKSELNAYSHEVITILGEIDFMLGNLPELASARPAKKNLLTMMDEAYVQPEPLGVVLIIGAWNYPFVLTLQPLVGAIAAGNAAIVKPSELSENTAKILAELLPQYLDQDLYMIVNGGVEETTELLRQRFDHILYTGNTAVGKIVMEAAA 198          
BLAST of FC931305 vs. ExPASy Swiss-Prot
Match: AL3B1_RAT (Aldehyde dehydrogenase family 3 member B1 OS=Rattus norvegicus GN=Aldh3b1 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.363e-36
Identity = 83/194 (42.78%), Postives = 121/194 (62.37%), Query Frame = 2
Query:  161 VKELRGTFASGKTKSYGWRVSQLKSLMKMLNEREPDIVDALRQDLDKPELESSIYEVALLKTSIKSALKELKHWMTPEKAKTSITTFPSSAEIVPEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEYMDLSSIRVVEGAVAETSALLDQSGINMLYR-QFRVARIVMAAAA 739
            +++LR  F +G+T+S  +R +QL+ L   L + +  + +AL QDL K   ES + E+A+ +  +  AL+ L+ WM  EK   ++ T   SA I  EPFG+VLII PWNYP  L+L P+VGAIAAGN +VLKPSE++ A+  +LA+++  Y+D S   VV G   ET  LL+     + +     V +IVMAAAA
Sbjct:    8 LQQLREAFNAGRTRSAEFRAAQLQGLSHFLRDNKQQLQEALAQDLHKSAFESEVSEIAISQAEVDLALRNLRSWMKDEKVSKNLATQLDSAFIRKEPFGLVLIIVPWNYPLNLTLVPLVGAIAAGNCVVLKPSEISKATEKILAEVLPRYLDQSCFAVVLGGPQETGQLLEHRFDYIFFTGNTYVGKIVMAAAA 201          
BLAST of FC931305 vs. ExPASy Swiss-Prot
Match: AL3F1_ARATH (Aldehyde dehydrogenase family 3 member F1 OS=Arabidopsis thaliana GN=ALDH3F1 PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 1.085e-35
Identity = 74/194 (38.14%), Postives = 124/194 (63.92%), Query Frame = 2
Query:  161 VKELRGTFASGKTKSYGWRVSQLKSLMKMLNEREPDIVDALRQDLDKPELESSIYEVALLKTSIKSALKELKHWMTPEKAKTSITTFPSSAEIVPEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEYMDLSSIRVVEGAVAETSALLDQSGINMLYR-QFRVARIVMAAAA 739
            ++E+R TFASG+T+S  WR +Q+ ++ +M+ + E  I +AL QDL K   E+   E+ ++  +   A+  L  W  P+ +K  +  +P+  +++ EP+G VL++S WN+P  LSLDP++GAIAAGN ++LK SE++P +S+ LAK +  Y+D  +I+V+EG     + LL      + +    ++ RI+MAAAA
Sbjct:   12 LREMRETFASGRTRSLKWRKAQIGAIYEMVKDNEDKICNALFQDLGKHSTEAFRDELGVVLRTATVAINCLDKWAVPKHSKLPLLFYPAKGKVISEPYGTVLVLSSWNFPISLSLDPLIGAIAAGNTVLLKSSELSPNASAFLAKTIPAYLDTKAIKVIEGGPDVATILLQHQWDKIFFTGSPKIGRIIMAAAA 205          
BLAST of FC931305 vs. ExPASy Swiss-Prot
Match: AL3A2_HUMAN (Fatty aldehyde dehydrogenase OS=Homo sapiens GN=ALDH3A2 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.085e-35
Identity = 81/196 (41.33%), Postives = 122/196 (62.24%), Query Frame = 2
Query:  155 LFVKELRGTFASGKTKSYGWRVSQLKSLMKMLNEREPDIVDALRQDLDKPELESSIYEVALLKTSIKSALKELKHWMTPEKAKTSITTFPSSAEIVPEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEYMDLSSIRVVEGAVAETSALLDQSGINMLYR-QFRVARIVMAAAA 739
            L V+ +R  F SG+++   +R+ QL++L +M+ ERE DI+ A+  DL K E      EV  +   I   L+ L  W+T +  K ++ T    A I P+P GVVLII  WNYPF+L++ P++GAIAAGNA+++KPSE++  ++ +LAKL+ +Y+D     V+ G V ET+ LL Q   ++ Y     V +IVM AAA
Sbjct:    3 LEVRRVRQAFLSGRSRPLRFRLQQLEALRRMVQEREKDILTAIAADLCKSEFNVYSQEVITVLGEIDFMLENLPEWVTAKPVKKNVLTMLDEAYIQPQPLGVVLIIGAWNYPFVLTIQPLIGAIAAGNAVIIKPSELSENTAKILAKLLPQYLDQDLYIVINGGVEETTELLKQRFDHIFYTGNTAVGKIVMEAAA 198          
BLAST of FC931305 vs. ExPASy Swiss-Prot
Match: AL3B1_MOUSE (Aldehyde dehydrogenase family 3 member B1 OS=Mus musculus GN=Aldh3b1 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.418e-35
Identity = 82/194 (42.27%), Postives = 120/194 (61.86%), Query Frame = 2
Query:  161 VKELRGTFASGKTKSYGWRVSQLKSLMKMLNEREPDIVDALRQDLDKPELESSIYEVALLKTSIKSALKELKHWMTPEKAKTSITTFPSSAEIVPEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEYMDLSSIRVVEGAVAETSALLDQSGINMLYR-QFRVARIVMAAAA 739
            +++LR  F  G+T+S  +R +QL+ L   L + +  + +AL QDL K   E+ + E+A+ +  +  AL+ L+ WM  EK   ++ T   SA I  EPFG+VLII PWNYP  L+L P+VGAIAAGN +VLKPSE++ A+  +LA+++  Y+D S   VV G   ET  LL+     + +     V +IVMAAAA
Sbjct:    8 LQQLREAFKEGRTRSAEFRAAQLQGLSHFLRDNKQQLQEALAQDLHKSAFEAEVSEIAISQAEVDLALRNLRSWMKDEKVSKNLATQLDSAFIRKEPFGLVLIIVPWNYPINLTLVPLVGAIAAGNCVVLKPSEISKATEKILAEVLPRYLDQSCFTVVLGGRQETGQLLEHKFDYIFFTGNAYVGKIVMAAAA 201          
BLAST of FC931305 vs. ExPASy Swiss-Prot
Match: AL3A2_PONAB (Fatty aldehyde dehydrogenase OS=Pongo abelii GN=ALDH3A2 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.418e-35
Identity = 81/196 (41.33%), Postives = 122/196 (62.24%), Query Frame = 2
Query:  155 LFVKELRGTFASGKTKSYGWRVSQLKSLMKMLNEREPDIVDALRQDLDKPELESSIYEVALLKTSIKSALKELKHWMTPEKAKTSITTFPSSAEIVPEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEYMDLSSIRVVEGAVAETSALLDQSGINMLYR-QFRVARIVMAAAA 739
            L V+ +R  F SG+++   +R+ QL++L +M+ ERE DI+ A+  DL K E      EV  +   I   L+ L  W+T +  K ++ T    A I P+P GVVLII  WNYPF+L++ P++GAIAAGNA+++KPSE++  ++ +LAKL+ +Y+D     V+ G V ET+ LL Q   ++ Y     V +IVM AAA
Sbjct:    3 LEVRRVRQAFLSGRSRPLRFRLQQLEALRRMVQEREKDILAAIAADLCKSEFNVYSQEVITVLGEIDFMLENLPEWVTAKPVKKNVLTMLDEAYIQPQPLGVVLIIGAWNYPFVLTIQPLIGAIAAGNAVIIKPSELSENTAKMLAKLLPQYLDQDLYIVINGGVEETTELLKQRFDHIFYTGNTAVGKIVMEAAA 198          
BLAST of FC931305 vs. ExPASy Swiss-Prot
Match: AL3A2_MACFA (Fatty aldehyde dehydrogenase OS=Macaca fascicularis GN=ALDH3A2 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.851e-35
Identity = 80/194 (41.24%), Postives = 122/194 (62.89%), Query Frame = 2
Query:  161 VKELRGTFASGKTKSYGWRVSQLKSLMKMLNEREPDIVDALRQDLDKPELESSIYEVALLKTSIKSALKELKHWMTPEKAKTSITTFPSSAEIVPEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEYMDLSSIRVVEGAVAETSALLDQSGINMLYR-QFRVARIVMAAAA 739
            V+ +R  F SG+++   +R+ QL++L +M+ ERE DI+ A+  DL K EL +   EV  +   I   L+ L  W+T +  K ++ T    A I P+P GVVLII  WNYPF+L + P++GAIAAGNA+++KPSE++  ++ ++AKL+ +Y+D     V+ G V ET+ LL Q   ++ Y     V +IVM AAA
Sbjct:    5 VQRVRQAFLSGRSRPLRFRLQQLEALRRMVQEREKDILAAIAADLCKSELNAYSQEVITVLGEIDFMLENLPEWVTAKPVKKNLLTMMDEAYIQPQPLGVVLIIGAWNYPFVLIIQPLIGAIAAGNAVIIKPSELSENTAKIVAKLLPQYLDQDLYVVINGGVEETTELLKQRFDHIFYTGNTAVGKIVMEAAA 198          
The following BLAST results are available for this feature:
BLAST of FC931305 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
AL3H1_ARATH2.167e-6864.39Aldehyde dehydrogenase family 3 member H1 OS=Arabi... [more]
AL3I1_ARATH1.453e-6459.81Aldehyde dehydrogenase family 3 member I1, chlorop... [more]
ALDH_CRAPL3.704e-6058.42Aldehyde dehydrogenase OS=Craterostigma plantagine... [more]
AL3A2_RAT4.872e-3643.30Fatty aldehyde dehydrogenase OS=Rattus norvegicus ... [more]
AL3B1_RAT6.363e-3642.78Aldehyde dehydrogenase family 3 member B1 OS=Rattu... [more]
AL3F1_ARATH1.085e-3538.14Aldehyde dehydrogenase family 3 member F1 OS=Arabi... [more]
AL3A2_HUMAN1.085e-3541.33Fatty aldehyde dehydrogenase OS=Homo sapiens GN=AL... [more]
AL3B1_MOUSE1.418e-3542.27Aldehyde dehydrogenase family 3 member B1 OS=Mus m... [more]
AL3A2_PONAB1.418e-3541.33Fatty aldehyde dehydrogenase OS=Pongo abelii GN=AL... [more]
AL3A2_MACFA1.851e-3541.24Fatty aldehyde dehydrogenase OS=Macaca fasciculari... [more]

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Properties
Property NameValue
Genbank descriptionC34103F12EF PostHarvP1 Citrus clementina cDNA clone C34103F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931305 ID=FC931305; Name=FC931305; organism=Citrus clementina; type=EST; length=741bp
GGACATCATTTTATTCGTCAGCATTGTTTGTAGCCGAAGCAAAAAAAACA
GAATTCCAAAATCCATCCGTCCTTCTCTCGCTTTTTGAATTGCAATGGGG
AGTGAGGAGGAGACGAAGAAGAAGAATGAGGTGTTCGATGCGGAGGCGGC
GAGCTTGTTCGTGAAGGAGCTGAGAGGAACTTTTGCGTCTGGAAAAACGA
AGAGCTACGGATGGAGAGTGTCTCAGTTGAAGAGTTTGATGAAGATGCTC
AACGAGCGCGAGCCGGACATCGTCGACGCTCTTCGTCAAGATCTCGATAA
GCCGGAACTTGAATCCTCCATTTACGAGGTAGCATTGTTGAAGACTTCTA
TCAAGTCAGCACTCAAGGAACTAAAACACTGGATGACACCAGAGAAGGCT
AAAACTTCAATTACAACTTTTCCTTCATCAGCTGAAATAGTGCCAGAACC
ATTTGGTGTTGTATTAATCATCTCACCATGGAATTATCCTTTCTTGTTGT
CTCTCGATCCAGTTGTTGGGGCTATTGCAGCTGGTAATGCTCTGGTTCTA
AAGCCATCTGAAGTTGCTCCAGCATCGTCTTCATTGCTTGCAAAACTAGT
TGGTGAATATATGGATTTGTCTTCCATAAGGGTTGTTGAAGGGGCAGTTG
CTGAAACGTCTGCACTGCTTGATCAAAGTGGGATAAATATGTTATACAGG
CAATTCAGAGTTGCACGCATTGTGATGGCTGCAGCTGCAAG
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