FC931332 | Citrus Genome Database

Overview


Name	FC931332
Unique Name	FC931332
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	743

Libraries


Library Name	Type
PostHarvP1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
FC931332_ssr120	microsatellite	FC931332_ssr120:120..131.	BLAST: Citrus ESTs to Prunus persica proteins V1
FC931332_ssr136	microsatellite	FC931332_ssr136:136..159.	BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig8311	contig	Ccv1_Contig8311:55..809.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RBH1B_ARATH (Ras-related protein RABH1B OS=Arabidopsis thaliana GN=RABH1B PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.373e-58
Identity = 65/69 (94.20%), Postives = 65/69 (94.20%), Query Frame = 1

Query:  292 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLW    QE
Sbjct:    1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69

HSP 2 Score: 117.857 bits (294), Expect = 2.373e-58
Identity = 66/90 (73.33%), Postives = 74/90 (82.22%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSF-IEEGEAKLVSSCYVY-ETSAR 736
            ++GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKW++EVRTERGSDVI+VLVGNK  L  K    IEE EAK      ++ ETSA+
Sbjct:   65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWIDEVRTERGSDVIVVLVGNKTDLVDKRQVSIEEAEAKARELNVMFIETSAK 154

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RBH1C_ARATH (Ras-related protein RABH1C OS=Arabidopsis thaliana GN=RABH1C PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.745e-49
Identity = 60/69 (86.96%), Postives = 61/69 (88.41%), Query Frame = 1

Query:  292 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            MA VS LAK+KLVFLGDQSVGKTSIITRFMYDKFD TYQ TIGIDFLSKTMYLEDRTVRLQLW    QE
Sbjct:    1 MASVSPLAKFKLVFLGDQSVGKTSIITRFMYDKFDTTYQPTIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69

HSP 2 Score: 98.9821 bits (245), Expect = 1.745e-49
Identity = 53/77 (68.83%), Postives = 64/77 (83.12%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKLILWTKGSF-IEEGEAK 697
            ++GQERFRSLIPSYIRDSSVA++VYDV++RQ+FLNT+KW+E+V  ERG S+VIIVLVGNK  L  K    I EGE K
Sbjct:   65 TAGQERFRSLIPSYIRDSSVAIVVYDVSNRQTFLNTSKWIEDVHRERGQSNVIIVLVGNKTDLVEKRQVSISEGEDK 141

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB6_DICDI (Ras-related protein Rab-6 OS=Dictyostelium discoideum GN=rab6 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.116e-48
Identity = 56/66 (84.85%), Postives = 59/66 (89.39%), Query Frame = 1

Query:  301 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            + +L+KYKLVFLGDQSVGKTSIITRFMYD FD TYQATIGIDFLSKTMYLEDRTVRLQLW    QE
Sbjct:    1 MESLSKYKLVFLGDQSVGKTSIITRFMYDTFDITYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 66

HSP 2 Score: 102.449 bits (254), Expect = 1.116e-48
Identity = 54/90 (60.00%), Postives = 70/90 (77.78%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSF-IEEGEAKLVSSCYVY-ETSAR 736
            ++GQERFRSLIPSYIRDSSVA++VYD+ ++ SF NT KW+E+VR ERG++V+I+LVGNK  L  K    IEEGEAK      ++ ETSA+
Sbjct:   62 TAGQERFRSLIPSYIRDSSVAIVVYDITNKVSFTNTIKWIEDVRNERGNNVVIMLVGNKTDLADKRQVSIEEGEAKAKEYDIMFTETSAK 151

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RYH1_SCHPO (GTP-binding protein ryh1 OS=Schizosaccharomyces pombe GN=ryh1 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.897e-48
Identity = 54/64 (84.38%), Postives = 59/64 (92.19%), Query Frame = 1

Query:  307 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +L K+KLVFLG+QSVGKTS+ITRFMYD+FDNTYQATIGIDFLSKTMYLEDRTVRLQLW    QE
Sbjct:    8 SLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 71

HSP 2 Score: 102.449 bits (254), Expect = 1.897e-48
Identity = 56/90 (62.22%), Postives = 67/90 (74.44%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSFI-EEGEAKLVSSCYVY-ETSAR 736
            ++GQERFRSLIPSYIRDSSVA+IVYD+ +  SF+NT KW+E+VR ERG DVIIVLVGNK  L  K     EEGE K      ++ ETSA+
Sbjct:   67 TAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGNKTDLADKRQVTQEEGEKKAKELKIMHMETSAK 156

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB6B_MOUSE (Ras-related protein Rab-6B OS=Mus musculus GN=Rab6b PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.221e-48
Identity = 54/63 (85.71%), Postives = 57/63 (90.48%), Query Frame = 1

Query:  310 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLW    QE
Sbjct:   11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 73

HSP 2 Score: 102.449 bits (254), Expect = 3.221e-48
Identity = 57/91 (62.64%), Postives = 72/91 (79.12%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSF-IEEGE--AKLVSSCYVYETSAR 736
            ++GQERFRSLIPSYIRDS+VAV+VYD+ +  SF  T+KW+++VRTERGSDVII+LVGNK  L  K    IEEGE  AK +S  ++ ETSA+
Sbjct:   69 TAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFI-ETSAK 158

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB6B_HUMAN (Ras-related protein Rab-6B OS=Homo sapiens GN=RAB6B PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.221e-48
Identity = 54/63 (85.71%), Postives = 57/63 (90.48%), Query Frame = 1

Query:  310 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLW    QE
Sbjct:   11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 73

HSP 2 Score: 102.449 bits (254), Expect = 3.221e-48
Identity = 57/91 (62.64%), Postives = 72/91 (79.12%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSF-IEEGE--AKLVSSCYVYETSAR 736
            ++GQERFRSLIPSYIRDS+VAV+VYD+ +  SF  T+KW+++VRTERGSDVII+LVGNK  L  K    IEEGE  AK +S  ++ ETSA+
Sbjct:   69 TAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFI-ETSAK 158

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB6B_BOVIN (Ras-related protein Rab-6B OS=Bos taurus GN=RAB6B PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.221e-48
Identity = 54/63 (85.71%), Postives = 57/63 (90.48%), Query Frame = 1

Query:  310 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLW    QE
Sbjct:   11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 73

HSP 2 Score: 102.449 bits (254), Expect = 3.221e-48
Identity = 57/91 (62.64%), Postives = 72/91 (79.12%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSF-IEEGE--AKLVSSCYVYETSAR 736
            ++GQERFRSLIPSYIRDS+VAV+VYD+ +  SF  T+KW+++VRTERGSDVII+LVGNK  L  K    IEEGE  AK +S  ++ ETSA+
Sbjct:   69 TAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFI-ETSAK 158

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB6A_PONAB (Ras-related protein Rab-6A OS=Pongo abelii GN=RAB6A PE=2 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 3.221e-48
Identity = 54/63 (85.71%), Postives = 57/63 (90.48%), Query Frame = 1

Query:  310 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLW    QE
Sbjct:   11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 73

HSP 2 Score: 102.449 bits (254), Expect = 3.221e-48
Identity = 56/90 (62.22%), Postives = 69/90 (76.67%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSF-IEEGEAKLVSSCYVY-ETSAR 736
            ++GQERFRSLIPSYIRDS+VAV+VYD+ +  SF  TTKW+++VRTERGSDVII+LVGNK  L  K    IEEGE K      ++ ETSA+
Sbjct:   69 TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAK 158

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB6A_MOUSE (Ras-related protein Rab-6A OS=Mus musculus GN=Rab6a PE=1 SV=4)

HSP 1 Score: 110.923 bits (276), Expect = 3.221e-48
Identity = 54/63 (85.71%), Postives = 57/63 (90.48%), Query Frame = 1

Query:  310 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLW    QE
Sbjct:   11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 73

HSP 2 Score: 102.449 bits (254), Expect = 3.221e-48
Identity = 56/90 (62.22%), Postives = 69/90 (76.67%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSF-IEEGEAKLVSSCYVY-ETSAR 736
            ++GQERFRSLIPSYIRDS+VAV+VYD+ +  SF  TTKW+++VRTERGSDVII+LVGNK  L  K    IEEGE K      ++ ETSA+
Sbjct:   69 TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAK 158

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB6A_HUMAN (Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6A PE=1 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 3.221e-48
Identity = 54/63 (85.71%), Postives = 57/63 (90.48%), Query Frame = 1

Query:  310 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLW    QE
Sbjct:   11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 73

HSP 2 Score: 102.449 bits (254), Expect = 3.221e-48
Identity = 56/90 (62.22%), Postives = 69/90 (76.67%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSF-IEEGEAKLVSSCYVY-ETSAR 736
            ++GQERFRSLIPSYIRDS+VAV+VYD+ +  SF  TTKW+++VRTERGSDVII+LVGNK  L  K    IEEGE K      ++ ETSA+
Sbjct:   69 TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAK 158

The following BLAST results are available for this feature:

BLAST of FC931332 vs. ExPASy Swiss-Prot

BLAST of FC931332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208


Match Name	E-value	Identity	Description
RBH1B_ARATH	2.373e-58	94.20	Ras-related protein RABH1B OS=Arabidopsis thaliana...	[more]
RBH1C_ARATH	1.745e-49	86.96	Ras-related protein RABH1C OS=Arabidopsis thaliana...	[more]
RAB6_DICDI	1.116e-48	84.85	Ras-related protein Rab-6 OS=Dictyostelium discoid...	[more]
RYH1_SCHPO	1.897e-48	84.38	GTP-binding protein ryh1 OS=Schizosaccharomyces po...	[more]
RAB6B_MOUSE	3.221e-48	85.71	Ras-related protein Rab-6B OS=Mus musculus GN=Rab6...	[more]
RAB6B_HUMAN	3.221e-48	85.71	Ras-related protein Rab-6B OS=Homo sapiens GN=RAB6...	[more]
RAB6B_BOVIN	3.221e-48	85.71	Ras-related protein Rab-6B OS=Bos taurus GN=RAB6B ...	[more]
RAB6A_PONAB	3.221e-48	85.71	Ras-related protein Rab-6A OS=Pongo abelii GN=RAB6...	[more]
RAB6A_MOUSE	3.221e-48	85.71	Ras-related protein Rab-6A OS=Mus musculus GN=Rab6...	[more]
RAB6A_HUMAN	3.221e-48	85.71	Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6...	[more]

Pages

Properties


Property Name	Value
Genbank description	C34104A03EF PostHarvP1 Citrus clementina cDNA clone C34104A03, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC931332 ID=FC931332; Name=FC931332; organism=Citrus clementina; type=EST; length=743bp
ACATGGTGAGAGGCTCGCTCTGCCAGAGCCACTGAGCCAGAGCCAGCGCC
AGCGCCCGCGCACGCGTGCAGAAAATTCGTACATACACACACCTGCAGAG
AATTACTTCTATTCTATGCATAAATAAATAAAGGGGGCAGGCAGGCAGGC
AGGCAGGCATCAAAGGCAAATCCCGAAAATCCGAGGCCCCCGAGATCTCG
TCCTCCATCTCCTTCTCTCCGTTGAATACACCCGGCCGAGATCTCGTGTA
ATTGCACCAAAACTGTTGATTTTTGTTGTAGATCCGAAAAAATGGCTCCG
GTTTCAGCTCTAGCCAAGTACAAGTTGGTGTTTTTAGGGGATCAGTCCGT
GGGCAAAACTAGTATCATCACTCGCTTCATGTACGATAAATTCGACAACA
CTTATCAGGCTACCATTGGTATCGATTTCCTGTCGAAGACAATGTATCTT
GAAGACCGAACGGTTCGTTTGCAGCTCTGGACAAGAGAGATTCAGGAGTC
TCATTCCTAGCTACATCAGAGATTCCTCTGTCGCAGTCATTGTATATGAT
GTTGCAAGTAGGCAGTCTTTCCTAAACACCACCAAGTGGGTTGAAGAGGT
TCGAACTGAGCGGGGCAGTGATGTAATCATTGTCCTTGTTGGGAACAAAC
TGATCTTGTGGACAAAAGGCAGTTTCATAGAGGAGGGAGAGGCTAAGCTC
GTGAGCTCATGTTATGTTTATGAGACTAGTGCCAGGCTGGCTT